Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2595_(-)_2925502_2925747
DateWed Aug 7 12:50:23 BST 2019
Unique Job ID395396f4dfc20b1e
SequenceMRTTIDVAGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.318 Y:25.601 Z:46.031
Model (left) based on template c2w1tB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
Confidence and coverage
Confidence: 98.7% Coverage: 63%
51 residues ( 63% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2w1tB_



98.7 33
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
2d1yfba1



98.4 38
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
3c2l66B_



98.3 15
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, abrb family;
PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
4d2fy9a1



98.3 26
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
5c2ro5B_



98.0 41
PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: rdc-refined solution structure of the n-terminal dna recognition2 domain of the bacillus subtilis transition-state regulator spovt
6c2mrnB_



98.0 28
PDB header:dna binding protein
Chain: B: PDB Molecule:antitoxin maze;
PDBTitle: structure of truncated ecmaze
7c2glwA_



97.6 21
PDB header:transcription
Chain: A: PDB Molecule:92aa long hypothetical protein;
PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
8d1ub4c_



97.5 27
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
9d1mvfd_



97.3 36
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
10c1n0fF_



93.8 23
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
11d1n0ea_



92.9 23
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
12c3o27B_



91.7 36
PDB header:dna binding protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
13d2vbua1



86.5 24
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:CTP-dependent riboflavin kinase-like
14c3zvkG_



79.5 23
PDB header:antitoxin/toxin/dna
Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
15d2d9ra1



78.8 29
Fold:Double-split beta-barrel
Superfamily:AF2212/PG0164-like
Family:PG0164-like
16c5l6lD_



71.8 19
PDB header:hydrolase
Chain: D: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 bound to operator dna
17c5udfB_



71.4 25
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lole;
PDBTitle: structure of the n-terminal domain of lipoprotein-releasing system2 transmembrane protein lole from acinetobacter baumannii
18c2pjhB_



69.4 19
PDB header:transport protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: strctural model of the p97 n domain- npl4 ubd complex
19d1ylea1



68.7 13
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:AstA-like
20c1cz5A_



66.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
21c1zc1A_



not modelled 65.9 26
PDB header:protein turnover
Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1;
PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
22d1cz5a1



not modelled 64.8 28
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
23c2c45F_



not modelled 64.3 18
PDB header:lyase
Chain: F: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: native precursor of pyruvoyl dependent aspartate decarboxylase
24c1pt1B_



not modelled 61.4 15
PDB header:lyase
Chain: B: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine
25d1ppya_



not modelled 61.0 15
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Pyruvoyl dependent aspartate decarboxylase, ADC
26c6nklD_



not modelled 60.2 23
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
27c2yujA_



not modelled 52.2 18
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like;
PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1
28c2oqkA_



not modelled 47.4 19
PDB header:translation
Chain: A: PDB Molecule:putative translation initiation factor eif-1a;
PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a
29c4bpp0_



not modelled 40.7 19
PDB header:ribosome
Chain: 0: PDB Molecule:translation initiation factor eif-1a family protein;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 4
30c1uheA_



not modelled 39.3 19
PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain;
PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex
31d2jioa1



not modelled 39.3 22
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
32d1d7qa_



not modelled 38.7 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
33d1g8ka1



not modelled 36.9 19
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
34c5naaB_



not modelled 36.5 13
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lolc;
PDBTitle: lipoprotein-releasing system transmembrane protein lolc
35c2k4vA_



not modelled 35.2 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pa1076;
PDBTitle: solution structure of uncharacterized protein pa1076 from pseudomonas2 aeruginosa. northeast structural genomics consortium (nesg) target3 pat3, ontario center for structural proteomics target pa1076 .
36c1h9mB_



not modelled 34.3 14
PDB header:binding protein
Chain: B: PDB Molecule:molybdenum-binding-protein;
PDBTitle: two crystal structures of the cytoplasmic molybdate-binding protein2 modg suggest a novel cooperative binding mechanism and provide3 insights into ligand-binding specificity. peg-grown form with4 molybdate bound
37c3plxB_



not modelled 34.3 13
PDB header:lyase
Chain: B: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168
38c3ougA_



not modelled 34.2 16
PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis
39c1vc3B_



not modelled 33.4 13
PDB header:lyase
Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain;
PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase
40c3pjyB_



not modelled 31.8 29
PDB header:transcription regulator
Chain: B: PDB Molecule:hypothetical signal peptide protein;
PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution
41c3m7aA_



not modelled 31.7 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of saro_0823 (yp_496102.1) a protein of unknown2 function from novosphingobium aromaticivorans dsm 12444 at 1.22 a3 resolution
42c4zsiA_



not modelled 30.7 18
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor dasr;
PDBTitle: crystal structure of the effector-binding domain of dasr (dasr-ebd) in2 complex with glucosamine-6-phosphate
43c3j81i_



not modelled 30.4 13
PDB header:ribosome
Chain: I: PDB Molecule:es8;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex
44d1h9ma1



not modelled 30.4 14
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
45d1jt8a_



not modelled 28.6 28
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
46c5lxyH_



not modelled 28.5 25
PDB header:rna binding protein
Chain: H: PDB Molecule:zinc finger cchc domain-containing protein 8;
PDBTitle: structure of the minimal rbm7 - zcchc8 complex
47d1hr0w_



