Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2585c_(-)_2911014_2912687
DateWed Aug 7 12:50:22 BST 2019
Unique Job ID9ba2916c2018a872
SequenceVAPRRRRHTR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.952 Y:83.033 Z:51.895
Model (left) based on template c4onyB_
Top template information
PDB header:transport protein
Chain: B: PDB Molecule:extracellular solute-binding protein family 5;
PDBTitle: crystal structure of a abc transporter, periplasmic substrate-binding2 protein from brucella melitensis
Confidence and coverage
Confidence:100.0% Coverage: 86%
480 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4onyB_
100.0 17
PDB header:transport protein
Chain: B: PDB Molecule:extracellular solute-binding protein family 5;
PDBTitle: crystal structure of a abc transporter, periplasmic substrate-binding2 protein from brucella melitensis
2c4oetA_
100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:putative peptide abc-transport system periplasmic peptide-
PDBTitle: crystal structure of nikz from campylobacter jejuni, unliganded form
3c5isuA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:lmo0135 protein;
PDBTitle: 2.2 angstrom crystal structure of abc transporter substrate binding2 protein ctap (lmo0135) from listeria monocytogenes.
4d1xoca1
100.0 14
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
5c5icqA_
100.0 16
PDB header:periplasmic binding protein
Chain: A: PDB Molecule:methylocystis parvus obbp mbne;
PDBTitle: methanobactin periplasmic binding protein
6c3tpaA_
100.0 15
PDB header:heme binding protein
Chain: A: PDB Molecule:heme-binding protein a;
PDBTitle: structure of hbpa2 from haemophilus parasuis
7c4qfkG_
100.0 14
PDB header:peptide binding protein
Chain: G: PDB Molecule:abc transporter periplasmic peptide-binding protein;
PDBTitle: crystal structure of dipeptide binding protein from pseudoalteromonas2 sp. sm9913
8c4oerA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:nika protein;
PDBTitle: crystal structure of nika from brucella suis, unliganded form
9c6hlxA_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:agaa;
PDBTitle: structure of the pbp agaa in complex with agropinic acid from2 a.tumefacien r10
10d1dpea_
100.0 16
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
11c3m8uA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:heme-binding protein a;
PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg)
12c2grvC_
100.0 19
PDB header:biosynthetic protein
Chain: C: PDB Molecule:lpqw;
PDBTitle: crystal structure of lpqw
13c2wokA_
100.0 16
PDB header:peptide binding protein/peptide
Chain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide binding protein
PDBTitle: clavulanic acid biosynthesis oligopeptide binding protein 2 complexed2 with bradykinin
14d1zlqa1
100.0 14
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
15c6i3gA_
100.0 13
PDB header:peptide binding protein
Chain: A: PDB Molecule:abc transporter, substrate-binding protein, family 5;
PDBTitle: crystal structure of a putative peptide binding protein appa from2 clostridium difficile
16d1jeta_
100.0 16
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
17c3t66A_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein);
PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans
18c5u4oA_
100.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:abc transporter substrate-binding protein;
PDBTitle: a 2.05a x-ray structureof a bacterial extracellular solute-binding2 protein, family 5 for bacillus anthracis str. ames
19c6npoA_
100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:oligopeptide abc transporter, oligopeptide-binding protein;
PDBTitle: crystal structure of oligopeptide abc transporter from bacillus2 anthracis str. ames (substrate-binding domain)
20c6dtfA_
100.0 14
PDB header:peptide binding protein
Chain: A: PDB Molecule:periplasmic oligopeptide-binding protein;
PDBTitle: crystal structure of haemophilus influenzae oppa complex with kkk
21c1ztyA_
not modelled 100.0 13
PDB header:sugar binding protein, signaling protein
Chain: A: PDB Molecule:chitin oligosaccharide binding protein;
PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein
22c2d5wA_
not modelled 100.0 17
PDB header:peptide binding protein
Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein;
PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide
23c5yheA_
not modelled 100.0 15
PDB header:metal binding protein
Chain: A: PDB Molecule:nickel abc transporter substrate-binding protein;
PDBTitle: the crystal structure of staphylococcus aureus cnta in complex with2 staphylopine and cobalt
24c3zs6A_
not modelled 100.0 15
PDB header:peptide binding protein
Chain: A: PDB Molecule:periplasmic oligopeptide-binding protein;
PDBTitle: the structural characterization of burkholderia pseudomallei oppa.
25c3o9pA_
not modelled 100.0 16
PDB header:peptide binding protein/peptide
Chain: A: PDB Molecule:periplasmic murein peptide-binding protein;
PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa
26c3ry3B_
not modelled 100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:putative solute-binding protein;
PDBTitle: putative solute-binding protein from yersinia pestis.
