Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2597_(-)_2926365_2926985
DateWed Aug 7 12:50:23 BST 2019
Unique Job ID64a5413c2b5b3342
SequenceVGNLLVVIAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.141 Y:33.990 Z:30.578
Model (left) based on template d2cp6a1
Top template information
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
Confidence and coverage
Confidence: 84.7% Coverage: 34%
70 residues ( 34% of your sequence) have been modelled with 84.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2cp6a1
84.7 24
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
2d2cowa1
80.9 26
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
3d1whka_
66.0 11
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
4c4b6mA_
64.2 20
PDB header:structural protein
Chain: A: PDB Molecule:tubulin-specific chaperone, putative;
PDBTitle: trypansoma brucei tubulin binding cofactor b cap-gly domain
5d1whja_
60.4 13
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
6d2cp5a1
58.8 16
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
7d2coza1
58.7 20
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
8d2hqha1
58.0 24
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
9d2coya1
56.4 24
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
10d1ed7a_
56.3 25
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
11c2e4hA_
54.0 23
PDB header:structural protein
Chain: A: PDB Molecule:restin;
PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail
12d2cp0a1
53.6 20
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
13d2cp2a1
51.2 24
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
14c2z0wA_
50.7 16
PDB header:protein binding
Chain: A: PDB Molecule:cap-gly domain-containing linker protein 4;
PDBTitle: crystal structure of the 2nd cap-gly domain in human restin-2 like protein 2 reveals a swapped-dimer
15d2f9ha1
48.8 24
Fold:PTSIIA/GutA-like
Superfamily:PTSIIA/GutA-like
Family:PTSIIA/GutA-like
16c4h87A_
47.2 24
PDB header:peptide binding protein
Chain: A: PDB Molecule:kanadaptin;
PDBTitle: crystal structure of a fha domain of kanadaptin (slc4a1ap) from homo2 sapiens at 1.55 a resolution
17d2e3ha1
47.2 22
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
18d1p9ka_
46.9 26
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
19d2cp3a1
43.7 21
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
20d2e3ia1
42.3 21
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
21d1ixda_
not modelled 41.4 16
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
22d1c0ma2
not modelled 41.1 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
23d1tova_
not modelled 37.2 18
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
24c3cwzB_
not modelled 35.3 14
PDB header:transport protein
Chain: B: PDB Molecule:rab6-interacting protein 1;
PDBTitle: structure of rab6(gtp)-r6ip1 complex
25d1whha_
not modelled 26.3 15
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
26c2nv4A_
not modelled 25.3 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0066 protein af_0241;
PDBTitle: crystal structure of upf0066 protein af0241 in complex with2 s-adenosylmethionine. northeast structural genomics3 consortium target gr27
27d2f4ma1
not modelled 23.8 19
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
28c3e0eA_
not modelled 23.7 22
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
29c3okxA_
not modelled 22.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yaeb-like protein rpa0152;
PDBTitle: crystal structure of yaeb-like protein from rhodopseudomonas palustris
30c2ls01_
not modelled 22.0 16
PDB header:hydrolase
Chain: 1: PDB Molecule:zoocin a endopeptidase;
PDB Fragment:unp residues 170-285; PDBTitle: solution structure of the target recognition domain of zoocin a
31d2affa1
not modelled 20.5 14
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
32c5dniB_
not modelled 20.4 37
PDB header:lyase
Chain: B: PDB Molecule:putative l(+)-tartrate dehydratase subunit beta;
PDBTitle: crystal structure of methanocaldococcus jannaschii fumarate hydratase2 beta subunit
33d1cz5a1
not modelled 20.3 18
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
34c3a5zF_
not modelled 20.1 24
PDB header:ligase
Chain: F: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
35c2mkvA_
not modelled 20.1 15
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
36d2vv5a1
not modelled 19.5 32
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Mechanosensitive channel protein MscS (YggB), middle domain
37d1k0ha_
not modelled 19.2 25
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:gpFII-like
38c6fc6A_
