Phyre 2 Results for RVBD2591_(PE_PGRS44)_2921561

Email	mdejesus@rockefeller.edu
Description	RVBD2591_(PE_PGRS44)_2921561_2923192
Date	Wed Aug 7 12:50:23 BST 2019
Unique Job ID	0885234c03931770
Sequence	MSFVTAAPEM ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:40.590 Y:35.740 Z:53.071

Model (left) based on template c5xfsA_

Top template information

PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Confidence and coverage

Confidence:

100.0%

Coverage:

14%

78 residues ( 14% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

Warning: 81% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M S F V T A A P E M L A T A A Q N V A N I G T S L S A A N A T A A A S T T S V L A A G A D E V S Q A I A R L F S D Y A T

Secondary structure

SS confidence

Disorder ? ? ? ?
? ?
? ? ? ? ?
? ? ? ?
?
?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence H Y Q S L N A Q A A A F H H S F V Q T L N A A G G A Y S S A E A A N A S A Q A L E Q N L L A V I N A P A Q A L F G R P L

Secondary structure

SS confidence

Disorder
? ?
? ? ? ? ? ? ? ? ? ? ?
? ? ?
? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence I G N G A N G T A A S P N G G D G G I L Y G N G G N G F S Q T T A G V A G G A G G S A G L I G N G G N G G A G G A G A A

Secondary structure

SS confidence

Disorder
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence G G A G G A G G W L L G N G G A G G P G G P T D V P A G T G G A G G A G G D A P L I G W G G N G G P G G F A A F G N G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence A G G N G G A S G S L F G V G G A G G V G G S S E D V G G T G G A G G A G R G L F L G L G G D G G A G G T S N N N G G D

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence G G A G G T A G G R L F S L G G D G G N G G A G T A I G S N A G D G G A G G D S S A L I G Y A Q G G S G G L G G F G E S

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence T G G D G G L G G A G A V L I G T G V G G F G G L G G G S N G T G G A G G A G G T G A T L I G L G A G G G G G I G G F A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence V N V G N G V G G L G G Q G G Q G A A L I G L G A G G A G G A G G A T V V G L G G N G G D G G D G G G L F S I G V G G D

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540

Sequence G G N A G N G A M P A N G G N G G N A G V I A N G S F A P S F V G F G G N G G N G V N G G T G G S G G I L F G A N G A N

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ?
?
? ? ? ? ?

Disorder confidence

. . .

Sequence G P S

Secondary structure

SS confidence

Disorder ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 81%)

Alpha helix ( 19%)

Beta strand ( 1%)

Domain analysis [Show]

Rank Aligned region

PDB 5xfs chain A

3D model

Region: 7 - 84
Aligned: 78
Modelled: 78
Confidence: 100.0%
Identity: 45%
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Phyre2

PDB 2g38 chain A domain 1

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 100.0%
Identity: 32%
Fold: Ferritin-like
Superfamily: PE/PPE dimer-like
Family: PE

Phyre2

PDB 2g38 chain A

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 100.0%
Identity: 32%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis

Phyre2

PDB 3hqv chain B

3D model

Region: 153 - 531
Aligned: 377
Modelled: 379
Confidence: 78.5%
Identity: 24%
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Phyre2

PDB 5ctd chain B

3D model

Region: 463 - 502
Aligned: 40
Modelled: 40
Confidence: 20.0%
Identity: 28%
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 5ctd chain A

3D model

Region: 463 - 502
Aligned: 40
Modelled: 40
Confidence: 17.3%
Identity: 28%
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen

Phyre2

PDB 5cti chain C

3D model

Region: 463 - 502
Aligned: 40
Modelled: 40
Confidence: 15.2%
Identity: 25%
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen (native form)

Phyre2

1
c5xfsA_

2
d2g38a1

3
c2g38A_

4
c3hqvB_

5
c5ctdB_

6
c5ctdA_

7
c5ctiC_