Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2553c_(-)_2872022_2873275
DateWed Aug 7 12:50:19 BST 2019
Unique Job ID945861177ab11699
SequenceMPDGGHRHRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.485 Y:50.166 Z:55.859
Model (left) based on template c4iiwB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lmo1499 protein;
PDBTitle: 2.6 angstrom crystal structure of putative yceg-like protein lmo14992 from listeria monocytogenes
Confidence and coverage
Confidence:100.0% Coverage: 73%
304 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4iiwB_



100.0 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lmo1499 protein;
PDBTitle: 2.6 angstrom crystal structure of putative yceg-like protein lmo14992 from listeria monocytogenes
2c2r1fB_



100.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:predicted aminodeoxychorismate lyase;
PDBTitle: crystal structure of predicted aminodeoxychorismate lyase from2 escherichia coli
3c4fetA_



96.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:spore cortex-lytic enzyme prepeptide;
PDBTitle: catalytic domain of germination-specific lytic tansglycosylase sleb2 from bacillus anthracis
4c4f55A_



96.6 27
PDB header:hydrolase
Chain: A: PDB Molecule:spore cortex-lytic enzyme;
PDBTitle: crystal structure of the catalytic domain of the bacillus cereus sleb2 protein
5d3bz6a1



51.4 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PSPTO2686-like
6c2v3sB_



49.8 15
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase osr1;
PDBTitle: structural insights into the recognition of substrates and2 activators by the osr1 kinase
7c5mg3F_



49.8 16
PDB header:chaperone
Chain: F: PDB Molecule:protein translocase subunit secf;
PDBTitle: em fitted model of bacterial holo-translocon
8d1dt9a3



47.1 18
Fold:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Superfamily:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Family:N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
9d1gjja2



40.5 29
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
10d1h9fa_



39.3 29
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
11c3bz6A_



36.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0502 protein pspto_2686;
PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000
12c3e20C_



33.8 15
PDB header:translation
Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
13c5u8jA_



33.3 19
PDB header:unknown function
Chain: A: PDB Molecule:upf0502 protein bfj73_07745;
PDBTitle: crystal structure of a protein of unknown function ecl_02571 involved2 in membrane biogenesis from enterobacter cloacae
14d1jeia_



32.0 14
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
15d1ztwa1



28.7 12
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Reverse transcriptase
16d1e0ga_



27.8 27
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
17d1eg7a_



27.7 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
18c6btmA_



27.3 16
PDB header:membrane protein
Chain: A: PDB Molecule:alternative complex iii subunit a;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
19c1gjjA_



25.5 29
PDB header:membrane protein
Chain: A: PDB Molecule:lap2;
PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2
20c5fimA_



25.2 17
PDB header:unknown function
Chain: A: PDB Molecule:ygau;
PDBTitle: the structure of kbp.k from e. coli
21c6d5fF_



not modelled 24.9 56
PDB header:virus
Chain: F: PDB Molecule:fimbrial protein;
PDBTitle: cryo-em reconstruction of membrane-enveloped filamentous virus sfv12 (sulfolobus filamentous virus 1)
22c3lwfD_



not modelled 24.3 19
PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution
23d1wxqa2



not modelled 24.2 10
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
24c3ipdB_



not modelled 24.1 8
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
25d1l0wa2



not modelled 23.9 32
Fold:DCoH-like
Superfamily:GAD domain-like
Family:GAD domain
26c5x8rx_



not modelled 23.9 33
PDB header:ribosome
Chain: X: PDB Molecule:
PDBTitle: structure of the 30s small subunit of chloroplast ribosome from2 spinach
27c2kogA_



not modelled 23.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
28c3r85F_



not modelled 23.2 21
PDB header:apoptosis
Chain: F: PDB Molecule:heme-binding protein 2;
PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl
29c3do6B_



not modelled 23.1 20
PDB header:ligase
Chain: B: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of putative formyltetrahydrofolate synthetase2 (tm1766) from thermotoga maritima at 1.85 a resolution
30c3r85H_



not modelled 23.0 21
PDB header:apoptosis
Chain: H: PDB Molecule:heme-binding protein 2;
PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl
31c3r85E_



not modelled 22.9 17
PDB header:apoptosis
Chain: E: PDB Molecule:heme-binding protein 2;
PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl
32c2h8kA_



not modelled 22.1 29
PDB header:transferase
Chain: A: PDB Molecule:sult1c3 splice variant d;
PDBTitle: human sulfotranferase sult1c3 in complex with pap
33c6f0kA_



not modelled 22.1 12
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
34c3r85G_



not modelled 22.1 18
PDB header:apoptosis
Chain: G: PDB Molecule:heme-binding protein 2;
PDBTitle: crystal structure of human soul bh3 domain in complex with bcl-xl
35c2zktB_