27c2o7jA_
not modelled 100.0 18
PDB header:sugar binding protein
Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic
PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose
28c3ftoA_
not modelled 100.0 14
PDB header:peptide binding protein
Chain: A: PDB Molecule:oligopeptide-binding protein oppa;
PDBTitle: crystal structure of oppa in a open conformation
29d1uqwa_
not modelled 100.0 15
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
30c6epzA_
not modelled 100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic alpha-galactoside-binding protein;
PDBTitle: structure of the periplasmic binding protein melb (atu4661) in complex2 with melibiose from agrobacterium fabrum c58
31c3rqtA_
not modelled 100.0 13
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines
32c4zebA_
not modelled 100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein (agrocinopines a
PDBTitle: pbp acca from a. tumefaciens c58 in complex with agrocinopine a
33d1vr5a1
not modelled 100.0 18
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
34c4pfwA_
not modelled 100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate-binding protein;
PDBTitle: crystal structure of mannohexaose bound oligopeptide abc transporter,2 periplasmic oligopeptide-binding protein (tm1226) from thermotoga3 maritima at 2.2 a resolution
35c4fajA_
not modelled 100.0 14
PDB header:peptide binding protein
Chain: A: PDB Molecule:prgz;
PDBTitle: structure and mode of peptide binding of pheromone receptor prgz
36c4wedA_
not modelled 100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, periplasmic solute-binding protein;
PDBTitle: crystal structure of abc transporter substrate-binding protein from2 sinorhizobium meliloti
37c4gl8B_
not modelled 100.0 13
PDB header:protein transport
Chain: B: PDB Molecule:oligopeptide abc transporter oppaiv;
PDBTitle: x-ray crystal structure of a periplasmic oligopeptide-binding2 protein/oligopeptide abc transporter(oppaiv) from borrelia3 burgdorferi
38c5yybA_
not modelled 100.0 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative abc transporter periplasmic binding protein;
PDBTitle: crystal structure of sialic acid binding protein from haemophilus2 ducreyi with neu5gc
39c5kztB_
not modelled 100.0 17
PDB header:peptide binding protein
Chain: B: PDB Molecule:peptide/nickel transport system substrate-binding protein;
PDBTitle: listeria monocytogenes oppa bound to peptide
40c5ipwA_
not modelled 100.0 14
PDB header:peptide binding protein
Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic oligopeptide-
PDBTitle: oligopeptide-binding protein oppa
41c3lvuB_
not modelled 100.0 19
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein;
PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi
42c3pamB_
not modelled 100.0 16
PDB header:transport protein
Chain: B: PDB Molecule:transmembrane protein;
PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1
43c3o6pA_
not modelled 100.0 18
PDB header:protein binding
Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein;
PDBTitle: crystal structure of peptide abc transporter, peptide-binding protein
44c3l6gA_
not modelled 84.3 19
PDB header:glycine betaine-binding protein
Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding
PDBTitle: crystal structure of lactococcal opuac in its open conformation
45c3tmgA_
not modelled 80.0 23
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter,
PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
46c3chgB_
not modelled 77.4 19
PDB header:ligand binding protein
Chain: B: PDB Molecule:glycine betaine-binding protein;
PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
47c6jf1A_
not modelled 69.5 18
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of the substrate binding protein of a methionine2 transporter from streptococcus pneumoniae
48c5b3kA_
not modelled 66.2 13
PDB header:electron transport
Chain: A: PDB Molecule:uncharacterized protein pa3435;
PDBTitle: c101a mutant of flavodoxin from pseudomonas aeruginosa
49c4q0cA_
not modelled 65.6 13
PDB header:transferase
Chain: A: PDB Molecule:virulence sensor protein bvgs;
PDBTitle: 3.1 a resolution crystal structure of the b. pertussis bvgs2 periplasmic domain
50d1r9la_
not modelled 63.3 20
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
51c2m6rA_
not modelled 59.9 11
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: apo_yqca
52c3nohA_
not modelled 59.5 16
PDB header:peptide binding protein
Chain: A: PDB Molecule:putative peptide binding protein;
PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution
53c4h2dB_
not modelled 57.3 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent diflavin oxidoreductase 1;
PDBTitle: crystal structure of ndor1
54c2rejA_
not modelled 57.2 16
PDB header:choline-binding protein
Chain: A: PDB Molecule:putative glycine betaine abc transporter protein;
PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
55c4xz6A_
not modelled 46.4 15
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/proline abc transporter, periplasmic
PDBTitle: tmox in complex with tmao
56d1ykga1
not modelled 45.2 13
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
57c3f6sI_
not modelled 44.8 14
PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin alternate2 conformers
58c4heqB_
not modelled 38.6 19
PDB header:electron transport
Chain: B: PDB Molecule:flavodoxin;
PDBTitle: the crystal structure of flavodoxin from desulfovibrio gigas
59c2v25B_
not modelled 37.1 13
PDB header:receptor
Chain: B: PDB Molecule:major cell-binding factor;
PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate
60d5nula_
not modelled 36.4 15
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
61d2fz5a1
not modelled 34.4 19
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
62d1e5da1
not modelled 33.4 10
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
63c4yo3G_
not modelled 33.3 24
PDB header:transport protein
Chain: G: PDB Molecule:tssa;
PDBTitle: enteroaggregative escherichia coli tssa n-terminal fragment
64c5vegC_
not modelled 32.4 13
PDB header:electron transport
Chain: C: PDB Molecule:flavodoxin;
PDBTitle: structure of a short-chain flavodoxin associated with a non-canonical2 pdu bacterial microcompartment
65c5gzsA_
not modelled 31.5 8
PDB header:signaling protein
Chain: A: PDB Molecule:ggdef family protein;
PDBTitle: structure of vc protein
66c3woaA_
not modelled 30.7 12
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
67d1f4pa_
not modelled 30.2 24
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
68c6g7cF_
not modelled 29.7 24
PDB header:transport protein
Chain: F: PDB Molecule:impa-related domain protein;
PDBTitle: nt2-ctd domains of the tssa component from the type vi secretion2 system of aeromonas hydrophila.
69c6fsiA_
not modelled 29.7 6
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: crystal structure of semiquinone flavodoxin 1 from bacillus cereus2 (1.32 a resolution)
70c3r6uA_
not modelled 29.0 16
PDB header:transport protein
Chain: A: PDB Molecule:choline-binding protein;
PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
71c3hr4C_
not modelled 26.8 14
PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
72c3hlyA_
not modelled 26.3 17
PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from synechococcus sp2 q5mzp6_synp6 protein. northeast structural genomics consortium target3 snr135d.
73d1ycga1
not modelled 25.2 8
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
74c3gxaA_
not modelled 24.4 20
PDB header:protein binding
Chain: A: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of gna1946
75c3ir1F_
not modelled 23.9 20
PDB header:protein binding
Chain: F: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of lipoprotein gna1946 from neisseria meningitidis
76c4q5tA_
not modelled 23.0 17
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of an atmb (putative membrane lipoprotein) from2 streptococcus mutans ua159 at 1.91 a resolution
77c4oteA_
not modelled 22.6 21
PDB header:protein transport
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of a putative lipoprotein (cd630_1653) from2 clostridium difficile 630 at 2.20 a resolution
78d1qcrd2
not modelled 21.2 29
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
79d1g7da_
not modelled 21.2 13
Fold:ERP29 C domain-like
Superfamily:ERP29 C domain-like
Family:ERP29 C domain-like
80d1ja1a2
not modelled 20.2 9
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
81c2hnbA_
not modelled 20.1 14
PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
82c4kysA_
not modelled 20.1 8
PDB header:transferase
Chain: A: PDB Molecule:thiamine pyridinylase i;
PDBTitle: clostridium botulinum thiaminase i in complex with thiamin
83d1sw5a_
not modelled 19.8 17
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
84c5iiaH_
not modelled 19.6 21
PDB header:cell adhesion
Chain: H: PDB Molecule:vitelline envelope sperm lysin receptor;
PDBTitle: crystal structure of red abalone egg verl repeat 3 in complex with2 sperm lysin at 1.7 a resolution (crystal form i)
85c5a4jC_
not modelled 18.9 31
PDB header:ligase
Chain: C: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of fthfs1 from t.acetoxydans re1
86c3do6B_
not modelled 18.4 19
PDB header:ligase
Chain: B: PDB Molecule:formate--tetrahydrofolate ligase;
PDBTitle: crystal structure of putative formyltetrahydrofolate synthetase2 (tm1766) from thermotoga maritima at 1.85 a resolution
87d1b1ca_
not modelled 17.2 12
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
88d2vv5a2
not modelled 17.2 21
Fold:Ferredoxin-like
Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain
Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
89c4n82B_
not modelled 17.1 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleotide reductase;
PDBTitle: x-ray crystal structure of streptococcus sanguinis nrdiox
90d1ydga_
not modelled 16.0 23
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
91c4ne4A_
not modelled 15.9 17
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein
PDBTitle: crystal structure of abc transporter substrate binding protein prox2 from agrobacterium tumefaciens cocrystalized with btb
92c6onpA_
not modelled 15.8 14
PDB header:unknown function
Chain: A: PDB Molecule:periplasmic binding protein xoxj;
PDBTitle: crystal structure of periplasmic binding protein xoxj from2 methylobacterium extorquens am1
93c6j7aB_
not modelled 15.2 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:heme oxygenase 1,nadph--cytochrome p450 reductase;
PDBTitle: fusion protein of heme oxygenase-1 and nadph cytochrome p450 reductase2 (17aa)
94c1bvyF_
not modelled 14.6 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
95d1bvyf_
not modelled 14.6 21
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
96c5widB_
not modelled 14.6 11
PDB header:flavoprotein
Chain: B: PDB Molecule:flavodoxin;
PDBTitle: structure of a flavodoxin from the domain archaea
97d2f06a2
not modelled 14.6 37
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:BT0572-like
98d1vmea1
not modelled 14.4 10
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
99c6detA_
not modelled 14.4 10
PDB header:transport protein
Chain: A: PDB Molecule:tv2483;
PDBTitle: the crystal structure of tv2483 bound to l-arginine

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below