Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2571c_(-)_2894903_2895970
DateWed Aug 7 12:50:21 BST 2019
Unique Job IDa5688d70f55e3b4f
SequenceMSASLLVRTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.287 Y:51.851 Z:49.733
Model (left) based on template c5nvaA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
Confidence and coverage
Confidence: 60.3% Coverage: 31%
111 residues ( 31% of your sequence) have been modelled with 60.3% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5nvaA_



60.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
2c6drhC_



37.8 17
PDB header:toxin
Chain: C: PDB Molecule:adp-ribosyl-(dinitrogen reductase) hydrolase;
PDBTitle: adp-ribosyltransferase toxin/immunity pair
3c5khnB_



30.3 13
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
4c3hfwA_



29.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:protein adp-ribosylarginine hydrolase;
PDBTitle: crystal structure of human adp-ribosylhydrolase 1 (harh1)
5d1otsa_



28.3 13
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
6c2ht2B_



26.4 13
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
7c6ithA_



22.1 25
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
8c6ajjA_



20.1 17
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
9c2l35B_



19.8 50
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
10c2l34A_



19.4 50
PDB header:protein binding
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
11c4wolA_



19.4 50
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
12c2l34B_



19.4 50
PDB header:protein binding
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: structure of the dap12 transmembrane homodimer
13c4wo1D_



18.4 50
PDB header:signaling protein
Chain: D: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
14c4wo1A_



18.4 50
PDB header:signaling protein
Chain: A: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
15c4wo1B_



18.4 50
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
16c4wo1C_



18.4 50
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipid cubic2 phase
17c6csxA_



18.4 16
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
18c6g1qA_



18.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribosylhydrolase like 2;
PDBTitle: adp-ribosylserine hydrolase arh3 of latimeria chalumnae in complex2 with adp-ribose
19c4wolC_



18.0 50
PDB header:signaling protein
Chain: C: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
20c4wolB_



18.0 50
PDB header:signaling protein
Chain: B: PDB Molecule:tyro protein tyrosine kinase-binding protein;
PDBTitle: crystal structure of the dap12 transmembrane domain in lipidic cubic2 phase
21c2yvxD_



not modelled 17.5 19
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
22c3g9dB_



not modelled 15.2 28
PDB header:hydrolase
Chain: B: PDB Molecule:dinitrogenase reductase activacting
PDBTitle: crystal structure glycohydrolase
23c2wocA_



not modelled 14.3 28
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribosyl-[dinitrogen reductase] glycohydrolase;
PDBTitle: crystal structure of the dinitrogenase reductase-activating2 glycohydrolase (drag) from rhodospirillum rubrum
24c3nd0A_



not modelled 13.4 14
PDB header:transport protein
Chain: A: PDB Molecule:sll0855 protein;
PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter
25c2qtyB_



not modelled 12.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:poly(adp-ribose) glycohydrolase arh3;
PDBTitle: crystal structure of mouse adp-ribosylhydrolase 3 (marh3)
26c6iu3A_



not modelled 12.5 11
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
27d1j4na_



not modelled 12.4 10
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
28c2yzwA_



not modelled 12.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribosylglycohydrolase;
PDBTitle: adp-ribosylglycohydrolase-related protein complex
29d1fx8a_



not modelled 11.7 17
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
30c1ldaA_



not modelled 11.7 17
PDB header:transport protein
Chain: A: PDB Molecule:glycerol uptake facilitator protein;
PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
31c4px7A_



not modelled 11.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
32d2f1ka1



not modelled 11.5 14
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:TyrA dimerization domain-like
33c2b6pA_



not modelled 11.4 12
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
34d2g5ca1



not modelled 11.3 5
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:TyrA dimerization domain-like
35c2n90A_



not modelled 11.2 22
PDB header:transferase
Chain: A: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
36c2n90B_



not modelled 11.2 22
PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
37c2mpnB_



not modelled 10.8 23
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
38c2mpnA_



not modelled 10.8 23
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
39c3l39A_



not modelled 10.8 7
PDB header:phosphate-binding protein
Chain: A: PDB Molecule:putative phou-like phosphate regulatory protein;
PDBTitle: crystal structure of putative phou-like phosphate regulatory protein2 (bt4638) from bacteroides thetaiotaomicron vpi-5482 at 1.93 a3 resolution
40c6humQ_



not modelled 10.8 19
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
41d1t5ja_



not modelled 10.7 29
Fold:ADP-ribosylglycohydrolase
Superfamily:ADP-ribosylglycohydrolase
Family:ADP-ribosylglycohydrolase
42c6gctA_



not modelled 10.5 15
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
43c2l35A_



not modelled 9.9 50
PDB header:protein binding
Chain: A: PDB Molecule:dap12-nkg2c_tm;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
44c4mt1A_



not modelled 9.1 13
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
45c6cfwD_



not modelled 9.0 17
PDB header:membrane protein
Chain: D: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
46c3zq6D_



not modelled 9.0 23
PDB header:hydrolase
Chain: D: PDB Molecule:putative arsenical pump-driving atpase;
PDBTitle: adp-alf4 complex of m. therm. trc40
47c6f7hA_



not modelled 8.9 19
PDB header:transport protein
Chain: A: PDB Molecule:aquaporin-10;
PDBTitle: crystal structure of human aqp10
48d1oqwa_



not modelled 8.9 17
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
49c2xq2A_



not modelled 8.8 16
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
50d1ihua1



not modelled 8.8 31
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
51c6mbcB_



not modelled 8.6 13
PDB header:apoptosis
Chain: B: PDB Molecule:df4;
PDBTitle: human bfl-1 in complex with the designed peptide df4
52d1y0ya2



not modelled 8.6 47
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Bacterial dinuclear zinc exopeptidases
53c6bs3A_



not modelled 8.5 31
PDB header:unknown function
Chain: A: PDB Molecule:putative atpase rv3679;
PDBTitle: crystal structure of adp-bound bacterial get3-like a and b in2 mycobacterium tuberculosis
54c6dgaA_



not modelled 8.5 9
PDB header:unknown function
Chain: A: PDB Molecule:rpfr;
PDBTitle: cronobacter turicensis rpfr quorum-sensing receptor rpff interaction2 domain
55d1kpla_



not modelled 8.3 10
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
56c3kjgB_



not modelled 8.2 38
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1
57c6eikE_



not modelled 8.1 17
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
58d1ihua2



not modelled 8.0 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
59c1p58F_



not modelled 7.9 10
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
60c1p58E_



not modelled 7.9 10
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
61c6eznE_



not modelled 7.8 29
PDB header:membrane protein
Chain: E: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
62c2wooC_



not modelled 7.8 23
PDB header:hydrolase
Chain: C: PDB Molecule:atpase get3;
PDBTitle: nucleotide-free form of s. pombe get3
63c4pfsA_



not modelled 7.7 36
PDB header:ligase
Chain: A: PDB Molecule:cobyrinic acid a,c-diamide synthase;
PDBTitle: crystal structure of cobyrinic acid a,c-diamide synthase from2 mycobacterium smegmatis
64c4q25B_



not modelled 7.7 11
PDB header:unknown function
Chain: B: PDB Molecule:phosphate-specific transport system accessory protein phou
PDBTitle: crystal structure of phou from pseudomonas aeruginosa
65d2i9ca1



not modelled 7.6 22
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:RPA1889-like
66c6eikA_



not modelled 7.6 17
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
67c6eikC_



not modelled 7.6 17
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
68c6eikB_



not modelled 7.6 17
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
69c6eikG_



not modelled 7.6 17
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
70c6eikD_



not modelled 7.6 17
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
71c6eikF_



not modelled 7.6 17
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
72c3sokB_



not modelled 7.6 9
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
73c6bs5B_



not modelled 7.5 31
PDB header:unknown function
Chain: B: PDB Molecule:anion transporter;
PDBTitle: crystal structure of amp-pnp-bound bacterial get3-like a and b in2 mycobacterium tuberculosis
74d2pila_



not modelled 7.4 4
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
75c2lzsE_



not modelled 7.4 14
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
76c3endA_



not modelled 7.4 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein
77c3ug7D_



not modelled 7.3 29
PDB header:hydrolase
Chain: D: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii
78c6nhwD_



not modelled 7.3 37
PDB header:immune system
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
79c3ibgF_



not modelled 7.2 31
PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
80d2yvxa3



not modelled 7.2 19
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
81c3jd8A_



not modelled 7.1 16
PDB header:membrane protein
Chain: A: PDB Molecule:niemann-pick c1 protein;
PDBTitle: cryo-em structure of the full-length human npc1 at 4.4 angstrom
82c2m7gA_



not modelled 7.0 14
PDB header:cell adhesion, structural protein, elect
Chain: A: PDB Molecule:geopilin domain 1 protein;
PDBTitle: structure of the type iva major pilin from the electrically conductive2 bacterial nanowires of geobacter sulfurreducens
83c4k0eA_



not modelled 7.0 18
PDB header:transport protein
Chain: A: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
84c5cukA_



not modelled 6.9 17
PDB header:cell invasion
Chain: A: PDB Molecule:ruler protein;
PDBTitle: crystal structure of the pscp ss domain
85c2wojD_



not modelled 6.9 15
PDB header:hydrolase
Chain: D: PDB Molecule:atpase get3;
PDBTitle: adp-alf4 complex of s. cerevisiae get3
86c5jkiA_



not modelled 6.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative lipid phosphate phosphatase yodm;
PDBTitle: crystal structure of the first transmembrane pap2 type2 phosphatidylglycerolphosphate phosphatase from bacillus subtilis
87c4b03D_



not modelled 6.8 10
PDB header:virus
Chain: D: PDB Molecule:dengue virus 1 prm protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
88c4k0eC_



not modelled 6.8 16
PDB header:transport protein
Chain: C: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
89d1ymga1



not modelled 6.7 13
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
90c1ymgA_



not modelled 6.7 13
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: the channel architecture of aquaporin o at 2.2 angstrom resolution
91c2ph1A_



not modelled 6.7 29
PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
92d1k8ib2



not modelled 6.6 30
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
93c3dh4A_



not modelled 6.6 14
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
94c6akmB_



not modelled 6.6 18
PDB header:protein binding
Chain: B: PDB Molecule:sarcolemmal membrane-associated protein;
PDBTitle: crystal structure of slmap-sike1 complex
95c2ki9A_



not modelled 6.6 27
PDB header:membrane protein
Chain: A: PDB Molecule:cannabinoid receptor 2;
PDBTitle: human cannabinoid receptor-2 helix 6
96c5xj6A_



not modelled 6.4 10
PDB header:transferase
Chain: A: PDB Molecule:glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of plsy (ygih), an integral membrane glycerol 3-2 phosphate acyltransferase - the glycerol 3-phosphate form
97c5ireD_



not modelled 6.3 24
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
98c1iijA_



not modelled 6.3 21
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
99c2oltB_



not modelled 6.3 9
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a phou-like protein (so_3770) from shewanella2 oneidensis mr-1 at 2.00 a resolution

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below