Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2549c_(-)_2869737_2870132
DateWed Aug 7 12:50:18 BST 2019
Unique Job ID07ff7aaa0849e412
SequenceMIFVDTSFWA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.524 Y:34.411 Z:42.414
Model (left) based on template c5wzfB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
Confidence and coverage
Confidence:100.0% Coverage: 98%
128 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wzfB_



100.0 92
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
2d1w8ia_



99.9 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3c5x3tD_



99.9 20
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
4c4xgrG_



99.9 16
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
5d2h1ca1



99.8 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c3zvkC_



99.7 11
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
7c5l6mC_



99.7 12
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
8c6a7vG_



99.7 17
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
9c6nklA_



99.7 10
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
10c3tndC_



99.6 13
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
11d2fe1a1



99.5 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c2fe1A_



99.5 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
13c3h87B_



99.5 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
14d1v96a1



99.5 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
15c4chgC_



99.5 15
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
16c3dboB_



99.4 20
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
17c5sv2A_



99.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
18d1y82a1



99.4 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v8pa_



98.7 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c1v8pK_



98.6 20
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
21c3ix7A_



not modelled 97.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22d1o4wa_



not modelled 97.6 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
23c3i8oA_



not modelled 97.4 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
24c2lcqA_



not modelled 96.8 16
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
25c5yz4A_



not modelled 95.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
26c5jpqd_



not modelled 95.6 19
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
27c5ywwA_



not modelled 95.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
28c2hwwC_



not modelled 95.3 16
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
29c5f4hF_



not modelled 95.2 17
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
30c2hwyB_



not modelled 90.2 13
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c4mj7B_



not modelled 82.0 16
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
32c6g5iy_



not modelled 79.6 16
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
33d1a77a2



not modelled 72.4 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
34c1ul1Y_



not modelled 71.4 11
PDB header:hydrolase/dna binding protein
Chain: Y: PDB Molecule:flap endonuclease-1;
PDBTitle: crystal structure of the human fen1-pcna complex
35d1ul1x2



not modelled 65.1 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36d1rxwa2



not modelled 57.9 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37c3q8lA_



not modelled 55.8 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
38c1a77A_



not modelled 55.6 19
PDB header:5'-3' exo/endo nuclease
Chain: A: PDB Molecule:flap endonuclease-1 protein;
PDBTitle: flap endonuclease-1 from methanococcus jannaschii
39c2izoA_



not modelled 53.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
40c1b43A_



not modelled 51.6 16
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
41d1mc8a2



not modelled 51.6 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
42c3v32B_



not modelled 49.0 8
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
43c1rxvA_



not modelled 48.0 16
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna
44c3v33A_



not modelled 47.7 9
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
45c3qeaZ_



not modelled 44.5 25
PDB header:hydrolase/dna
Chain: Z: PDB Molecule:exonuclease 1;
PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii)
46c5t9jB_



not modelled 44.4 19
PDB header:hydrolase
Chain: B: PDB Molecule:flap endonuclease gen homolog 1;
PDBTitle: crystal structure of human gen1 in complex with holliday junction dna2 in the upper interface
47c3zddA_



not modelled 44.3 11
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
48d1b43a2



not modelled 42.7 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
49d1zcza2



not modelled 40.8 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
50c3oryA_



not modelled 40.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus
51c1thzA_



not modelled 40.1 16
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of avian aicar transformylase in complex2 with a novel inhibitor identified by virtual ligand3 screening
52d1pkxa2



not modelled 39.8 19
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
53d1cmwa2



not modelled 39.2 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
54d1g8ma2



not modelled 39.1 16
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
55c1zczA_



not modelled 36.5 23
PDB header:transferase/hydrolase
Chain: A: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of phosphoribosylaminoimidazolecarboxamide2 formyltransferase / imp cyclohydrolase (tm1249) from thermotoga3 maritima at 1.88 a resolution
56c4ehiB_



not modelled 31.9 16
PDB header:hydrolase,transferase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: an x-ray crystal structure of a putative bifunctional2 phosphoribosylaminoimidazolecarboxamide formyltransferase/imp3 cyclohydrolase
57c4a1oB_



not modelled 30.6 16
PDB header:transferase-hydrolase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution.
58c1ut8B_



