Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2596_(-)_2925744_2926148
DateWed Aug 7 12:50:23 BST 2019
Unique Job ID3c1161247076144d
SequenceVIAPDTSVLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.670 Y:49.965 Z:37.967
Model (left) based on template c5l6mC_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
Confidence and coverage
Confidence: 99.9% Coverage: 93%
125 residues ( 93% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5l6mC_



99.9 16
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
2c3tndC_



99.9 14
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
3c6nklA_



99.9 11
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
4d2h1ca1



99.9 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
5c3zvkC_



99.9 12
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
6c5x3tD_



99.8 14
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
7c5wzfB_



99.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
8d1v96a1



99.8 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
9c4xgrG_



99.8 15
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
10c3dboB_



99.8 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
11c3h87B_



99.7 16
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
12c6a7vG_



99.7 21
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
13d2fe1a1



99.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
14c2fe1A_



99.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
15d1y82a1



99.7 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c4chgC_



99.7 17
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
17c5sv2A_



99.6 9
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
18d1v8pa_



99.5 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c1v8pK_



99.5 20
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
20d1w8ia_



99.2 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c3i8oA_



not modelled 98.7 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22c3ix7A_



not modelled 98.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
23d1o4wa_



not modelled 98.3 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c5ywwA_



not modelled 98.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25c5f4hF_



not modelled 97.9 12
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c2lcqA_



not modelled 97.6 14
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 97.5 16
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5jpqd_



not modelled 96.4 18
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 95.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c2hwyB_



not modelled 88.9 14
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c4mj7B_



not modelled 85.6 10
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
32c2mdtA_



not modelled 76.5 20
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
33c6g5iy_



not modelled 71.6 16
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
34c3v33A_



not modelled 58.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35c3v32B_



not modelled 56.4 12
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
36c2kebA_



not modelled 42.6 11
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
37c4e2i3_



not modelled 36.2 11
PDB header:hydrolase/dna binding protein
Chain: 3: PDB Molecule:dna polymerase alpha subunit b;
PDBTitle: the complex structure of the sv40 helicase large t antigen and p682 subunit of dna polymerase alpha-primase
38d2bz1a1



not modelled 17.5 18
Fold:RibA-like
Superfamily:RibA-like
Family:RibA-like
39d1rhya1



not modelled 9.3 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
40c1jqsB_



not modelled 7.6 19
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
41c4g25A_



not modelled 7.6 26
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
42d2czca2



not modelled 5.8 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
43d2ae8a1



not modelled 5.8 19
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
44d2f1da1



not modelled 5.5 14
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase

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