Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2560_(-)_2880085_2881062
DateWed Aug 7 12:50:19 BST 2019
Unique Job ID35a75670462662f7
SequenceMSQPPEHPGN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.025 Y:38.777 Z:60.279
Model (left) based on template c4nl6C_
Top template information
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
Confidence and coverage
Confidence: 95.3% Coverage: 25%
81 residues ( 25% of your sequence) have been modelled with 95.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4nl6C_



95.3 21
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
2c6d79A_



56.4 10
PDB header:transport protein
Chain: A: PDB Molecule:sulfate transporter cysz;
PDBTitle: structure of cysz, a sulfate permease from pseudomonas fragi
3c4djiA_



46.7 12
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
4c2kpyA_



41.2 25
PDB header:allergen
Chain: A: PDB Molecule:major pollen allergen art v 1;
PDBTitle: solution structure of the major allergen of artemisia vulgaris (art v2 1)
5c6hwhb_



26.3 16
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
6c5ndaA_



13.4 21
PDB header:protein
Chain: A: PDB Molecule:rsp-c33leu -recombinant pulmonary surfactant-associated
PDBTitle: nmr structural characterisation of pharmaceutically relevant proteins2 obtained through a novel recombinant production: the case of the3 pulmonary surfactant polypeptide c analogue rsp-c33leu.
7c3ixzB_



13.3 18
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
8c3admE_



12.9 62
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
9c3admF_



12.9 62
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
10c3admB_



12.9 62
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
11c3admA_



12.9 62
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
12c5lj7B_



12.3 12
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
13c3abnA_



10.9 62
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
14c3admC_



10.8 60
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
15c3j8eG_



10.5 6
PDB header:transport protein/isomerase
Chain: G: PDB Molecule:ryanodine receptor 1;
PDBTitle: cryo-em structure of ryanodine receptor/calstabin-2 complex
16c4tqvI_



10.4 9
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
17c2jlnA_



10.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
18c5ws4A_



10.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
19c3admD_



9.9 64
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
20c2d3fE_



9.6 62
PDB header:structural protein
Chain: E: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
21c1x1kD_



not modelled 9.6 62
PDB header:structural protein
Chain: D: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
22c1x1kC_



not modelled 9.6 62
PDB header:structural protein
Chain: C: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
23c1x1kB_



not modelled 9.6 62
PDB header:structural protein
Chain: B: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
24c1x1kA_



not modelled 9.6 62
PDB header:structural protein
Chain: A: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
25c2d3fF_



not modelled 9.6 62
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
26c2d3fD_



not modelled 9.6 62
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
27c2cuoF_



not modelled 9.4 52
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
28c2cuoC_



not modelled 9.4 52
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
29d2bcgg2



not modelled 8.2 25
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
30c2nq2A_



not modelled 7.3 15
PDB header:metal transport
Chain: A: PDB Molecule:hypothetical abc transporter permease protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
31c2d3fB_



not modelled 7.2 64
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
32c2d3fA_



not modelled 7.2 64
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
33c1x1kE_



not modelled 7.2 64
PDB header:structural protein
Chain: E: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
34c2d3fC_



not modelled 7.2 64
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
35c3aqpB_



not modelled 6.9 9
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
36c3abnB_



not modelled 6.8 63
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
37c3k07A_



not modelled 6.4 15
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
38c4fzlB_



not modelled 6.3 16
PDB header:antimicrobial protein
Chain: B: PDB Molecule:bacteriocin;
PDBTitle: high resolution structure of truncated bacteriocin syringacin m from2 pseudomonas syringae pv. tomato dc3000
39c2cuoA_



not modelled 6.2 50
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
40c2cuoE_



not modelled 6.2 50
PDB header:structural protein
Chain: E: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
41c2cuoB_



not modelled 6.2 50
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
42c2cuoD_



not modelled 6.2 50
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
43c4yzfA_



not modelled 6.1 11
PDB header:immune system
Chain: A: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the anion exchanger domain of human erythrocyte2 band 3
44d2cvba1



not modelled 6.0 30
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
45c2xzbB_



not modelled 5.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h,k-atpase with bound bef and sch28080
46c3abnC_



not modelled 5.8 59
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
47c5h7yB_



not modelled 5.8 25
PDB header:hydrolase inhibitor/peptide
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of immunity protein tplei of t6ss from pseudomonas2 aeruginosa complexed with "l" peptide
48c5tj6A_



not modelled 5.8 9
PDB header:membrane protein
Chain: A: PDB Molecule:high conductance calcium-activated potassium channel;
PDBTitle: ca2+ bound aplysia slo1
49c4clqB_



not modelled 5.6 13
PDB header:translation
Chain: B: PDB Molecule:ribosome biogenesis protein bms1;
PDBTitle: structure of rcl1p - bms1p complex
50c5mg3D_



not modelled 5.6 16
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
51c3a0aC_



not modelled 5.5 59
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
52c3a0aB_



not modelled 5.5 62
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
53c3ah9A_



not modelled 5.4 50
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
54d1rh5b_



not modelled 5.4 15
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
55c1x1kF_



not modelled 5.4 41
PDB header:structural protein
Chain: F: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
56c3ah9C_



not modelled 5.3 48
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
57c3ah9B_



not modelled 5.3 48
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
58c3ah9E_



not modelled 5.3 48
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
59c3a0aF_



not modelled 5.2 62
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
60c4fzmA_



not modelled 5.2 16
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin;
PDBTitle: crystal structure of the bacteriocin syringacin m from pseudomonas2 syringae pv. tomato dc3000
61c3a1hF_



not modelled 5.1 59
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
62c3a0mA_



not modelled 5.1 64
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal

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