Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2550c_(-)_2870129_2870374
DateWed Aug 7 12:50:18 BST 2019
Unique Job ID4d3a7361cd13545b
SequenceMLVAYICHVK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.459 Y:33.985 Z:45.166
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 94.0% Coverage: 67%
54 residues ( 67% of your sequence) have been modelled with 94.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_



94.0 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2c2h1oH_



59.0 20
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
3c5x3tA_



45.3 28
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
4d2bsqe1



44.2 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
5c1ea4K_



32.0 33
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
6d2cpga_



32.0 33
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
7c4hv0B_



25.6 30
PDB header:transcription, viral protein
Chain: B: PDB Molecule:avtr;
PDBTitle: structure and function of avtr, a novel transcriptional regulator from2 a hyperthermophilic archaeal lipothrixvirus
8d1h9aa2



25.0 24
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
9c1h9aA_



21.6 24
PDB header:oxidoreductase (choh(d) - nad(p))
Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase;
PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp
10c4e9iB_



19.5 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
11c6a6xC_



17.7 46
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
12d1qkia2



16.2 21
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
13d1o51a_



14.9 50
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:DUF190/COG1993
14c4lgvA_



14.4 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
15c6g2jY_



14.0 30
PDB header:oxidoreductase
Chain: Y: PDB Molecule:mcg5603;
PDBTitle: mouse mitochondrial complex i in the active state
16c2kc8B_



13.7 44
PDB header:toxin/toxin repressor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: structure of e. coli toxin rele (r81a/r83a) mutant in2 complex with antitoxin relbc (k47-l79) peptide
17c2bhlB_



13.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase (deletion2 variant) complexed with glucose-6-phosphate
18c1qkiE_



12.5 21
PDB header:oxidoreductase
Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase (variant2 canton r459l) complexed with structural nadp+
19c2kqrA_



11.0 18
PDB header:ligase
Chain: A: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic;
PDBTitle: solution structure of the n-terminal domain (residues 1-111) of brugia2 malayi asparaginyl-trna synthetase
20c2nd4A_



10.6 46
PDB header:hydrolase receptor
Chain: A: PDB Molecule:amylase-binding protein abpa;
PDBTitle: a distinct sortase srtb anchors and processes a streptococcal adhesin2 abpa with a novel structural property
21c2ql8A_



not modelled 10.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative redox protein;
PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution
22c6iyaD_



not modelled 9.9 22
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
23c2ls01_



not modelled 9.5 50
PDB header:hydrolase
Chain: 1: PDB Molecule:zoocin a endopeptidase;
PDB Fragment:unp residues 170-285; PDBTitle: solution structure of the target recognition domain of zoocin a
24c5ldwY_



not modelled 8.1 23
PDB header:oxidoreductase
Chain: Y: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class1
25c5cmyB_



not modelled 7.6 12
PDB header:protein transport
Chain: B: PDB Molecule:epsin-5;
PDBTitle: crystal structure of yeast ent5 n-terminal domain-native
26c5ytpA_



not modelled 7.3 47
PDB header:dna binding protein
Chain: A: PDB Molecule:ttha0139;
PDBTitle: crystal structure of ttha0139 l34a from thermus thermophilus hb8
27d1qwia_



not modelled 7.3 13
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
28d1bh9b_



not modelled 7.1 28
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
29c3cjeA_



not modelled 7.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:osmc-like protein;
PDBTitle: crystal structure of an osmc-like hydroperoxide resistance protein2 (jann_2040) from jannaschia sp. ccs1 at 1.70 a resolution
30d1h8ba_



not modelled 7.0 32
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
31c1lqlE_



not modelled 6.5 21
PDB header:unknown function
Chain: E: PDB Molecule:osmotical inducible protein c like family;
PDBTitle: crystal structure of osmc like protein from mycoplasma2 pneumoniae
32d1lqla_



not modelled 6.5 21
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
33d1vlaa_



not modelled 6.4 21
Fold:OsmC-like
Superfamily:OsmC-like
Family:YhfA-like
34c1g5jB_



not modelled 6.1 71
PDB header:apoptosis
Chain: B: PDB Molecule:bad protein;
PDBTitle: complex of bcl-xl with peptide from bad
35c4mh4B_



not modelled 5.9 21
PDB header:protein binding
Chain: B: PDB Molecule:osmc-like protein;
PDBTitle: crystal structure of osmc-like protein from burkholderia cenocepacia2 j2315
36d1p94a_



not modelled 5.9 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
37c2mdvB_



not modelled 5.8 32
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
38d2gf3a2



not modelled 5.7 11
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:D-aminoacid oxidase-like
39c2rsoA_



not modelled 5.6 47
PDB header:transcription
Chain: A: PDB Molecule:chromatin-associated protein swi6;
PDBTitle: solution structure of the chromodomain of swi6
40d1fexa_



not modelled 5.6 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
41c2rf4B_



not modelled 5.5 33
PDB header:transferase
Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4;
PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43
42c2bjoA_



not modelled 5.5 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:organic hydroperoxide resistance protein ohrb;
PDBTitle: crystal structure of the organic hydroperoxide resistance2 protein ohrb of bacillus subtilis
43c2kelB_



not modelled 5.5 29
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
44d1aqta1



not modelled 5.4 50
Fold:Long alpha-hairpin
Superfamily:Epsilon subunit of F1F0-ATP synthase C-terminal domain
Family:Epsilon subunit of F1F0-ATP synthase C-terminal domain
45c3k9tA_



not modelled 5.4 50
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidase;
PDBTitle: crystal structure of putative peptidase (np_348812.1) from clostridium2 acetobutylicum at 2.37 a resolution
46d1ml8a_



not modelled 5.3 20
Fold:OsmC-like
Superfamily:OsmC-like
Family:YhfA-like
47c5lnkW_



not modelled 5.1 38
PDB header:oxidoreductase
Chain: W: PDB Molecule:mitochondrial complex i, sgdh subunit;
PDBTitle: entire ovine respiratory complex i

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite