Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2563_(-)_2882300_2883349
DateWed Aug 7 12:50:20 BST 2019
Unique Job ID0b42e683bedcfb80
SequenceMLFAALRDVQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:89.617 Y:82.784 Z:52.337
Model (left) based on template c5ws4A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
Confidence and coverage
Confidence:100.0% Coverage: 99%
347 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ws4A_



100.0 21
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
2c5nikK_



100.0 20
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
3c5xu1M_



100.0 15
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
4c5lj7B_



100.0 18
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
5c5naaB_



98.3 17
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lolc;
PDBTitle: lipoprotein-releasing system transmembrane protein lolc
6c5f9qA_



97.8 15
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein yknz;
PDBTitle: crystal structure of the extracellular domain of noncanonic abc-type2 transporter yknz from gram-positive bacteria
7c5udfB_



97.8 17
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lole;
PDBTitle: structure of the n-terminal domain of lipoprotein-releasing system2 transmembrane protein lole from acinetobacter baumannii
8c3ftjA_



97.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein
PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans
9c5c59F_



96.9 21
PDB header:hydrolase
Chain: F: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of the periplasmic region of macb from e. coli
10c5c59G_



94.8 17
PDB header:hydrolase
Chain: G: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of the periplasmic region of macb from e. coli
11c5x5yF_



90.9 22
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
12c5l75F_



89.9 21
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
13c5x5yG_



87.3 18
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
14c6mjpG_



87.1 19
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
15c6mjpF_



84.9 18
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
16c5l75G_



84.2 19
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
17c1ciiA_



82.8 12
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
18c2yvxD_



76.1 18
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
19d1cola_



71.2 14
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
20c3fewX_



62.3 11
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a duplicated2 receptor binding domain
21d2yvxa3



not modelled 46.3 19
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
22c4aw6B_



not modelled 40.1 11
PDB header:hydrolase
Chain: B: PDB Molecule:caax prenyl protease 1 homolog;
PDBTitle: crystal structure of the human nuclear membrane zinc metalloprotease2 zmpste24 (face1)
23c3is6A_



not modelled 39.0 18
PDB header:transport protein
Chain: A: PDB Molecule:putative permease protein, abc transporter;
PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a
24c4ymuC_



not modelled 38.9 12
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
25c3ltiA_



not modelled 37.7 25
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
26c6btmD_



not modelled 35.2 12
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
27c4av3A_



not modelled 26.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:k(+)-stimulated pyrophosphate-energized sodium pump;
PDBTitle: crystal structure of thermotoga maritima sodium pumping membrane2 integral pyrophosphatase with metal ions in active site
28c5v2sA_



not modelled 22.0 12
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
29c4kbmA_



not modelled 20.3 25
PDB header:transferase/transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: structure of the mtb card/rnap beta subunit b1-b2 domains complex
30c2cwbA_



not modelled 18.8 4
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
31c1wr1B_



not modelled 17.7 4
PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
32d2bwba1



not modelled 16.7 4
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
33d2dnaa1



not modelled 16.6 8
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
34d2r6gg1



not modelled 16.4 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
35c2dahA_



not modelled 16.3 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquilin-3;
PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
36c2dnaA_



not modelled 15.2 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
37d1veja1



not modelled 14.9 16
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
38d2daha1



not modelled 14.7 8
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
39c6f0kD_



not modelled 13.6 12
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
40c5a43B_



not modelled 13.2 19
PDB header:transport protein
Chain: B: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
41c1a87A_



not modelled 12.5 20
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
42d1a87a_



not modelled 12.5 20
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
43c2jy5A_



not modelled 12.1 12
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain
44c4r4eA_



not modelled 11.3 21
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
45c2i88A_



not modelled 11.2 12
PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin e1
46c5a40C_



not modelled 11.1 16
PDB header:transport protein
Chain: C: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
47c2v50A_



not modelled 11.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
48c5xjyA_



not modelled 10.9 14
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family a member 1;
PDBTitle: cryo-em structure of human abca1
49c5jefA_



not modelled 10.3 15
PDB header:transferase
Chain: A: PDB Molecule:nitrate/nitrite sensor protein narq;
PDBTitle: fragment of nitrate/nitrite sensor histidine kinase narq (wt) in2 asymmetric holo state
50d1dv0a_



not modelled 9.9 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
51d1rh1a2



not modelled 9.9 13
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
52d1q08a_



