Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2576c_(-)_2900236_2900700
DateWed Aug 7 12:50:21 BST 2019
Unique Job ID9db04961f0ab82fe
SequenceVPAGVGNASG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.760 Y:43.235 Z:30.413
Model (left) based on template c2lw3A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
Confidence and coverage
Confidence: 95.2% Coverage: 53%
81 residues ( 53% of your sequence) have been modelled with 95.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lw3A_



95.2 20
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
2c1o0wB_



55.2 18
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of ribonuclease iii (tm1102) from thermotoga2 maritima at 2.0 a resolution
3d2b7va1



54.6 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
4c2n3hA_



51.6 22
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd2 (viz. drb4(81-151))
5c3adiC_



46.2 18
PDB header:gene regulation/rna
Chain: C: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
6c2mdrA_



45.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific adenosine deaminase;
PDBTitle: solution structure of the third double-stranded rna-binding domain2 (dsrbd3) of human adenosine-deaminase adar1
7d1qu6a1



44.0 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
8d1qu6a2



38.5 11
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
9c5dv7C_



37.4 27
PDB header:rna binding protein
Chain: C: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: crystal structure of nf90 tandem dsrbds with dsrna
10d1x49a1



37.3 16
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
11c2khxA_



37.3 13
PDB header:gene regulation,nuclear protein
Chain: A: PDB Molecule:ribonuclease 3;
PDBTitle: drosha double-stranded rna binding motif
12d1whqa_



37.2 38
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
13d1x48a1



37.1 9
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
14c3adjA_



34.4 13
PDB header:gene regulation
Chain: A: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
15d1mzya2



32.9 20
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
16d2dmya1



27.3 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
17c4ce4h_



26.0 15
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
18c2l2nA_



25.8 19
PDB header:rna binding protein, plant protein
Chain: A: PDB Molecule:hyponastic leave 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1
19c2n3gA_



24.2 22
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd1 (viz. drb4(1-72))
20c1w8kA_



24.0 27
PDB header:antigen
Chain: A: PDB Molecule:apical membrane antigen 1;
PDBTitle: crystal structure of apical membrane antigen 1 from2 plasmodium vivax
21c2l33A_



not modelled 23.4 27
PDB header:transcription regulator
Chain: A: PDB Molecule:interleukin enhancer-binding factor 3;
PDBTitle: solution nmr structure of drbm 2 domain of interleukin enhancer-2 binding factor 3 from homo sapiens, northeast structural genomics3 consortium target hr4527e
22c4fusA_



not modelled 22.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:rtx toxins and related ca2+-binding protein;
PDBTitle: the x-ray structure of hahella chejuensis family 48 glycosyl hydrolase
23c3d6xA_



not modelled 22.7 31
PDB header:lyase
Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase;
PDBTitle: crystal structure of campylobacter jejuni fabz
24c3c4tA_



not modelled 22.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer;
PDBTitle: structure of rnaseiiib and dsrna binding domains of mouse dicer
25d1snra2



not modelled 20.8 16
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
26c2ljhA_



not modelled 20.5 30
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific editase adar;
PDBTitle: nmr structure of double-stranded rna-specific editase adar
27c2n3fA_



not modelled 20.2 22
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of both dsrbds of drb4 along with linker (viz.2 drb4(1-153))
28c2luwA_



not modelled 20.1 8
PDB header:hydrolase
Chain: A: PDB Molecule:metalloprotease;
PDBTitle: solution structure of vep c-ter 100
29c2glvA_



not modelled 18.9 31
PDB header:lyase
Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-acyl carrier protein dehydratase;
PDBTitle: crystal structure of (3r)-hydroxyacyl-acyl carrier protein2 dehydratase(fabz) mutant(y100a) from helicobacter pylori
30c5npgA_



not modelled 18.4 14
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious, isoform f;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd1
31c1vw45_



not modelled 17.1 26
PDB header:ribosome
Chain: 5: PDB Molecule:54s ribosomal protein l3, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
32d1o0wa2



not modelled 16.9 16
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
33c1rue4_



not modelled 15.9 19
PDB header:virus
Chain: 4: PDB Molecule:rhinovirus 14;
PDBTitle: rhinovirus 14 site directed mutant n1219a complexed with2 antiviral compound win 52035
34c4wm7D_



not modelled 15.5 36
PDB header:virus
Chain: D: PDB Molecule:vp4;
PDBTitle: crystal structure of human enterovirus d68 in complex with pleconaril
35d1di2a_



not modelled 15.3 24
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
36c5k0uD_



not modelled 15.2 33
PDB header:virus
Chain: D: PDB Molecule:capsid protein vp4;
PDBTitle: cryoem structure of the full virion of a human rhinovirus c
37c4v1ah_