not modelled 28.0 30
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
48d2iv2x1



not modelled 27.8 26
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
49c5l6mA_



not modelled 27.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
50d1qvpa_



not modelled 27.7 38
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
51d1h0ha1



not modelled 27.7 13
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
52d1h9ra1



not modelled 27.2 21
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
53c2kl0A_



not modelled 27.1 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
54d3dl3a1



not modelled 27.0 10
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:TehB-like
55d2eifa2



not modelled 27.0 40
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
56d1vpka1



not modelled 26.9 18
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase III, beta subunit
57c4trtB_



not modelled 25.7 13
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii subunit beta;
PDBTitle: deinococcus radiodurans dna polymerase iii subunit beta
58c1uebB_



not modelled 25.6 18
PDB header:rna binding protein
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of translation elongation factor p from2 thermus thermophilus hb8
59c1zeqX_



not modelled 25.4 10
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
60d1ogya1



not modelled 24.9 19
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
61d1h9ma2



not modelled 24.8 14
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
62d2fa1a1



not modelled 24.2 9
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
63d1kqfa1



not modelled 23.9 19
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
64c2ra5A_



not modelled 23.9 24
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator2 from streptomyces coelicolor
65d2ra5a1



not modelled 23.9 24
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
66c3ll7A_



not modelled 23.9 10
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase pg_1098 from2 porphyromonas gingivalis w83
67c6c00A_



not modelled 22.4 28
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: solution structure of translation initiation factor 1 from clostridium2 difficile
68c3nnqA_



not modelled 22.3 29
PDB header:viral protein
Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus
PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3
69d1zq1a1



not modelled 21.7 15
Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
70c4ql5A_



not modelled 20.8 28
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: crystal structure of translation initiation factor if-1 from2 streptococcus pneumoniae tigr4
71d1vlfm1



not modelled 20.1 13
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
72d2pkha1



not modelled 20.1 12
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
73c5ccbA_



not modelled 19.9 21
PDB header:transferase/rna
Chain: A: PDB Molecule:trna (adenine(58)-n(1))-methyltransferase catalytic subunit
PDBTitle: crystal structure of human m1a58 methyltransferase in a complex with2 trna3lys and sah
74d2zjda1



not modelled 19.8 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:GABARAP-like
75c5t5iL_



not modelled 19.6 16
PDB header:oxidoreductase
Chain: L: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdd;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
76c3tndF_



not modelled 19.6 23
PDB header:translation, toxin
Chain: F: PDB Molecule:antitoxin vapb;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
77c1ybyB_



not modelled 19.6 20
PDB header:translation
Chain: B: PDB Molecule:translation elongation factor p;
PDBTitle: conserved hypothetical protein cth-95 from clostridium thermocellum
78c3i4oA_



not modelled 19.5 28
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis
79c5ly5A_



not modelled 19.4 32
PDB header:unknown function
Chain: A: PDB Molecule:arcadin-1;
PDBTitle: arcadin-1 from pyrobaculum calidifontis
80c3mhxB_



not modelled 19.2 13
PDB header:metal transport
Chain: B: PDB Molecule:putative ferrous iron transport protein a;
PDBTitle: crystal structure of stenotrophomonas maltophilia feoa complexed with2 zinc: a unique procaryotic sh3 domain protein possibly acting as a3 bacterial ferrous iron transport activating factor
81d2p19a1



not modelled 19.2 27
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
82c1qw1A_



not modelled 19.0 28
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226
83c2ki8A_



not modelled 18.8 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase,
PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7
84d1fr3a_



not modelled 18.7 21
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
85d3bwga2



not modelled 18.6 9
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
86d3cnva1



not modelled 18.5 30
Fold:Chorismate lyase-like
Superfamily:Chorismate lyase-like
Family:UTRA domain
87d1tmoa1



not modelled 18.5 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
88d3d31a1



not modelled 18.4 16
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
89d1eu1a1



not modelled 18.0 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
90c4esnB_



not modelled 17.7 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1312 family protein (rumgna_02503) from2 ruminococcus gnavus atcc 29149 at 2.20 a resolution
91d1guta_



not modelled 17.2 17
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
92c4mnoA_



not modelled 17.1 28
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 1a;
PDBTitle: crystal structure of aif1a from pyrococcus abyssi
93d1e32a1



not modelled 17.0 19
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
94c4cjdA_



not modelled 16.8 16
PDB header:cell adhesion
Chain: A: PDB Molecule:nada;
PDBTitle: crystal structure of neisseria meningitidis trimeric2 autotransporter and vaccine antigen nada
95d1dmra1



not modelled 16.5 16
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
96c3wwvA_



not modelled 16.0 4
PDB header:unknown function
Chain: A: PDB Molecule:stomatin operon partner protein;
PDBTitle: c-terminal domain of stomatin operon partner protein 1510-c from2 pyrococcus horikoshii
97d1zud21



not modelled 15.7 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
98c5azhA_



not modelled 15.5 16
PDB header:protein binding
Chain: A: PDB Molecule:eeeweel peptide,protein lgg-2;
PDBTitle: crystal structure of lgg-2 fused with an eeeweel peptide
99c3treA_



not modelled 15.1 13
PDB header:translation
Chain: A: PDB Molecule:elongation factor p;
PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii

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