not modelled 26.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
59c4q0rB_



not modelled 21.3 13
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna repair protein rad2;
PDBTitle: the catalytic core of rad2 (complex i)
60d1tfra2



not modelled 19.7 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
61c4wa8A_



not modelled 16.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: methanopyrus kandleri fen-1 nuclease
62c6c34A_



not modelled 15.8 12
PDB header:dna binding protein
Chain: A: PDB Molecule:5'-3' exonuclease;
PDBTitle: mycobacterium smegmatis dna flap endonuclease mutant d125n
63d1s1da_



not modelled 13.8 19
Fold:5-bladed beta-propeller
Superfamily:Apyrase
Family:Apyrase
64c3e0kA_



not modelled 10.8 19
PDB header:transferase
Chain: A: PDB Molecule:amino-acid acetyltransferase;
PDBTitle: crystal structure of c-termianl domain of n-acetylglutamate synthase2 from vibrio parahaemolyticus
65d3claa_



not modelled 8.5 12
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
66c4gx9A_



not modelled 8.4 14
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iii subunit epsilon,dna polymerase iii
PDBTitle: crystal structure of a dna polymerase iii alpha-epsilon chimera
67d1u9ya1



not modelled 8.0 5
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
68d1oy0a_



not modelled 7.8 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
69d1xo1a2



not modelled 7.4 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
70c1qduI_



not modelled 7.2 19
PDB header:hydrolase/hydrolase inhibitor
Chain: I: PDB Molecule:caspase-8 alpha-chain;
PDBTitle: crystal structure of the complex of caspase-8 with the tripeptide2 ketone inhibitor zevd-dcbmk
71c3p45I_



not modelled 7.0 12
PDB header:hydrolase
Chain: I: PDB Molecule:caspase-6;
PDBTitle: crystal structure of apo-caspase-6 at physiological ph
72d1m3ua_



not modelled 6.8 14
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Ketopantoate hydroxymethyltransferase PanB
73c3wq4A_



not modelled 6.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-primeverosidase;
PDBTitle: crystal structure of beta-primeverosidase
74c3gnoA_



not modelled 6.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:os03g0212800 protein;
PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase
75c3sipC_



not modelled 6.1 12
PDB header:hydrolase/ligase/hydrolase
Chain: C: PDB Molecule:caspase;
PDBTitle: crystal structure of drice and diap1-bir1 complex
76c2i9dC_



not modelled 6.1 26
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
77c3edqC_



not modelled 6.1 9
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:caspase-3;
PDBTitle: crystal structure of caspase-3 with inhibitor ac-ldesd-cho
78d1z4ra1



not modelled 5.9 19
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
79d1tueb_



not modelled 5.8 27
Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
80c4ixoB_



not modelled 5.8 32
PDB header:protein binding
Chain: B: PDB Molecule:nifs-like protein;
PDBTitle: x-ray structure of nifs-like protein from rickettsia africae esf-5
81c4a5uA_



not modelled 5.8 14
PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:rna replicase polyprotein;
PDBTitle: turnip yellow mosaic virus proteinase and escherichia coli 30s2 ribosomal s15
82c3ez4B_



not modelled 5.7 18
PDB header:transferase
Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase;
PDBTitle: crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase2 from burkholderia pseudomallei
83c5ygeA_



not modelled 5.7 23
PDB header:transferase
Chain: A: PDB Molecule:amino-acid acetyltransferase;
PDBTitle: arga complexed with acecoa and glutamate
84d2nnua1



not modelled 5.6 14
Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
85c1tueG_



not modelled 5.3 27
PDB header:replication
Chain: G: PDB Molecule:regulatory protein e2;
PDBTitle: the x-ray structure of the papillomavirus helicase in2 complex with its molecular matchmaker e2
86d3pmga2



not modelled 5.3 23
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
87c5cnqA_



not modelled 5.2 13
PDB header:replication
Chain: A: PDB Molecule:nuclease-like protein;
PDBTitle: crystal structure of the holliday junction-resolving enzyme gen1 (wt)2 in complex with product dna, mg2+ and mn2+ ions
88c2jeuA_



not modelled 5.1 32
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein e2;
PDBTitle: transcription activator structure reveals redox control of a2 replication initiation reaction
89c5jboA_



not modelled 5.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: trichoderma harzianum gh1 beta-glucosidase thbgl2

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