Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2566_(-)_2886383_2889805
DateWed Aug 7 12:50:20 BST 2019
Unique Job IDf9117bae346dcb80
SequenceVPLRPTQVSG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.695 Y:52.393 Z:56.692
Model (left) based on template c3isrB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease;
PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a
Confidence and coverage
Confidence:100.0% Coverage: 24%
269 residues ( 24% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
325 residues ( 29%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3isrB_
100.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease;
PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a
2c6g49A_
99.9 23
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: crystal structure of the periplasmic domain of tgpa from pseudomonas2 aeruginosa
3c4xz7A_
99.3 19
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a tgase
4d1g0da4
99.3 28
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
5d2f4ma1
99.3 21
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
6d2q3za4
99.2 32
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
7d1vjja4
99.2 29
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
8d1ex0a4
99.1 31
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
9d1x3za1
98.6 35
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
10c4u65F_
98.4 27
PDB header:transferase/hydrolase
Chain: F: PDB Molecule:putative cystine protease;
PDBTitle: structure of the periplasmic output domain of the legionella2 pneumophila lapd ortholog cdgs9 in complex with pseudomonas3 fluorescens lapg
11c3kd4A_
98.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative protease;
PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution
12c2qshA_
98.0 16
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna repair protein rad4;
PDBTitle: crystal structure of rad4-rad23 bound to a mismatch dna
13c3eswA_
97.9 34
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
14c1g0dA_
97.5 27
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: crystal structure of red sea bream transglutaminase
15c1l9mB_
97.3 24
PDB header:transferase
Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3;
PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
16c1f13A_
97.2 34
PDB header:coagulation factor
Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen;
PDBTitle: recombinant human cellular coagulation factor xiii
17c1kv3F_
97.2 29
PDB header:transferase
Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: human tissue transglutaminase in gdp bound form
18c4fgpB_
97.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:periplasmic protein;
PDBTitle: legionella pneumophila lapg (egta-treated)
19c2pfrB_
95.0 16
PDB header:transferase
Chain: B: PDB Molecule:arylamine n-acetyltransferase 2;
PDBTitle: human n-acetyltransferase 2
20d1e2ta_
94.8 17
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
21d1r8ga_
not modelled 94.7 15
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
22c3lnbA_
not modelled 93.5 15
PDB header:transferase
Chain: A: PDB Molecule:n-acetyltransferase family protein;
PDBTitle: crystal structure analysis of arylamine n-acetyltransferase c from2 bacillus anthracis
23d1w5ra1
not modelled 93.4 19
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
24d1w4ta1
not modelled 93.3 19
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
25c2vfbA_
not modelled 93.1 19
PDB header:transferase
Chain: A: PDB Molecule:arylamine n-acetyltransferase;
PDBTitle: the structure of mycobacterium marinum arylamine n-2 acetyltransferase
26c3d9wA_
not modelled 92.9 16
PDB header:transferase
Chain: A: PDB Molecule:putative acetyltransferase;
PDBTitle: crystal structure analysis of nocardia farcinica arylamine n-2 acetyltransferase
27c4guzA_
not modelled 92.7 15
PDB header:transferase
Chain: A: PDB Molecule:probable arylamine n-acetyl transferase;
PDBTitle: structure of the arylamine n-acetyltransferase from mycobacterium2 abscessus
28c4dmoB_
not modelled 91.8 16
PDB header:transferase
Chain: B: PDB Molecule:n-hydroxyarylamine o-acetyltransferase;
PDBTitle: crystal structure of the (baccr)nat3 arylamine n-acetyltransferase2 from bacillus cereus reveals a unique cys-his-glu catalytic triad
29d2bsza1
not modelled 91.5 17
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
30c1tt4B_
not modelled 89.8 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cytoplasmic protein;
PDBTitle: structure of np459575, a predicted glutathione synthase from2 salmonella typhimurium
31d1tt4a_
not modelled 89.8 18
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase family 2 (GCS2)
32c4aghA_
not modelled 74.6 11
PDB header:transcription
Chain: A: PDB Molecule:mosub1, transcription cofactor;
PDBTitle: structural features of ssdna binding protein mosub1 from magnaporthe2 oryzae
33c2gwcE_
not modelled 57.4 15
PDB header:ligase
Chain: E: PDB Molecule:glutamate cysteine ligase;
PDBTitle: crystal structure of plant glutamate cysteine ligase in complex with a2 transition state analogue
34c2lzoA_
not modelled 47.0 25
PDB header:toxin
Chain: A: PDB Molecule:ugtx;
PDBTitle: spatial structure of pi-anmtx ugr 9a-1
35c3canA_
not modelled 45.7 45
PDB header:lyase activator
Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme;
PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482
36d2f2ha3
not modelled 44.6 19
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:Putative glucosidase YicI, domain 3
37c3hn5B_
not modelled 43.2 28
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative exported protein bf0290;
PDBTitle: crystal structure of bf0290 (yp_210027.1) from bacteroides fragilis2 nctc 9343 at 1.70 a resolution
38c5td6A_
not modelled 41.5 17
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
39d2z15a1
not modelled 38.2 33
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
40c3evaA_
not modelled 35.5 21
PDB header:transferase
Chain: A: PDB Molecule:rna-directed rna polymerase ns5;
PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine
41d3e9va1
not modelled 34.7 21
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
42c4nkpD_
not modelled 33.8 13
PDB header:chaperone
Chain: D: PDB Molecule:putative extracellular heme-binding protein;
PDBTitle: crystal structure of a putative extracellular heme-binding protein2 (despig_02683) from desulfovibrio piger atcc 29098 at 1.24 a3 resolution
43c4u4hA_
not modelled 33.4 37
PDB header:viral protein
Chain: A: PDB Molecule:tegument protein ul21;
PDBTitle: crystal structure of hsv-1 ul21 n-terminal domain
44c2gpzC_
not modelled 32.8 24
PDB header:hydrolase
Chain: C: PDB Molecule:transthyretin-like protein;
PDBTitle: transthyretin-like protein from salmonella dublin
45c5anrC_
not modelled 32.1 50
PDB header:rna binding protein
Chain: C: PDB Molecule:eukaryotic translation initiation factor 4e transporter;
PDBTitle: structure of a human 4e-t - ddx6 - cnot1 complex
46d1pcfa_
not modelled 32.0 20
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Transcriptional coactivator PC4 C-terminal domain
47d1h8ba_
not modelled 30.3 22
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
48d1w1oa1
not modelled 28.0 16
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Cytokinin dehydrogenase 1
49c2qzbB_
not modelled 27.4 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yfey;
PDBTitle: crystal structure of the uncharacterized protein yfey from escherichia2 coli
50d1h59b_
not modelled 27.1 24
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Growth factor receptor domain
Family:Growth factor receptor domain
51c5o46A_
not modelled 25.0 31
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:iristatin;
PDBTitle: crystal structure of iristatin, a secreted salivary cystatin from the2 hard tick ixodes ricinus
52c2ml7A_
not modelled 24.9 56
PDB header:unknown function
Chain: A: PDB Molecule:specific abundant protein 3;
PDBTitle: ginsentides: characterization, structure and application of a new2 class of highly stable cystine knot peptides in ginseng
53c3mxuA_
not modelled 24.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
54c3fymA_
not modelled 24.8 16
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus
55d1uc2a_
not modelled 24.5 57
Fold:Hypothetical protein PH1602
Superfamily:Hypothetical protein PH1602
Family:Hypothetical protein PH1602
56c5vglA_
not modelled 24.4 18
PDB header:isomerase
Chain: A: PDB Molecule:lachrymatory-factor synthase;
PDBTitle: crystal structure of lachrymatory factor synthase from allium cepa
57c2epgB_
not modelled 24.3 57
PDB header:ligase
Chain: B: PDB Molecule:hypothetical protein ttha1785;
PDBTitle: crystal structure of ttha1785
58d1b63a1
not modelled 24.3 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:DNA gyrase/MutL, second domain
59c2lkyA_
not modelled 24.2 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
60c2z2uA_
not modelled 23.9 32
PDB header:metal binding protein
Chain: A: PDB Molecule:upf0026 protein mj0257;
PDBTitle: crystal structure of archaeal tyw1
61c1rpcA_
not modelled 23.8 60
PDB header:replication inhibitor
Chain: A: PDB Molecule:tricyclic peptide rp 71955;
PDBTitle: solution structure of rp 71955, a new 21 amino acid tricyclic peptide2 active against hiv-1 virus
62c3lssA_
not modelled 23.8 31
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp
63c1rpbA_
not modelled 22.7 60
PDB header:replication inhibitor
Chain: A: PDB Molecule:tricyclic peptide rp 71955;
PDBTitle: solution structure of rp 71955, a new 21 amino acid tricyclic peptide2 active against hiv-1 virus
64d2fd6u3
not modelled 22.2 19
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
65c2kvcA_
not modelled 21.9 33
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
66c3mwzA_
not modelled 21.9 19
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:sialostatin l2;
PDBTitle: crystal structure of the selenomethionine derivative of the l 22,47,2 100 m mutant of sialostatin l2
67c4njkA_
not modelled 21.8 23
PDB header:lyase
Chain: A: PDB Molecule:7-carboxy-7-deazaguanine synthase;
PDBTitle: crystal structure of quee from burkholderia multivorans in complex2 with adomet, 7-carboxy-7-deazaguanine, and mg2+
68c3elyA_
not modelled 21.5 33
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: wesselsbron virus methyltransferase in complex with adohcy
69d1iu4a_
not modelled 21.4 40
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Microbial transglutaminase
70c3gczA_
not modelled 21.2 22
PDB header:transferase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: yokose virus methyltransferase in complex with adomet
71c3nrdB_
not modelled 20.9 22
PDB header:nucleotide binding protein
Chain: B: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution
72c6a42A_
not modelled 20.4 16
PDB header:dna binding protein
Chain: A: PDB Molecule:rna-directed dna polymerase homolog (r1),polyubiquitin-c;
PDBTitle: r1en(5-223)-ubiquitin fusion
73c4uqtB_
not modelled 20.0 36
PDB header:translation
Chain: B: PDB Molecule:pre-mrna-splicing factor cwc26;
PDBTitle: rrm-peptide structure in res complex
74c5zn6D_
not modelled 19.4 22
PDB header:hydrolase
Chain: D: PDB Molecule:alpha-xylosidase mexyl31;
PDBTitle: crystal structure of gh31 alpha-xylosidase from a soil metagenome
75c3iu0A_
not modelled 19.3 40
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: structural basis for zymogen activation and substrate binding of2 transglutaminase from streptomyces mobaraense
76c3qrzC_
not modelled 19.0 47
PDB header:hormone receptor
Chain: C: PDB Molecule:abscisic acid receptor pyl5;
PDBTitle: crystal structure of native abscisic acid receptor pyl5 at 2.62 angstrom
77d2pbza2
not modelled 19.0 15
Fold:ATP-grasp
Superfamily:Glutathione synthetase ATP-binding domain-like
Family:PurP ATP-binding domain-like
78c2pbzC_
not modelled 18.5 15
PDB header:ligase
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of an imp biosynthesis protein purp from2 thermococcus kodakaraensis
79c5mlkB_
not modelled 18.4 19
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: biotin dependent carboxylase acca3 dimer from mycobacterium2 tuberculosis (rv3285)
80c4kmqA_
not modelled 18.1 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2446 protein;
PDBTitle: 1.9 angstrom resolution crystal structure of uncharacterized protein2 lmo2446 from listeria monocytogenes egd-e
81c5f7sA_
not modelled 18.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 31;
PDBTitle: cycloalternan-degrading enzyme from trueperella pyogenes
82d1ddla_
not modelled 18.0 29
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tymoviridae-like VP
83d1hyha2
not modelled 17.8 23
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
84c3lkzB_
not modelled 17.6 37
PDB header:viral protein
Chain: B: PDB Molecule:non-structural protein 5;
PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase
85c6ak0A_
not modelled 17.6 70
PDB header:unknown function
Chain: A: PDB Molecule:cys-leu-gly-val-gly-ser-cys-val-asp-phe-ala-gly-cys-gly-
PDBTitle: solution nmr structure of a new lasso peptide specialicin
86d2nrha1
not modelled 17.6 67
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like
87d1w7ja1
not modelled 17.5 25
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
88c4q6uA_
not modelled 17.5 28
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
89c5x7rB_
not modelled 17.4 18
PDB header:hydrolase, transferase
Chain: B: PDB Molecule:glycoside hydrolase family 31 alpha-glucosidase;
PDBTitle: crystal structure of paenibacillus sp. 598k alpha-1,6-2 glucosyltransferase complexed with isomaltohexaose
90c4xpsA_
not modelled 17.1 9
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of the mutant d365a of pedobacter saltans gh312 alpha-galactosidase complexed with p-nitrophenyl-alpha-3 galactopyranoside
91d1af7a2
not modelled 17.0 29
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Chemotaxis receptor methyltransferase CheR, C-terminal domain
92d1ju8a_
not modelled 17.0 80
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Albumin 1
93d1irza_
not modelled 16.8 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:GARP response regulators
94c1xsiF_
not modelled 16.7 19
PDB header:hydrolase
Chain: F: PDB Molecule:putative family 31 glucosidase yici;
PDBTitle: structure of a family 31 alpha glycosidase
95d1zo0a1
not modelled 16.4 19
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:Ornithine decarboxylase antizyme-like
96d1k8rb_
not modelled 16.3 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
97d1cgta4
not modelled 16.3 17
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
98d1p8ba_
not modelled 16.2 100
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Albumin 1
99d1nyed_
not modelled 15.9 14
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below