Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2546_(-)_2868164_2868577
DateWed Aug 7 12:50:18 BST 2019
Unique Job IDaff827aedbc77d2a
SequenceMVFCVDTSAW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.024 Y:31.837 Z:36.642
Model (left) based on template c5sv2A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 96%
132 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5sv2A_



100.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
2c3h87B_



100.0 32
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
3c4chgC_



99.9 20
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
4d1v96a1



99.9 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
5c3zvkC_



99.9 15
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
6c6a7vG_



99.9 30
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
7c6nklA_



99.9 17
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
8c3tndC_



99.9 18
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
9c3dboB_



99.9 21
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
10d1y82a1



99.8 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
11d2h1ca1



99.8 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c5l6mC_



99.8 17
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
13c4xgrG_



99.8 16
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14c5x3tD_



99.5 21
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
15c5wzfB_



99.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
16d2fe1a1



99.4 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c2fe1A_



99.4 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
18c5f4hF_



99.3 15
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
19c5ywwA_



99.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
20c3ix7A_



99.2 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
21c3i8oA_



not modelled 99.1 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22d1o4wa_



not modelled 98.7 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
23d1v8pa_



not modelled 98.5 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c1v8pK_



not modelled 98.5 17
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
25c2lcqA_



not modelled 98.3 15
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
26c2hwwC_



not modelled 98.0 13
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
27d1w8ia_



not modelled 97.9 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
28c5yz4A_



not modelled 97.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 97.5 19
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c4mj7B_



not modelled 92.2 18
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
31c2hwyB_



not modelled 89.9 15
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c6g5iy_



not modelled 89.7 20
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
33c3v33A_



not modelled 86.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
34c3v32B_



not modelled 84.7 24
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
35d1cmwa2



not modelled 62.3 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36c3zddA_



not modelled 54.6 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
37d1tfra2



not modelled 34.0 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
38d1xo1a2



not modelled 26.1 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c1sy9B_



not modelled 21.6 36
PDB header:calcium-binding protein
Chain: B: PDB Molecule:cyclic-nucleotide-gated olfactory channel;
PDBTitle: structure of calmodulin complexed with a fragment of the2 olfactory cng channel
40c1ut8B_



not modelled 18.0 26
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
41c4mitG_



not modelled 17.6 29
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
42d1a77a2



not modelled 14.7 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
43c1cmwA_



not modelled 14.4 26
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
44c2wqfA_



not modelled 13.6 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper induced nitroreductase d;
PDBTitle: crystal structure of the nitroreductase cind from2 lactococcus lactis in complex with fmn
45c2qipA_



not modelled 13.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
46c3eofB_



not modelled 12.7 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_213212.1) from2 bacteroides fragilis nctc 9343 at 1.99 a resolution
47c2ihnA_



not modelled 12.4 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
48c3q8lA_



not modelled 12.2 11
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
49d1ul1x2



not modelled 11.5 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
50d1bkja_



not modelled 11.0 19
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
51c5hdjA_



not modelled 10.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:nfra1;
PDBTitle: structure of b. megaterium nfra1
52d1zcha1



not modelled 9.1 17
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
53c5heiE_



not modelled 8.6 17
PDB header:oxidoreductase
Chain: E: PDB Molecule:nfra2;
PDBTitle: structure of b. megaterium nfra2
54d2bodx1



not modelled 8.5 38
Fold:7-stranded beta/alpha barrel
Superfamily:Glycosyl hydrolases family 6, cellulases
Family:Glycosyl hydrolases family 6, cellulases
55c2n22B_



not modelled 8.2 23
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain of p65
56c3bm2B_



not modelled 7.5 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein ydja;
PDBTitle: crystal structure of a minimal nitroreductase ydja from escherichia2 coli k12 with and without fmn cofactor
57d2cxaa1



not modelled 7.0 10
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:LFTR-like
58c2cxaA_



not modelled 7.0 10
PDB header:transferase
Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase;
PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli
59c6faoA_



not modelled 6.7 50
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 6;
PDBTitle: discovery and characterization of a thermostable gh6 endoglucanase2 from a compost metagenome
60d1ywqa1



not modelled 6.6 25
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
61d1qjwa_



not modelled 6.5 25
Fold:7-stranded beta/alpha barrel
Superfamily:Glycosyl hydrolases family 6, cellulases
Family:Glycosyl hydrolases family 6, cellulases
62c5jx6C_



not modelled 6.5 75
PDB header:hydrolase
Chain: C: PDB Molecule:glucanase;
PDBTitle: gh6 orpinomyces sp. y102 enzyme
63c1b43A_



not modelled 6.3 9
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
64c5urnB_



not modelled 6.2 23
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain 1 of p65
65d1txka2



not modelled 6.2 19
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:MdoG-like
66d1mc8a2



not modelled 6.0 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
67c4urpB_



not modelled 6.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:fatty acid repression mutant protein 2;
PDBTitle: the crystal structure of nitroreductase from saccharomyces2 cerevisiae
68d1rxwa2



not modelled 5.9 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
69c5gkeB_



not modelled 5.8 27
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
70c3gr3B_



not modelled 5.7 11
PDB header:flavoprotein
Chain: B: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a nitroreductase-like family protein (pnba,2 bh06130) from bartonella henselae str. houston-1 at 1.45 a resolution
71c5xczA_



not modelled 5.7 38
PDB header:hydrolase
Chain: A: PDB Molecule:glucanase;
PDBTitle: structure of the cellobiohydrolase cel6a from phanerochaete2 chrysosporium in complex with cellobiose at 2.1 angstrom
72c6c34A_



not modelled 5.5 11
PDB header:dna binding protein
Chain: A: PDB Molecule:5'-3' exonuclease;
PDBTitle: mycobacterium smegmatis dna flap endonuclease mutant d125n
73c5yaaD_



not modelled 5.3 14
PDB header:hydrolase
Chain: D: PDB Molecule:meiosis regulator and mrna stability factor 1;
PDBTitle: crystal structure of marf1 nyn domain from mus musculus
74c4g25A_



not modelled 5.3 14
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
75c5xyhA_



not modelled 5.2 38
PDB header:hydrolase
Chain: A: PDB Molecule:cbsa;
PDBTitle: crystal structure of catalytic domain of 1,4-beta-cellobiosidase2 (cbsa) from xanthomonas oryzae pv. oryzae
76c2wzvB_



not modelled 5.2 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:nfnb protein;
PDBTitle: crystal structure of the fmn-dependent nitroreductase nfnb2 from mycobacterium smegmatis

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