not modelled 21.3 24
PDB header:isomerase
Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: structure of ph0037 protein from pyrococcus horikoshii
36d2fug13



not modelled 21.2 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Nqo1 middle domain-like
Family:Nqo1 middle domain-like
37c6raoG_



not modelled 19.4 19
PDB header:virus like particle
Chain: G: PDB Molecule:afp7;
PDBTitle: cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold2 symmetrised
38d2bgca1



not modelled 19.1 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
39c6jbzD_



not modelled 18.2 15
PDB header:transferase
Chain: D: PDB Molecule:moad/this family protein;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
40c5a4jC_



not modelled 17.3 25
PDB header:ligase
Chain: C: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of fthfs1 from t.acetoxydans re1
41c3po0A_



not modelled 16.6 12
PDB header:protein binding
Chain: A: PDB Molecule:small archaeal modifier protein 1;
PDBTitle: crystal structure of samp1 from haloferax volcanii
42c6jc0A_



not modelled 16.5 24
PDB header:transferase
Chain: A: PDB Molecule:putative molybdenum cofactor biosynthesis protein d2
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
43c5jceA_



not modelled 16.5 17
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitin elicitor-binding protein;
PDBTitle: crystal structure of oscebip complex
44c2yztA_



not modelled 16.5 5
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha1756;
PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8
45d1uw4a_



not modelled 16.3 31
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Smg-4/UPF3
46c5fwlE_



not modelled 16.0 9
PDB header:chaperone
Chain: E: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: atomic cryoem structure of hsp90-cdc37-cdk4 complex
47c5aweA_



not modelled 15.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative acetoin utilization protein, acetoin
PDBTitle: crystal structure of a hypothetical protein, ttha0829 from thermus2 thermophilus hb8, composed of cystathionine-beta-synthase (cbs) and3 aspartate-kinase chorismate-mutase tyra (act) domains
48c4uplC_



not modelled 15.5 9
PDB header:hydrolase
Chain: C: PDB Molecule:sulfatase family protein;
PDBTitle: dimeric sulfatase spas2 from silicibacter pomeroyi
49c3hd7A_



not modelled 15.4 12
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
50d1nr6a_



not modelled 13.9 33
Fold:Cytochrome P450
Superfamily:Cytochrome P450
Family:Cytochrome P450
51c3vw7A_



not modelled 13.8 14
PDB header:signaling protein/antagonist
Chain: A: PDB Molecule:proteinase-activated receptor 1, lysozyme;
PDBTitle: crystal structure of human protease-activated receptor 1 (par1) bound2 with antagonist vorapaxar at 2.2 angstrom
52c1ezjA_



not modelled 13.7 23
PDB header:viral protein, transferase
Chain: A: PDB Molecule:nucleocapsid phosphoprotein;
PDBTitle: crystal structure of the multimerization domain of the phosphoprotein2 from sendai virus
53c5mpoA_



not modelled 13.7 12
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin synthase sulfur carrier subunit;
PDBTitle: crystal structure of human molybdopterin synthase complex
54c3f1iH_



not modelled 13.7 35
PDB header:protein binding
Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: human escrt-0 core complex
55c3gb8B_



not modelled 13.5 19
PDB header:transport protein
Chain: B: PDB Molecule:snurportin-1;
PDBTitle: crystal structure of crm1/snurportin-1 complex
56c2qieB_



not modelled 13.2 12
PDB header:transferase
Chain: B: PDB Molecule:molybdopterin synthase small subunit;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex with precursor2 z
57d2ysca1



not modelled 13.1 60
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
58c2zomC_



not modelled 12.9 4
PDB header:unknown function
Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed;
PDBTitle: crystal structure of cuta1 from oryza sativa
59c2nuhA_



not modelled 12.9 16
PDB header:unknown function
Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein;
PDBTitle: crystal structure of cuta from the phytopathgen bacterium xylella2 fastidiosa
60c4ug4H_



not modelled 12.8 18
PDB header:hydrolase
Chain: H: PDB Molecule:choline sulfatase;
PDBTitle: crystal structure of a choline sulfatase from sinorhizobium2 melliloti
61c3e4eA_



not modelled 12.8 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p450 2e1;
PDBTitle: human cytochrome p450 2e1 in complex with the inhibitor 4-2 methylpyrazole
62c3wqbB_



not modelled 12.7 18
PDB header:hydrolase/chaperone
Chain: B: PDB Molecule:open reading frame 2;
PDBTitle: crystal structure of aeromonas sobria serine protease (asp) and the2 chaperone (orf2) complex
63d1vjka_



not modelled 12.7 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:MoaD
64d2rc3a1



not modelled 11.8 8
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
65c4p7dA_



not modelled 11.6 14
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
66c4imyH_



