Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2545_(-)_2867793_2868071
DateWed Aug 7 12:50:18 BST 2019
Unique Job ID1e55d525ec7a0cf8
SequenceVSTTIVAGVI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.586 Y:19.951 Z:23.712
Model (left) based on template c6a7vU_
Top template information
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
Confidence and coverage
Confidence: 95.0% Coverage: 39%
36 residues ( 39% of your sequence) have been modelled with 95.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6a7vU_



95.0 47
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
2d1ea0a3



28.2 47
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
3d1ygpa_



23.7 33
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
4d2gj4a1



21.4 25
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
5d1ofda3



21.2 58
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Class II glutamine amidotransferases
6c2vdcF_



21.0 47
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
7c4l22A_



18.2 25
PDB header:transferase
Chain: A: PDB Molecule:phosphorylase;
PDBTitle: crystal structure of putative glycogen phosphorylase from2 streptococcus mutans
8d1l5wa_



18.0 43
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
9c1lm1A_



17.5 58
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme
10d2atia1



17.4 33
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
11c2c4mA_



17.3 38
PDB header:transferase
Chain: A: PDB Molecule:glycogen phosphorylase;
PDBTitle: starch phosphorylase: structural studies explain oxyanion-dependent2 kinetic stability and regulatory control.
12c3ddsB_



17.0 30
PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
13d1hiod_



16.1 24
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
14c4bqeA_



15.6 38
PDB header:transferase
Chain: A: PDB Molecule:alpha-glucan phosphorylase 2,4-glucan phosphorylase;
PDBTitle: arabidopsis thaliana cytosolic alpha-1,4-glucan phosphorylase (phs2)
15c3b0dB_



14.0 24
PDB header:dna binding protein
Chain: B: PDB Molecule:centromere protein t;
PDBTitle: crystal structure of the chicken cenp-t histone fold/cenp-w complex,2 crystal form ii
16d1id3b_



12.4 24
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
17c5lnkn_



12.2 33
PDB header:oxidoreductase
Chain: N: PDB Molecule:mitochondrial complex i, nd2 subunit;
PDBTitle: entire ovine respiratory complex i
18d2huec1



12.1 24
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
19d1htaa_



10.4 41
Fold:Histone-fold
Superfamily:Histone-fold
Family:Archaeal histone
20d1kx5b_



10.2 24
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
21c6mzlK_



not modelled 10.1 19
PDB header:transcription
Chain: K: PDB Molecule:transcription initiation factor tfiid subunit 8,taf8;
PDBTitle: human tfiid canonical state
22c3nquA_



not modelled 9.7 40
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of partially trypsinized (cenp-a/h4)2 heterotetramer
23c3r2cJ_



not modelled 8.7 56
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
24c3nqjA_



not modelled 8.2 40
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of (cenp-a/h4)2 heterotetramer
25c4e6fB_



not modelled 8.1 35
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4468 family protein (bacova_04320) from2 bacteroides ovatus atcc 8483 at 1.49 a resolution
26d1ku5a_



not modelled 8.0 35
Fold:Histone-fold
Superfamily:Histone-fold
Family:Archaeal histone
27d2f06a1



not modelled 7.8 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:BT0572-like
28c5lrbB_



not modelled 7.7 30
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4 glucan phosphorylase;
PDBTitle: plastidial phosphorylase from barley in complex with acarbose
29c3v9rC_



not modelled 7.5 21
PDB header:dna binding protein
Chain: C: PDB Molecule:uncharacterized protein yol086w-a;
PDBTitle: crystal structure of saccharomyces cerevisiae mhf complex
30c6e0cA_



not modelled 6.8 40
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: cryo-em structure of the cenp-a nucleosome (w601) in complex with a2 single chain antibody fragment
31d1a7wa_



not modelled 6.7 41
Fold:Histone-fold
Superfamily:Histone-fold
Family:Archaeal histone
32c6mzdC_



not modelled 6.1 20
PDB header:transcription
Chain: C: PDB Molecule:transcription initiation factor tfiid subunit 3;
PDBTitle: human tfiid lobe a canonical
33c1cr5B_



not modelled 6.0 24
PDB header:endocytosis/exocytosis
Chain: B: PDB Molecule:sec18p (residues 22 - 210);
PDBTitle: n-terminal domain of sec18p
34d1tafa_



not modelled 5.4 57
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
35c6b12B_



not modelled 5.2 44
PDB header:antimicrobial protein
Chain: B: PDB Molecule:tni2;
PDBTitle: structure of tne2 in complex with tni2
36c3vh5A_



not modelled 5.1 38
PDB header:dna binding protein
Chain: A: PDB Molecule:cenp-s;
PDBTitle: crystal structure of the chicken cenp-t histone fold/cenp-w/cenp-2 s/cenp-x heterotetrameric complex, crystal form i

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite