Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2599_(-)_2927487_2927918
DateWed Aug 7 12:50:24 BST 2019
Unique Job ID271adefbd37b61e5
SequenceMSRNRLFLVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.991 Y:35.258 Z:29.581
Model (left) based on template d1veha_
Top template information
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
Confidence and coverage
Confidence: 45.8% Coverage: 28%
40 residues ( 28% of your sequence) have been modelled with 45.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1veha_



45.8 20
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
2c3fhkF_



43.8 31
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide isomerase
3d1th5a1



43.0 22
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
4c2jnvA_



35.9 21
PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 1, chloroplast;
PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa
5c6f0kA_



29.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
6d3bmva3



27.4 18
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
7d1pama3



27.0 18
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
8d1cyga3



23.8 15
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
9c5vhxE_



23.7 21
PDB header:transport protein
Chain: E: PDB Molecule:glutamate receptor 2,germ cell-specific gene 1-like
PDBTitle: glua2-1xgsg1l bound to zk
10d1qhoa3



22.2 18
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
11d1xhja_



18.7 13
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
12c6f46A_



18.7 26
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 1;
PDBTitle: structure of the transmembrane helix of bclxl in phospholipid2 nanodiscs
13d1cxla3



18.5 15
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
14c5mrwG_



17.4 27
PDB header:hydrolase
Chain: G: PDB Molecule:potassium-transporting atpase kdpc subunit;
PDBTitle: structure of the kdpfabc complex
15c2z51A_



16.4 19
PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 2, chloroplast;
PDBTitle: crystal structure of arabidopsis cnfu involved in iron-sulfur cluster2 biosynthesis
16c5ir6C_



16.0 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
17d1cgta3



15.8 15
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
18c4xydB_



14.8 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:norc-like protein;
PDBTitle: nitric oxide reductase from roseobacter denitrificans (rdnor)
19c4akaA_



14.2 34
PDB header:immune system
Chain: A: PDB Molecule:il-4-inducing protein;
PDBTitle: ipse alpha-1, an ige-binding crystallin
20c1ifpA_



14.0 46
PDB header:virus
Chain: A: PDB Molecule:major coat protein assembly;
PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly
21c5doqC_



not modelled 14.0 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
22c2jp3A_



not modelled 13.5 28
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
23d1qm4a1



not modelled 13.4 20
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
24c5hhlA_



not modelled 13.3 13
PDB header:rna binding protein
Chain: A: PDB Molecule:retron-type reverse transcriptase;
PDBTitle: reverse transcriptase domain of group ii intron maturase from2 eubacterium rectale in p21 space group
25d1mxaa1



not modelled 12.9 28
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
26c2zxeG_



not modelled 12.7 32
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
27d2p02a1



not modelled 12.3 20
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
28c3o0rC_



not modelled 12.1 14
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
29c2jo1A_



not modelled 11.9 22
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
30d1qhxa_



not modelled 11.6 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Chloramphenicol phosphotransferase
31d3pmga3



not modelled 11.4 13
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
32c6qt9Y_



not modelled 11.3 22
PDB header:virus
Chain: Y: PDB Molecule:orf 31;
PDBTitle: cryo-em structure of sh1 full particle.
33c3pesA_



not modelled 11.2 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein gp49;
PDBTitle: crystal structure of uncharacterized protein from pseudomonas phage2 yua
34c2e76D_



not modelled 11.1 13
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
35d2etna2



not modelled 10.6 13
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
36c2r9qD_



not modelled 9.9 16
PDB header:hydrolase
Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase;
PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens
37c2eqjA_



not modelled 9.8 19
PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
38c2mkvA_



not modelled 9.3 16
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
39c2mc7A_



not modelled 8.9 17
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
40c3fhoB_



not modelled 8.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent rna helicase dbp5;
PDBTitle: structure of s. pombe dbp5
41d1jmxa1



not modelled 7.7 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
42d1y4oa1



not modelled 7.3 35
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
43c2hxyC_



not modelled 6.3 17
PDB header:hydrolase
Chain: C: PDB Molecule:probable atp-dependent rna helicase ddx48;
PDBTitle: crystal structure of human apo-eif4aiii
44c3iwdC_



not modelled 6.3 19
PDB header:lyase
Chain: C: PDB Molecule:s-adenosylmethionine decarboxylase;
PDBTitle: t. maritima adometdc complex with 5'-deoxy-5'-dimethyl thioadenosine
45c5ivlA_



not modelled 6.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:dead-box atp-dependent rna helicase csha;
PDBTitle: csha helicase
46d1grja2



not modelled 6.1 22
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
47d1tqza1



not modelled 5.8 41
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Necap1 N-terminal domain-like
48d1pbya1



not modelled 5.8 9
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
49c2v9kA_



not modelled 5.7 27
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein flj32312;
PDBTitle: crystal structure of human pus10, a novel pseudouridine2 synthase.
50c4ct4B_



not modelled 5.6 19
PDB header:rna binding protein
Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx6;
PDBTitle: cnot1 mif4g domain - ddx6 complex
51c6ohkA_



not modelled 5.5 11
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: crystal structure of fusobacterium nucleatum flavodoxin mutant k13g2 bound to flavin mononucleotide
52c1s2mA_



not modelled 5.5 19
PDB header:rna binding protein
Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1;
PDBTitle: crystal structure of the dead box protein dhh1p
53c1xtkA_



not modelled 5.4 6
PDB header:gene regulation
Chain: A: PDB Molecule:probable atp-dependent rna helicase p47;
PDBTitle: structure of decd to dead mutation of human uap56
54d2f23a2



not modelled 5.2 14
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain

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Transmembrane helix prediction 

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