not modelled 15.0 14
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
38c5buyA_



not modelled 14.3 38
PDB header:lyase
Chain: A: PDB Molecule:3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz;
PDBTitle: crystal structure of beta-hydroxyacyl-acyl carrier protein dehydratase2 (fabz) from francisella tularensis
39c3vddD_



not modelled 14.3 28
PDB header:virus
Chain: D: PDB Molecule:protein vp4;
PDBTitle: structure of hrv2 capsid complexed with antiviral compound bta798
40c1jew4_



not modelled 14.3 19
PDB header:virus/receptor
Chain: 4: PDB Molecule:coxsackievirus capsid, coat protein vp4;
PDB Fragment:residues 21-140; PDBTitle: cryo-em structure of coxsackievirus b3(m strain) with its cellular2 receptor, coxsackievirus and adenovirus receptor (car).
41c1dgi4_



not modelled 14.2 23
PDB header:virus/viral protein, receptor
Chain: 4: PDB Molecule:vp4;
PDB Fragment:poliovirus fragments vp1,vp2,vp3,vp4; PDBTitle:
42d1n1ta1



not modelled 14.0 17
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Trypanosoma sialidase, C-terminal domain
43c5fraD_



not modelled 13.7 6
PDB header:sugar binding protein
Chain: D: PDB Molecule:sialidase;
PDBTitle: cbm40_cpf0721-6'sl
44c6aksD_



not modelled 12.8 15
PDB header:virus
Chain: D: PDB Molecule:vp4;
PDBTitle: cryo-em structure of cva10 mature virus
45c5mquD_



not modelled 12.8 12
PDB header:virus
Chain: D: PDB Molecule:vp4;
PDBTitle: crystal structure of bovine enterovirus 2 determined with serial2 femtosecond x-ray crystallography
46c2lrsA_



not modelled 12.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer homolog 1;
PDBTitle: the second dsrbd domain from a. thaliana dicer-like 1
47c1bev4_



not modelled 11.9 22
PDB header:virus
Chain: 4: PDB Molecule:bovine enterovirus coat proteins vp1 to vp4;
PDBTitle: bovine enterovirus vg-5-27
48c3muxB_



not modelled 11.8 38
PDB header:lyase
Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a
49c2lepA_



not modelled 11.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:rhomboid protease glpg 1;
PDBTitle: solution structure of n-terminal cytosolic domain of rhomboid2 intramembrane protease from escherichia coli
50c3m6yA_



not modelled 11.6 38
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution.
51c6govN_



not modelled 11.5 43
PDB header:transcription
Chain: N: PDB Molecule:antitermination protein n;
PDBTitle: structure of the rna polymerase lambda-based antitermination complex
52d2b7ta1



not modelled 11.4 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
53d1ihwa_



not modelled 11.3 14
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
54d1g9ga_



not modelled 11.3 24
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
55d2bw4a2



not modelled 10.9 20
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
56c6iijD_



not modelled 10.3 19
PDB header:viral protein
Chain: D: PDB Molecule:vp4;
PDBTitle: cryo-em structure of cv-a10 mature virion
57c5buxB_



not modelled 10.3 31
PDB header:lyase
Chain: B: PDB Molecule:3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz;
PDBTitle: crystal structure of 3-hydroxyacyl-acp dehydratase (fabz) from2 yersinia pestis with glycerol bound
58c6htuA_



not modelled 10.0 27
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: structure of hstau1 dsrbd3-4 in complex with arf1 rna
59d1u1za_



not modelled 9.9 38
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:FabZ-like
60c4i83A_



not modelled 9.5 44
PDB header:lyase
Chain: A: PDB Molecule:3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz;
PDBTitle: crystal structure of (3r)-hydroxymyristoyl-acp dehydratase from2 neisseria meningitidis fam18
61c4h4gG_



not modelled 9.5 31
PDB header:lyase
Chain: G: PDB Molecule:(3r)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase;
PDBTitle: crystal structure of (3r)-hydroxymyristoyl-[acyl-carrier-protein]2 dehydratase from burkholderia thailandensis e264
62d1uhza_



not modelled 9.2 24
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
63c1tvtA_



not modelled 9.0 36
PDB header:transcription regulation
Chain: A: PDB Molecule:transactivator protein;
PDBTitle: structure of the equine infectious anemia virus tat protein
64d2je8a4



not modelled 8.9 10
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
65d1p4da_



not modelled 8.9 22
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain
66c4oleD_



not modelled 8.8 28
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:next to brca1 gene 1 protein;
PDBTitle: crystal structure of a neighbor of brca1 gene 1 (nbr1) from homo2 sapiens at 2.52 a resolution
67d1x47a1



not modelled 8.6 21
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
68c1kbwA_



