Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2582_(ppiB)_2906824_2907750
DateWed Aug 7 12:50:22 BST 2019
Unique Job ID9fb21f678e26238a
SequenceMGHLTPVAAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.637 Y:41.708 Z:53.208
Model (left) based on template c5ex1E_
Top template information
PDB header:isomerase
Chain: E: PDB Molecule:peptidyl-prolyl cis-trans isomerase cyclophilin type;
PDBTitle: crystal structure of cyclophilin aquacyp300 from hirschia baltica
Confidence and coverage
Confidence:100.0% Coverage: 60%
186 residues ( 60% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ex1E_
100.0 21
PDB header:isomerase
Chain: E: PDB Molecule:peptidyl-prolyl cis-trans isomerase cyclophilin type;
PDBTitle: crystal structure of cyclophilin aquacyp300 from hirschia baltica
2c4r3fA_
100.0 30
PDB header:isomerase
Chain: A: PDB Molecule:spliceosomal protein cwc27;
PDBTitle: structure of the spliceosomal peptidyl-prolyl cis-trans isomerase2 cwc27 from chaetomium thermophilum
3c5ex2A_
100.0 22
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of cyclophilin aquacyp293 from hirschia baltica
4c2k7nA_
100.0 31
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase-like 1;
PDBTitle: solution structure of the ppil1 bound to a fragment of skip
5c3rfyA_
100.0 28
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase cyp38, chloroplastic;
PDBTitle: crystal structure of arabidopsis thaliana cyclophilin 38 (atcyp38)
6d2a2na1
100.0 31
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
7c3bo7D_
100.0 24
PDB header:isomerase/immunosuppressant
Chain: D: PDB Molecule:peptidyl-prolyl cis-trans isomerase cyclophilin-type;
PDBTitle: crystal structure of toxoplasma gondii peptidyl-prolyl cis-trans2 isomerase, 541.m00136
8d2fu0a1
100.0 30
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
9d1zkca1
100.0 33
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
10c1ihgA_
100.0 27
PDB header:isomerase
Chain: A: PDB Molecule:cyclophilin 40;
PDBTitle: bovine cyclophilin 40, monoclinic form
11c2hq6A_
100.0 29
PDB header:isomerase
Chain: A: PDB Molecule:serologically defined colon cancer antigen 10;
PDBTitle: structure of the cyclophilin_cecyp16-like domain of the serologically2 defined colon cancer antigen 10 from homo sapiens
12d2b71a1
100.0 32
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
13c2b71A_
100.0 32
PDB header:isomerase
Chain: A: PDB Molecule:cyclophilin-like protein;
PDBTitle: plasmodium yoelii cyclophilin-like protein
14d1xwna1
100.0 31
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
15c5jheA_
100.0 28
PDB header:chaperone
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase cyp7;
PDBTitle: the crystal structure of the saccharomyces cerevisiae co-chaperone2 cpr7
16d1w74a_
100.0 39
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
17d1ihga2
100.0 27
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
18d2ok3a1
100.0 35
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
19d1v9ta_
100.0 30
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
20c3s6mA_
100.0 28
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: the structure of a peptidyl-prolyl cis-trans isomerase from2 burkholderia pseudomallei
21c2qerA_
not modelled 100.0 28
PDB header:isomerase
Chain: A: PDB Molecule:cyclophilin-like protein, putative;
PDBTitle: crystal structure of cryptosporidium parvum cyclophilin type peptidyl-2 prolyl cis-trans isomerase cgd2_1660 in the presence of dipeptide3 ala-pro
22d1xo7a_
not modelled 100.0 29
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
23c3jb9d_
not modelled 100.0 32
PDB header:rna binding protein/rna
Chain: D: PDB Molecule:small nuclear ribonucleoprotein sm d3;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
24d1lopa_
not modelled 100.0 29
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
25d1z81a1
not modelled 100.0 29
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
26c1z81A_
not modelled 100.0 29
PDB header:isomerase
Chain: A: PDB Molecule:cyclophilin;
PDBTitle: crystal structure of cyclophilin from plasmodium yoelii.