not modelled 9.7 29
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
53c2ndjA_



not modelled 9.0 21
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
54c5klbB_



not modelled 8.5 6
PDB header:transport protein
Chain: B: PDB Molecule:ion transport protein;
PDBTitle: crystal structure of the cavab voltage-gated calcium channel(wild-2 type, 2.7a)
55c6owsB_



not modelled 8.4 17
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
56c6csxA_



not modelled 8.3 20
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
57d1ciia1



not modelled 8.2 16
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
58c5oy0M_



not modelled 8.1 5
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
59c5oy09_



not modelled 8.1 5
PDB header:photosynthesis
Chain: 9: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
60c4l6v7_



not modelled 8.1 5
PDB header:electron transport
Chain: 7: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
61c6hqbM_



not modelled 8.1 5
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: monomeric cyanobacterial photosystem i
62c5oy0m_



not modelled 8.1 5
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
63c4l6vM_



not modelled 8.1 5
PDB header:electron transport
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
64c2jpcA_



not modelled 8.1 23
PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
65c2k29A_



not modelled 7.9 19
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
66c5mg3D_



not modelled 7.9 14
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
67c4il3B_



not modelled 7.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:ste24p;
PDBTitle: crystal structure of s. mikatae ste24p
68c2k21A_



not modelled 7.7 0
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
69c6c90B_



not modelled 7.7 13
PDB header:hydrolase/rna binding protein
Chain: B: PDB Molecule:zinc finger cchc domain-containing protein 8;
PDBTitle: human mtr4 helicase in complex with zcchc8-ctd
70c4r24B_



not modelled 7.7 41
PDB header:transcrption/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator tnra;
PDBTitle: complete dissection of b. subtilis nitrogen homeostatic circuitry
71c5gasN_



not modelled 7.6 12
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
72c4fxeB_



not modelled 7.5 19
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
73d2i76a1



not modelled 7.5 13
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
74d1oqya2



not modelled 7.4 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
75c6ic4H_



not modelled 7.4 20
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
76c3idwA_



not modelled 7.2 13
PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
77c2lorA_



not modelled 7.1 12
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 141;
PDBTitle: backbone structure of human membrane protein tmem141
78c3gp4B_



not modelled 7.1 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes
79c3sztB_



not modelled 7.0 22
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
80c2jnhA_



not modelled 6.8 14
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
81c2ksfA_



not modelled 6.7 16
PDB header:transferase
Chain: A: PDB Molecule:sensor protein kdpd;
PDBTitle: backbone structure of the membrane domain of e. coli histidine kinase2 receptor kdpd, center for structures of membrane proteins (csmp)3 target 4312c
82c3vw4B_



not modelled 6.5 17
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:rep;
PDBTitle: crystal structure of the dna-binding domain of cole2-p9 rep in complex2 with the replication origin
83c5fgnA_



not modelled 6.4 11
PDB header:transferase,hydrolase
Chain: A: PDB Molecule:lipooligosaccharide phosphoethanolamine transferase a;
PDBTitle: integral membrane protein lipooligosaccharide phosphoethanolamine2 transferase a (epta) from neisseria meningitidis
84c5zazA_



not modelled 6.3 29
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
85c4ev6E_



not modelled 6.3 15
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
86c6ithA_



not modelled 6.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
87c1hjpA_



not modelled 6.2 17
PDB header:dna recombination
Chain: A: PDB Molecule:ruva;
PDBTitle: holliday junction binding protein ruva from e. coli
88c2krfB_



not modelled 6.2 17
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
89d1cuka1



not modelled 6.2 14
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
90c2kncA_



not modelled 6.1 9
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
91c6jqsA_



not modelled 6.1 22
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: structure of transcription factor, gere
92c4q2uM_



not modelled 6.1 7
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
93c2m0qA_



not modelled 6.1 6
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
94c2kncB_



not modelled 6.1 12
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
95d1yioa1



not modelled 5.9 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
96c5tw1C_



not modelled 5.9 19
PDB header:transcription activator/transferase/dna
Chain: C: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
97d1l3la1



not modelled 5.8 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
98d1fsea_



not modelled 5.8 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
99c5crlA_



not modelled 5.8 21
PDB header:metal binding protein
Chain: A: PDB Molecule:mercuric resistance operon regulatory protein;
PDBTitle: crystal structure of the transcription activator tn501 merr in complex2 with mercury (ii)

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below