not modelled 8.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:major outer membrane protein pan 1;
PDBTitle: crystal structure of the soluble domain of ania from2 neisseria gonorrhoeae
69c4v1ai_



not modelled 8.3 27
PDB header:ribosome
Chain: I: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
70c1yn5B_



not modelled 8.3 33
PDB header:unknown function
Chain: B: PDB Molecule:eaph2;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
71c5npaA_



not modelled 8.3 17
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd2
72c2l3jA_



not modelled 8.2 27
PDB header:hydrolase/rna
Chain: A: PDB Molecule:double-stranded rna-specific editase 1;
PDBTitle: the solution structure of the adar2 dsrbm-rna complex reveals a2 sequence-specific read out of the minor groove
73c3vbhD_



not modelled 8.0 8
PDB header:virus
Chain: D: PDB Molecule:genome polyprotein, capsid protein vp4;
PDBTitle: crystal structure of formaldehyde treated human enterovirus 71 (space2 group r32)
74d3btaa1



not modelled 8.0 20
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Clostridium neurotoxins, the second last domain
75c5mqoA_



not modelled 7.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: glycoside hydrolase bt_1003
76d1stua_



not modelled 7.8 20
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
77c1qu6A_



not modelled 7.6 19
PDB header:transferase
Chain: A: PDB Molecule:protein kinase pkr;
PDBTitle: structure of the double-stranded rna-binding domain of the2 protein kinase pkr reveals the molecular basis of its3 dsrna-mediated activation
78c3m0zD_



not modelled 7.6 50
PDB header:lyase
Chain: D: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of putative aldolase from klebsiella pneumoniae.
79c3llhB_



not modelled 7.3 23
PDB header:rna binding protein
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2
80d1dpta_



not modelled 7.1 27
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
81d1efca2



not modelled 7.1 13
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
82c4zw0A_



not modelled 7.1 31
PDB header:lyase
Chain: A: PDB Molecule:3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz;
PDBTitle: crystal structure of beta-hydroxyacyl-acyl carrier protein dehydratase2 (fabz) from candidatus asiaticum
83c5b16A_



not modelled 6.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease 3,drosha,ribonuclease 3,drosha,ribonuclease 3;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
84c1yn4A_



not modelled 6.8 50
PDB header:unknown function
Chain: A: PDB Molecule:eaph1;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
85c1yn3A_



not modelled 6.5 56
PDB header:toxin, protein binding
Chain: A: PDB Molecule:truncated cell surface protein map-w;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
86d2g3ra1



not modelled 6.4 14
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
87d1k0ia2



not modelled 6.3 15
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:PHBH-like
88c4kmaA_



not modelled 6.1 22
PDB header:protein binding
Chain: A: PDB Molecule:gm14141p;
PDBTitle: crystal structure of drosophila suppressor of fused
89d1c6vx_



not modelled 6.1 7
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
90c1c6vX_



not modelled 6.1 7
PDB header:dna binding protein
Chain: X: PDB Molecule:protein (siu89134);
PDBTitle: siv integrase (catalytic domain + dna biding domain comprising2 residues 50-293) mutant with phe 185 replaced by his (f185h)
91d1ndsa2



not modelled 6.0 16
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
92c3fhkF_



not modelled 5.8 30
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide isomerase
93c1yywB_



not modelled 5.8 17
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of rnase iii from aquifex aeolicus2 complexed with double stranded rna at 2.8-angstrom3 resolution
94c4f2fA_



not modelled 5.7 12
PDB header:metal binding protein
Chain: A: PDB Molecule:cation-transporting atpase, e1-e2 family protein;
PDBTitle: crystal structure of the metal binding domain (mbd) of the2 streptococcus pneumoniae d39 cu(i) exporting p-type atpase copa with3 cu(i)
95c6gmaA_



not modelled 5.7 14
PDB header:protein binding
Chain: A: PDB Molecule:rb1-inducible coiled-coil protein 1;
PDBTitle: crystal structure of the fip200 c-terminal region
96c6qsrB_



not modelled 5.6 38
PDB header:biosynthetic protein
Chain: B: PDB Molecule:beta-hydroxyacyl-(acyl-carrier-protein) dehydratase
PDBTitle: the dehydratase heterocomplex apei:p from xenorhabdus doucetiae
97d1wlna1



not modelled 5.5 17
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
98c2yt4A_



not modelled 5.4 19
PDB header:rna binding protein
Chain: A: PDB Molecule:protein dgcr8;
PDBTitle: crystal structure of human dgcr8 core
99c5fceB_



not modelled 5.4 44
PDB header:cell adhesion
Chain: B: PDB Molecule:lpxtg family cell surface protein fms2;
PDBTitle: the crystal structure of the ligand binding region of serine-glutamate2 repeat protein a (sgra) of enterococcus faecium

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