27c2poyB_
not modelled 100.0 29
PDB header:isomerase/immunosuppressant
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: cryptosporidium parvum cyclophilin type peptidyl-prolyl cis-trans2 isomerase cgd2_4120 in complex with cyclosporin a
28c3bkpA_
not modelled 100.0 30
PDB header:isomerase
Chain: A: PDB Molecule:cyclophilin;
PDBTitle: crystal structure of the toxoplasma gondii cyclophilin, 49.m03261
29d2rmca_
not modelled 100.0 30
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
30d2r99a1
not modelled 100.0 33
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
31c2he9B_
not modelled 100.0 25
PDB header:isomerase
Chain: B: PDB Molecule:nk-tumor recognition protein;
PDBTitle: structure of the peptidylprolyl isomerase domain of the human nk-2 tumour recognition protein
32d1cyna_
not modelled 100.0 27
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
33d2esla1
not modelled 100.0 30
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
34c3k2cA_
not modelled 100.0 26
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of peptidyl-prolyl cis-trans isomerase from2 encephalitozoon cuniculi at 1.9 a resolution
35d2cfea1
not modelled 100.0 30
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
36c2ck1A_
not modelled 100.0 29
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase e;
PDBTitle: the structure of oxidised cyclophilin a from s. mansoni
37d2z6wa1
not modelled 100.0 30
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
38d2igva1
not modelled 100.0 29
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
39d1a33a_
not modelled 100.0 29
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
40d1vdna1
not modelled 100.0 28
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
41c4i9yC_
not modelled 100.0 29
PDB header:transport protein
Chain: C: PDB Molecule:e3 sumo-protein ligase ranbp2;
PDBTitle: structure of the c-terminal domain of nup358
42d1qnga_
not modelled 100.0 29
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
43d1h0pa_
not modelled 100.0 28
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
44c5ybaC_
not modelled 100.0 30
PDB header:isomerase
Chain: C: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: dimeric cyclophilin from t.vaginalis in complex with myb1 peptide
45d1w8ma_
not modelled 100.0 28
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
46d1qoia_
not modelled 100.0 31
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
47c2mvzA_
not modelled 100.0 35
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: solution structure for cyclophilin a from geobacillus kaustophilus
48c2oseA_
not modelled 100.0 23
PDB header:isomerase
Chain: A: PDB Molecule:probable peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of the mimivirus cyclophilin
49c5mqfo_
not modelled 100.0 38
PDB header:splicing
Chain: O: PDB Molecule:crooked neck-like protein 1;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
50d2c3ba1
not modelled 100.0 24
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
51c2nnzA_
not modelled 95.2 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus
52c3kopB_
not modelled 89.2 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution
53d1x7fa1
not modelled 80.7 18
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Outer surface protein, C-terminal domain
54c2p0oA_
not modelled 74.8 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf871;
PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function
55c1x7fA_
not modelled 71.6 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:outer surface protein;
PDBTitle: crystal structure of an uncharacterized b. cereus protein
56c5dudA_
not modelled 54.6 16
PDB header:unknown function
Chain: A: PDB Molecule:ybgk;
PDBTitle: crystal structure of e. coli ybgjk
57d1zx8a1
not modelled 48.3 18
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:TM1367-like
58c2khfA_
not modelled 29.5 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:plnj;
PDBTitle: plantaricin j in dpc-micelles
59c3mmlE_
not modelled 29.3 19
PDB header:hydrolase
Chain: E: PDB Molecule:allophanate hydrolase subunit 2;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
60c2khgA_
not modelled 26.4 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:plnj;
PDBTitle: plantaricin j in tfe
61c6oegY_
not modelled 22.8 15
PDB header:translocase
Chain: Y: PDB Molecule:type iv secretion system apparatus protein cagx;
PDBTitle: structure of cagx from a cryo-em reconstruction of a t4ss
62c5wstA_
not modelled 22.7 16
PDB header:motor protein
Chain: A: PDB Molecule:unconventional myosin-viia;
PDBTitle: crystal structure of myo7a sah
63c2kimA_
not modelled 21.0 17
PDB header:transferase
Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase;
PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-methylguanine2 dna methyltransferase family protein from vibrio parahaemolyticus.3 northeast structural genomics consortium target vpr247.