not modelled 18.8 14
PDB header:cell cycle
Chain: A: PDB Molecule:nuclear fusion protein bik1;
PDBTitle: bik1 cap-gly domain with etf peptide from bim1
39d1x3za1
not modelled 18.5 19
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
40c4a0eB_
not modelled 18.4 14
PDB header:transport protein
Chain: B: PDB Molecule:type iii secretion protein;
PDBTitle: crystal structure of the cytoplasmic n-terminal domain of yersinia2 pestis yscd
41c3dm3A_
not modelled 18.2 20
PDB header:replication
Chain: A: PDB Molecule:replication factor a;
PDBTitle: crystal structure of a domain of a replication factor a2 protein, from methanocaldococcus jannaschii. northeast3 structural genomics target mjr118e
42d2icha1
not modelled 17.8 25
Fold:AttH-like
Superfamily:AttH-like
Family:AttH-like
43d2isba1
not modelled 16.7 26
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:FumA C-terminal domain-like
Family:FumA C-terminal domain-like
44d1vyva1
not modelled 15.5 11
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
45c1r21A_
not modelled 15.5 14
PDB header:cell cycle
Chain: A: PDB Molecule:antigen ki-67;
PDBTitle: solution structure of human ki67 fha domain
46c2wkdA_
not modelled 15.1 18
PDB header:dna binding protein
Chain: A: PDB Molecule:orf34p2;
PDBTitle: crystal structure of a double ile-to-met mutant of protein orf34 from2 lactococcus phage p2
47d1eika_
not modelled 14.1 25
Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
48c3ounA_
not modelled 13.8 30
PDB header:protein binding/transferase
Chain: A: PDB Molecule:putative uncharacterized protein tb39.8;
PDBTitle: crystal structure of the fhaa fha domain complexed with the2 intracellular domain of rv3910
49d1rl2a2
not modelled 13.7 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
50d2qamc2
not modelled 13.5 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
51c3poaA_
not modelled 13.5 30
PDB header:peptide binding protein
Chain: A: PDB Molecule:putative uncharacterized protein tb39.8;
PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions
52d1vioa2
not modelled 13.2 7
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Pseudouridine synthase RsuA N-terminal domain
53d2zjra2
not modelled 13.1 42
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
54c6msoD_
not modelled 12.3 21
PDB header:lyase/lyase inhibitor
Chain: D: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of mitochondrial fumarate hydratase from leishmania2 major in a complex with inhibitor thiomalate
55c4owtB_
not modelled 12.3 23
PDB header:dna binding protein
Chain: B: PDB Molecule:soss complex subunit b1;
PDBTitle: structural basis of soss1 complex assembly
56d1goia1
not modelled 12.2 42
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
57c3mk7F_
not modelled 11.7 6
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
58c3eswA_
not modelled 11.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
59d2cqaa1
not modelled 11.4 8
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
60c2q5xA_
not modelled 11.3 40
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup98;
PDBTitle: crystal structure of the c-terminal domain of hnup98
61c6cahA_
not modelled 11.2 29
PDB header:protein binding
Chain: A: PDB Molecule:abc transporter atp-binding/permease protein rv1747;
PDBTitle: nmr-based structure of the fha-2 domain from mycobacterium2 tuberculosis abc transporter rv1747
62d2piaa1
not modelled 11.1 15
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
63d2ff4a3
not modelled 11.1 10
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
64c1vw4M_
not modelled 10.8 20
PDB header:ribosome
Chain: M: PDB Molecule:54s ribosomal protein img1, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
65c5vgzF_
not modelled 10.6 21
PDB header:hydrolase
Chain: F: PDB Molecule:26s proteasome regulatory subunit 6a;
PDBTitle: conformational landscape of the p28-bound human proteasome regulatory2 particle
66c1mhsA_
not modelled 10.6 17
PDB header:membrane protein, proton transport
Chain: A: PDB Molecule:plasma membrane atpase;
PDBTitle: model of neurospora crassa proton atpase
67d1tvca1
not modelled 10.6 23
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
68c2mk5A_
not modelled 10.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:endolysin;
PDBTitle: solution structure of a protein domain
69c4djiA_
not modelled 10.3 19
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
70c1jb7A_
not modelled 10.2 11
PDB header:dna-binding protein/dna
Chain: A: PDB Molecule:telomere-binding protein alpha subunit;
PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex
71c1ph4A_
not modelled 10.2 11
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:telomere-binding protein alpha subunit;
PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg
72c2jp3A_
not modelled 10.2 19
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
73c4in3C_
not modelled 9.9 25
PDB header:protein transport
Chain: C: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-bch1 exomer cargo adaptor complex
74d1s04a_
not modelled 9.9 42
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ProFAR isomerase associated domain
75c2d49A_
not modelled 9.8 38
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase c;
PDBTitle: solution structure of the chitin-binding domain of2 streptomyces griseus chitinase c
76c3cyyA_
not modelled 9.8 14
PDB header:peptide binding protein
Chain: A: PDB Molecule:tight junction protein zo-1;
PDBTitle: the crystal structure of zo-1 pdz2 in complex with the cx43 peptide
77d1krha1
not modelled 9.8 31
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
78c4qiwH_
not modelled 9.7 13
PDB header:transcription
Chain: H: PDB Molecule:dna-directed rna polymerase subunit h;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
79c3ij3A_
not modelled 9.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:cytosol aminopeptidase;
PDBTitle: 1.8 angstrom resolution crystal structure of cytosol aminopeptidase2 from coxiella burnetii
80c5vgzC_
not modelled 9.6 13
PDB header:hydrolase
Chain: C: PDB Molecule:26s proteasome regulatory subunit 8;
PDBTitle: conformational landscape of the p28-bound human proteasome regulatory2 particle
81c1z9zA_
not modelled 9.6 19
PDB header:structural protein
Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1;
PDBTitle: crystal structure of yeast sla1 sh3 domain 3
82d2bmwa1
not modelled 9.6 36
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
83c3kf8D_
not modelled 9.5 27
PDB header:structural protein
Chain: D: PDB Molecule:protein ten1;
PDBTitle: crystal structure of c. tropicalis stn1-ten1 complex
84c3gqsB_
not modelled 9.5 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:adenylate cyclase-like protein;
PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis
85c5ounA_
not modelled 9.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:ruvb-like protein 2;
PDBTitle: nmr solution structure of the external dii domain of rvb2 from2 saccharomyces cerevisiae
86d1hmja_
not modelled 8.9 20
Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
87c3ebrA_
not modelled 8.8 20
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized rmlc-like cupin;
PDBTitle: crystal structure of an rmlc-like cupin protein (reut_a0381) from2 ralstonia eutropha jmp134 at 2.60 a resolution
88c2q1dX_
not modelled 8.7 19
PDB header:lyase
Chain: X: PDB Molecule:2-keto-3-deoxy-d-arabinonate dehydratase;
PDBTitle: 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and2 2,5-dioxopentanoate
89d1gvha2
not modelled 8.6 15
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
90d2d6fa1
not modelled 8.6 24
Fold:Sm-like fold
Superfamily:GatD N-terminal domain-like
Family:GatD N-terminal domain-like
91c5wxkB_
not modelled 8.6 22
PDB header:transferase
Chain: B: PDB Molecule:elongation factor p;
PDBTitle: earp bound with domain i of ef-p
92c3kzwD_
not modelled 8.5 7
PDB header:hydrolase
Chain: D: PDB Molecule:cytosol aminopeptidase;
PDBTitle: crystal structure of cytosol aminopeptidase from staphylococcus aureus2 col
93d1cqxa2
not modelled 8.5 15
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
94c5l2rA_
not modelled 8.4 32
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of fumarate hydratase from leishmania major
95c3j20R_
not modelled 8.4 21
PDB header:ribosome
Chain: R: PDB Molecule:30s ribosomal protein s17p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
96c4hw9E_
not modelled 8.4 21
PDB header:membrane protein
Chain: E: PDB Molecule:mechanosensitive channel mscs;
PDBTitle: crystal structure of helicobacter pylori mscs (closed state)
97c3h8gC_
not modelled 8.1 27
PDB header:hydrolase
Chain: C: PDB Molecule:cytosol aminopeptidase;
PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida
98c4nz3A_
not modelled 8.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:deacetylase da1;
PDBTitle: structure of vibrio cholerae chitin de-n-acetylase in complex with2 di(n-acetyl-d-glucosamine) (cbs) in p 21 21 21
99c6a8wA_
not modelled 8.0 29
PDB header:protein binding
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 64;
PDBTitle: crystal structure of the fha domain of far9

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below