not modelled 11.6 0
PDB header:transferase
Chain: H: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the aff4 scaffold binds human p-tefb adjacent to hiv tat
67c4xalA_



not modelled 11.3 13
PDB header:viral protein
Chain: A: PDB Molecule:tegument protein vp22;
PDBTitle: crystal structure of the conserved core domain of vp22 from hsv-1
68c3gbyA_



not modelled 11.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ct1051;
PDBTitle: crystal structure of a protein with unknown function ct10512 from chlorobium tepidum
69c3kopB_



not modelled 11.3 28
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution
70c4imyI_



not modelled 11.1 0
PDB header:transferase
Chain: I: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the aff4 scaffold binds human p-tefb adjacent to hiv tat
71c4imyG_



not modelled 11.1 0
PDB header:transferase
Chain: G: PDB Molecule:af4/fmr2 family member 4;
PDBTitle: the aff4 scaffold binds human p-tefb adjacent to hiv tat
72c5t1aA_



not modelled 10.8 11
PDB header:signaling protein
Chain: A: PDB Molecule:chimera protein of cc chemokine receptor type 2 isoform b
PDBTitle: structure of cc chemokine receptor 2 with orthosteric and allosteric2 antagonists
73c4o2tB_



not modelled 10.7 30
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4827 family protein (bdi_1692) from2 parabacteroides distasonis atcc 8503 at 2.40 a resolution
74d1a9xa1



not modelled 10.4 33
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
75c2zfhA_



not modelled 10.2 6
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cuta;
PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution
76c4u4iA_



not modelled 9.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:cu/zn superoxide dismutase;
PDBTitle: megavirus chilensis superoxide dismutase
77c4p6vF_



not modelled 9.7 14
PDB header:oxidoreductase
Chain: F: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit f;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
78c5wwoB_



not modelled 9.7 11
PDB header:rna binding protein
Chain: B: PDB Molecule:essential nuclear protein 1;
PDBTitle: crystal structure of enp1
79c2m19A_



not modelled 9.5 16
PDB header:protein binding
Chain: A: PDB Molecule:molybdopterin converting factor subunit 1;
PDBTitle: solution structure of the haloferax volcanii hvo 2177 protein
80d1p1la_



not modelled 9.4 20
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
81d1nzaa_



not modelled 9.4 12
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
82d1vhfa_



not modelled 9.4 16
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
83c6m9tA_



not modelled 9.2 11
PDB header:membrane protein
Chain: A: PDB Molecule:prostaglandin e2 receptor ep3 subtype, endolysin chimera;
PDBTitle: crystal structure of ep3 receptor bound to misoprostol-fa
84c3mk7F_



not modelled 9.2 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
85c3ahpA_



not modelled 9.1 16
PDB header:electron transport
Chain: A: PDB Molecule:cuta1;
PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1
86d1ukua_



not modelled 9.0 28
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
87c3a0mF_



not modelled 8.9 33
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
88d1naqa_



not modelled 8.8 8
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
89c4upiA_



not modelled 8.8 9
PDB header:hydrolase
Chain: A: PDB Molecule:sulfatase family protein;
PDBTitle: dimeric sulfatase spas1 from silicibacter pomeroyi
90c5ylwA_



not modelled 8.7 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferruginol synthase;
PDBTitle: cyp76ah1 from salvia miltiorrhiza
91c5k9xA_



not modelled 8.6 16
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: crystal structure of tryptophan synthase alpha chain from legionella2 pneumophila subsp. pneumophila
92c5lnko_



not modelled 8.6 16
PDB header:oxidoreductase
Chain: O: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
93c3v2yA_



not modelled 8.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:sphingosine 1-phosphate receptor 1, lysozyme chimera
PDBTitle: crystal structure of a lipid g protein-coupled receptor at 2.80a
94d1sr8a_



not modelled 8.4 9
Fold:CbiD-like
Superfamily:CbiD-like
Family:CbiD-like
95d1fcqa_



not modelled 8.4 25
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Bee venom hyaluronidase
96c1w9qB_



not modelled 8.4 8
PDB header:cell adhesion
Chain: B: PDB Molecule:syntenin 1;
PDBTitle: crystal structure of the pdz tandem of human syntenin in complex with2 tnefaf peptide
97c1xk5A_



not modelled 8.3 19
PDB header:transport protein
Chain: A: PDB Molecule:snurportin-1;
PDBTitle: crystal structure of the m3g-cap-binding domain of2 snurportin1 in complex with a m3gpppg-cap dinucleotide
98d2ef7a1



not modelled 8.3 17
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
99c3ebsA_



not modelled 8.3 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p450 2a6;
PDBTitle: human cytochrome p450 2a6 i208s/i300f/g301a/s369g in complex2 with phenacetin

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below