64c3gx4X_
not modelled 19.7 14
PDB header:dna binding protein/dna
Chain: X: PDB Molecule:alkyltransferase-like protein 1;
PDBTitle: crystal structure analysis of s. pombe atl in complex with dna
65c2x5rA_
not modelled 18.0 40
PDB header:viral protein
Chain: A: PDB Molecule:hypothetical protein orf126;
PDBTitle: crystal structure of the hypothetical protein orf126 from pyrobaculum2 spherical virus
66d1sfea1
not modelled 17.5 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
67c5eurC_
not modelled 16.5 29
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: hypothetical protein sf216 from shigella flexneri 5a m90t
68c3x27C_
not modelled 15.2 10
PDB header:lyase
Chain: C: PDB Molecule:cucumopine synthase;
PDBTitle: structure of mcbb in complex with tryptophan
69d1qnta1
not modelled 13.2 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
70c3f5hB_
not modelled 12.1 18
PDB header:protein binding
Chain: B: PDB Molecule:type i polyketide synthase pikaiii, type i polyketide
PDBTitle: crystal structure of fused docking domains from pikaiii and pikaiv of2 the pikromycin polyketide synthase
71c2d46A_
not modelled 11.8 18
PDB header:metal transport
Chain: A: PDB Molecule:calcium channel, voltage-dependent, beta 4
PDBTitle: solution structure of the human beta4a-a domain
72d1x0ha1
not modelled 11.5 21
Fold:RGC domain-like
Superfamily:RGC domain-like
Family:RGC domain
73c5nj8D_
not modelled 11.2 16
PDB header:transcription
Chain: D: PDB Molecule:aryl hydrocarbon receptor nuclear translocator;
PDBTitle: structural basis for aryl hydrocarbon receptor mediated gene2 activation
74c1oqyA_
not modelled 10.1 14
PDB header:replication
Chain: A: PDB Molecule:uv excision repair protein rad23 homolog a;
PDBTitle: structure of the dna repair protein hhr23a
75c3oepA_
not modelled 9.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0988;
PDBTitle: crystal structure of ttha0988 in space group p43212
76d1xrsb2
not modelled 9.5 57
Fold:Dodecin subunit-like
Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
77c6eu1Q_
not modelled 8.7 29
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7;
PDBTitle: rna polymerase iii - open dna complex (oc-pol3)
78c5zm8A_
not modelled 8.5 19
PDB header:lipid transport
Chain: A: PDB Molecule:oxysterol-binding protein-related protein 2;
PDBTitle: crystal structure of orp2-ord in complex with pi(4,5)p2
79c1z8yI_
not modelled 7.3 36
PDB header:virus
Chain: I: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
80c1z8yO_
not modelled 7.3 36
PDB header:virus
Chain: O: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
81c1z8yK_
not modelled 7.3 36
PDB header:virus
Chain: K: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
82c1z8yM_
not modelled 7.3 36
PDB header:virus
Chain: M: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
83c2kncB_
not modelled 7.3 17
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
84c5z08D_
not modelled 6.5 29
PDB header:cell cycle
Chain: D: PDB Molecule:cenp-h;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
85d1m4ma_
not modelled 6.5 24
Fold:Inhibitor of apoptosis (IAP) repeat
Superfamily:Inhibitor of apoptosis (IAP) repeat
Family:Inhibitor of apoptosis (IAP) repeat
86c2j98A_
not modelled 6.3 21
PDB header:rna binding protein
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: human coronavirus 229e non structural protein 9 cys69ala mutant (nsp9)
87c2m1aA_
not modelled 6.3 42
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 rev arginine-rich motif (arm);
PDBTitle: hiv-1 rev arm peptide (residues t34-r50)
88c2vdaA_
not modelled 6.3 29
PDB header:protein transport
Chain: A: PDB Molecule:translocase subunit seca;
PDBTitle: solution structure of the seca-signal peptide complex
89c4uaqA_
not modelled 6.0 39
PDB header:protein transport
Chain: A: PDB Molecule:protein translocase subunit seca 2;
PDBTitle: crystal structure of the accessory translocation atpase, seca2, from2 mycobacterium tuberculosis
90c6qbzA_
not modelled 5.9 26
PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosome hibernation promoting factor;
PDBTitle: solution structure of the n-terminal domain of the staphylococcus2 aureus hibernation promoting factor
91c1kuzB_
not modelled 5.9 33
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: solution structure of the membrane proximal regions of2 alpha-iib and beta-3 integrins
92c5mmjy_
not modelled 5.8 9
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
93c2rqlA_
not modelled 5.7 30
PDB header:translation
Chain: A: PDB Molecule:probable sigma-54 modulation protein;
PDBTitle: solution structure of the e. coli ribosome hibernation2 promoting factor hpf
94c3m0aD_
not modelled 5.6 55
PDB header:signaling protein
Chain: D: PDB Molecule:baculoviral iap repeat-containing protein 3;
PDBTitle: crystal structure of traf2:ciap2 complex
95c4rgwA_
not modelled 5.6 37
PDB header:transferase/transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 1;
PDBTitle: crystal structure of a taf1-taf7 complex in human transcription factor2 iid
96d2qfaa1
not modelled 5.5 29
Fold:Inhibitor of apoptosis (IAP) repeat
Superfamily:Inhibitor of apoptosis (IAP) repeat
Family:Inhibitor of apoptosis (IAP) repeat
97d1l4sa_
not modelled 5.3 35
Fold:Ribosome binding protein Y (YfiA homologue)
Superfamily:Ribosome binding protein Y (YfiA homologue)
Family:Ribosome binding protein Y (YfiA homologue)
98d1imua_
not modelled 5.2 33
Fold:Ribosome binding protein Y (YfiA homologue)
Superfamily:Ribosome binding protein Y (YfiA homologue)
Family:Ribosome binding protein Y (YfiA homologue)
99c4zyeA_
not modelled 5.0 27
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of sulfolobus solfataricus o6-methylguanine2 methyltransferase

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Transmembrane helix prediction 

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