Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2569c_(-)_2893474_2894418
DateWed Aug 7 12:50:20 BST 2019
Unique Job IDe66ebbf6f8699f7f
SequenceLSADSSLSLP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.559 Y:53.109 Z:56.547
Model (left) based on template c3isrB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease;
PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a
Confidence and coverage
Confidence:100.0% Coverage: 87%
274 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3isrB_



100.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease;
PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a
2c6g49A_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: crystal structure of the periplasmic domain of tgpa from pseudomonas2 aeruginosa
3c4xz7A_



99.8 21
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a tgase
4d2q3za4



99.7 26
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
5d2f4ma1



99.6 30
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
6d1g0da4



99.6 30
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
7d1vjja4



99.6 34
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
8d1ex0a4



99.6 36
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
9c3kd4A_



99.4 11
PDB header:hydrolase
Chain: A: PDB Molecule:putative protease;
PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution
10d1x3za1



99.3 27
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
11c4u65F_



99.0 17
PDB header:transferase/hydrolase
Chain: F: PDB Molecule:putative cystine protease;
PDBTitle: structure of the periplasmic output domain of the legionella2 pneumophila lapd ortholog cdgs9 in complex with pseudomonas3 fluorescens lapg
12c3eswA_



98.9 25
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
13c1l9mB_



98.8 26
PDB header:transferase
Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3;
PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation
14c2qshA_



98.8 18
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna repair protein rad4;
PDBTitle: crystal structure of rad4-rad23 bound to a mismatch dna
15c1kv3F_



98.8 31
PDB header:transferase
Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: human tissue transglutaminase in gdp bound form
16c1g0dA_



98.8 29
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: crystal structure of red sea bream transglutaminase
17c1f13A_



98.8 34
PDB header:coagulation factor
Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen;
PDBTitle: recombinant human cellular coagulation factor xiii
18c4fgpB_



98.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:periplasmic protein;
PDBTitle: legionella pneumophila lapg (egta-treated)
19c2pfrB_



97.5 16
PDB header:transferase
Chain: B: PDB Molecule:arylamine n-acetyltransferase 2;
PDBTitle: human n-acetyltransferase 2
20d1w4ta1



97.3 15
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
21d1e2ta_



not modelled 97.0 20
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
22c2vfbA_



not modelled 97.0 21
PDB header:transferase
Chain: A: PDB Molecule:arylamine n-acetyltransferase;
PDBTitle: the structure of mycobacterium marinum arylamine n-2 acetyltransferase
23c3lnbA_



not modelled 96.9 15
PDB header:transferase
Chain: A: PDB Molecule:n-acetyltransferase family protein;
PDBTitle: crystal structure analysis of arylamine n-acetyltransferase c from2 bacillus anthracis
24c4guzA_



not modelled 96.8 24
PDB header:transferase
Chain: A: PDB Molecule:probable arylamine n-acetyl transferase;
PDBTitle: structure of the arylamine n-acetyltransferase from mycobacterium2 abscessus
25c3d9wA_



not modelled 96.6 23
PDB header:transferase
Chain: A: PDB Molecule:putative acetyltransferase;
PDBTitle: crystal structure analysis of nocardia farcinica arylamine n-2 acetyltransferase
26c4dmoB_



not modelled 96.5 13
PDB header:transferase
Chain: B: PDB Molecule:n-hydroxyarylamine o-acetyltransferase;
PDBTitle: crystal structure of the (baccr)nat3 arylamine n-acetyltransferase2 from bacillus cereus reveals a unique cys-his-glu catalytic triad
27d1w5ra1



not modelled 96.4 15
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
28d2bsza1



not modelled 96.4 15
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
29d1kbla2



not modelled 50.6 18
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
30d2hlya1



not modelled 47.5 17
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Atu2299-like
31c2avxA_



not modelled 37.6 14
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: solution structure of e coli sdia1-171
32c6bljC_



not modelled 36.8 15
PDB header:ligase
Chain: C: PDB Molecule:serine-trna ligase;
PDBTitle: crystal structure of cytoplasmic serine-trna ligase from naegleria2 fowleri in complex with amp
33c3qo8A_



not modelled 31.8 16
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase from candida albicans
34c3re2A_



not modelled 30.5 17
PDB header:unknown function
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of menin reveals the binding site for mixed lineage2 leukemia (mll) protein
35c4gq6A_



not modelled 27.6 15
PDB header:transcription/transcription inhibitor
Chain: A: PDB Molecule:menin;
PDBTitle: human menin in complex with mll peptide
36d1jvaa3



not modelled 26.6 14
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
37c2lzoA_



not modelled 26.0 43
PDB header:toxin
Chain: A: PDB Molecule:ugtx;
PDBTitle: spatial structure of pi-anmtx ugr 9a-1
38c6h9xA_



not modelled 24.5 24
PDB header:ligase
Chain: A: PDB Molecule:serine--trna ligase;
PDBTitle: klebsiella pneumoniae seryl-trna synthetase in complex with the2 intermediate analog 5'-o-(n-(l-seryl)-sulfamoyl)adenosine
39c3u88B_



not modelled 24.2 14
PDB header:transcription
Chain: B: PDB Molecule:menin;
PDBTitle: crystal structure of human menin in complex with mll1 and ledgf
40c1sryB_



not modelled 24.0 18
PDB header:ligase(synthetase)
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: refined crystal structure of the seryl-trna synthetase from2 thermus thermophilus at 2.5 angstroms resolution
41c6oteA_



not modelled 23.7 11
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase (serrs) from2 cryptosporidium parvum complexed with l-serylsulfamoyl adenosine
42c5td8D_



not modelled 23.3 39
PDB header:replication
Chain: D: PDB Molecule:kinetochore protein spc25;
PDBTitle: crystal structure of an extended dwarf ndc80 complex
43c5vglA_



not modelled 23.1 3
PDB header:isomerase
Chain: A: PDB Molecule:lachrymatory-factor synthase;
PDBTitle: crystal structure of lachrymatory factor synthase from allium cepa
44d1vbga2



not modelled 23.1 23
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
45d1nyed_



not modelled 22.9 22
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
46c3qp1A_



not modelled 22.9 10
PDB header:transcription
Chain: A: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl
47c6d9nA_



not modelled 22.5 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:organic hydroperoxide resistance protein;
PDBTitle: crystal structure of an organic hydroperoxide resistance protein from2 elizabethkingia anophelis with crystallant-derived thiocyanate bound
48c4mh4B_



not modelled 22.4 22
PDB header:protein binding
Chain: B: PDB Molecule:osmc-like protein;
PDBTitle: crystal structure of osmc-like protein from burkholderia cenocepacia2 j2315
49c1vbhA_



not modelled 22.3 17
PDB header:transferase
Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase;
PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize
50d1w7ja1



not modelled 22.0 21
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
51d2ftxa1



not modelled 21.3 39
Fold:Kinetochore globular domain-like
Superfamily:Kinetochore globular domain
Family:Spc25-like
52d1zyma2



not modelled 21.2 25
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
53c2ml7A_



not modelled 20.9 27
PDB header:unknown function
Chain: A: PDB Molecule:specific abundant protein 3;
PDBTitle: ginsentides: characterization, structure and application of a new2 class of highly stable cystine knot peptides in ginseng
54c3mwzA_



not modelled 20.5 13
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:sialostatin l2;
PDBTitle: crystal structure of the selenomethionine derivative of the l 22,47,2 100 m mutant of sialostatin l2
55c5o46A_



not modelled 20.4 38
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:iristatin;
PDBTitle: crystal structure of iristatin, a secreted salivary cystatin from the2 hard tick ixodes ricinus
56c3iz5s_



not modelled 18.5 4
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
57c4nwbA_



not modelled 18.4 19
PDB header:unknown function
Chain: A: PDB Molecule:mrna turnover protein 4;
PDBTitle: crystal structure of mrt4
58c3jsyA_



not modelled 17.7 11
PDB header:ribosomal protein
Chain: A: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: n-terminal fragment of ribosomal protein l10 from methanococcus2 jannaschii
59c3lssA_



not modelled 16.8 14
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp
60c1x4rA_



not modelled 16.6 6
PDB header:apoptosis
Chain: A: PDB Molecule:parp14 protein;
PDBTitle: solution structure of wwe domain in parp14 protein
61c5woyA_



not modelled 16.4 12
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: nmr solution structure of enzyme i (neit) protein using two 4d-spectra
62c2dq0A_



not modelled 16.1 16
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of seryl-trna synthetase from pyrococcus2 horikoshii complexed with a seryl-adenylate analog
63d2d7va1



not modelled 15.7 11
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
64c3idwA_



not modelled 15.5 32
PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
65d1uspa_



not modelled 15.3 17
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
66d1n2fa_



not modelled 15.3 14
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
67d2pn2a1



not modelled 15.2 9
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
68c6ei1A_



not modelled 15.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:zinc finger with ufm1-specific peptidase domain protein;
PDBTitle: crystal structure of the covalent complex between deubiquitinase zufsp2 (zup1) and ubiquitin-pa
69c3sztB_



not modelled 15.0 17
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
70c2ql8A_



not modelled 15.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative redox protein;
PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution
71c3j21k_



not modelled 14.7 13
PDB header:ribosome
Chain: K: PDB Molecule:50s ribosomal protein l14e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
72d1h59b_



not modelled 14.6 24
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Growth factor receptor domain
Family:Growth factor receptor domain
73c6ak0A_



not modelled 14.2 50
PDB header:unknown function
Chain: A: PDB Molecule:cys-leu-gly-val-gly-ser-cys-val-asp-phe-ala-gly-cys-gly-
PDBTitle: solution nmr structure of a new lasso peptide specialicin
74c4nozA_



not modelled 14.1 14
PDB header:protein binding
Chain: A: PDB Molecule:organic hydroperoxide resistance protein;
PDBTitle: crystal structure of an organic hydroperoxide resistance protein from2 burkholderia cenocepacia
75c3j3bq_



not modelled 14.0 18
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
76d1qwia_



not modelled 13.8 20
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
77c1ezaA_



not modelled 13.5 14
PDB header:phosphotransferase
Chain: A: PDB Molecule:enzyme i;
PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure
78c2j0wA_



not modelled 13.2 20
PDB header:transferase
Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3;
PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state)
79c5t1oB_



not modelled 13.1 19
PDB header:transferase
Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase ptsp;
PDBTitle: solution-state nmr and saxs structural ensemble of npr (1-85) in2 complex with ein-ntr (170-424)
80d1h6za2



not modelled 13.1 25
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:Pyruvate phosphate dikinase, central domain
81c1kblA_



not modelled 13.1 18
PDB header:transferase
Chain: A: PDB Molecule:pyruvate phosphate dikinase;
PDBTitle: pyruvate phosphate dikinase
82c6cgqA_



not modelled 13.1 8
PDB header:lyase
Chain: A: PDB Molecule:threonine synthase;
PDBTitle: threonine synthase from bacillus subtilis atcc 6633 with plp and plp-2 ala
83c2hroA_



not modelled 12.9 17
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus
84c3npdA_



not modelled 12.9 30
PDB header:unknown function
Chain: A: PDB Molecule:putative secreted protein;
PDBTitle: crystal structure of a putative secreted protein (pa3611) from2 pseudomonas aeruginosa at 1.60 a resolution
85c5mjrA_



not modelled 12.4 16
PDB header:photosynthesis
Chain: A: PDB Molecule:protein thf1;
PDBTitle: structure of psb29 at 1.55a
86c2kilA_



not modelled 12.2 7
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr structure of the h103g mutant so2144 h-nox domain from2 shewanella oneidensis in the fe(ii)co ligation state
87c4hubG_



not modelled 12.1 24
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the re-refined crystal structure of the haloarcula marismortui large2 ribosomal subunit at 2.4 angstrom resolution: more complete structure3 of the l7/l12 and l1 stalk, l5 and lx proteins
88c6girA_



not modelled 12.0 16
PDB header:cytosolic protein
Chain: A: PDB Molecule:serine--trna ligase, cytoplasmic;
PDBTitle: arabidopsis thaliana cytosolic seryl-trna synthetase
89c1rpcA_



not modelled 12.0 50
PDB header:replication inhibitor
Chain: A: PDB Molecule:tricyclic peptide rp 71955;
PDBTitle: solution structure of rp 71955, a new 21 amino acid tricyclic peptide2 active against hiv-1 virus
90c2uv0G_



not modelled 11.7 16
PDB header:transcription
Chain: G: PDB Molecule:transcriptional activator protein lasr;
PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain bound to its2 autoinducer
91c1rpbA_



not modelled 11.6 50
PDB header:replication inhibitor
Chain: A: PDB Molecule:tricyclic peptide rp 71955;
PDBTitle: solution structure of rp 71955, a new 21 amino acid tricyclic peptide2 active against hiv-1 virus
92c3izcs_



not modelled 11.5 23
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
93c2bjoA_



not modelled 11.0 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:organic hydroperoxide resistance protein ohrb;
PDBTitle: crystal structure of the organic hydroperoxide resistance2 protein ohrb of bacillus subtilis
94c5ancC_



not modelled 10.9 14
PDB header:translation
Chain: C: PDB Molecule:60s acidic ribosomal protein p0;
PDBTitle: mechanism of eif6 release from the nascent 60s ribosomal subunit
95c4xz6A_



not modelled 10.2 14
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/proline abc transporter, periplasmic
PDBTitle: tmox in complex with tmao
96d1u2ca1



not modelled 10.2 43
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Dystroglycan, N-terminal domain
97c1wleB_



not modelled 10.1 20
PDB header:ligase
Chain: B: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate
98c6mjnC_



not modelled 9.6 14
PDB header:oxidoreductase
Chain: C: PDB Molecule:organic hydroperoxide resistance protein;
PDBTitle: crystal structure of an organic hydroperoxide resistance protein osmc,2 predicted redox protein, regulator of sulfide bond formation from3 legionella pneumophila
99d1p5ja_



not modelled 9.6 19
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below