Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2600_(-)_2928000_2928401
DateWed Aug 7 12:50:24 BST 2019
Unique Job ID457e60641ce7a8e7
SequenceVVATVLYFLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.651 Y:15.260 Z:22.528
Model (left) based on template c4mkqA_
Top template information
PDB header:toxin
Chain: A: PDB Molecule:monalysin;
PDBTitle: crystal structure of the pore-forming toxin monalysin mutant deleted2 of the membrane-spanning domain
Confidence and coverage
Confidence: 35.4% Coverage: 11%
15 residues ( 11% of your sequence) have been modelled with 35.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4mkqA_



35.4 7
PDB header:toxin
Chain: A: PDB Molecule:monalysin;
PDBTitle: crystal structure of the pore-forming toxin monalysin mutant deleted2 of the membrane-spanning domain
2c4mnoA_



25.4 54
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 1a;
PDBTitle: crystal structure of aif1a from pyrococcus abyssi
3c1yceD_



20.9 31
PDB header:membrane protein
Chain: D: PDB Molecule:subunit c;
PDBTitle: structure of the rotor ring of f-type na+-atpase from ilyobacter2 tartaricus
4c2oqkA_



18.6 21
PDB header:translation
Chain: A: PDB Molecule:putative translation initiation factor eif-1a;
PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a
5c1vw48_



17.8 17
PDB header:ribosome
Chain: 8: PDB Molecule:54s ribosomal protein l13, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
6c5e06A_



16.9 33
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: structure of sin nombre virus nucleoprotein in long-axis crystal form
7c2dgyA_



16.0 31
PDB header:translation
Chain: A: PDB Molecule:mgc11102 protein;
PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein
8d1jt8a_



14.2 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
9c5dn6P_



13.7 27
PDB header:hydrolase
Chain: P: PDB Molecule:atp synthase f0 subcomplex c subunit;
PDBTitle: atp synthase from paracoccus denitrificans
10c4mjtH_



13.1 7
PDB header:toxin
Chain: H: PDB Molecule:monalysin;
PDBTitle: crystal structure of the oligomeric pore-forming toxin pro-monalysin
11c4v1gA_



12.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:f0f1 atp synthase subunit c;
PDBTitle: crystal structure of a mycobacterial atp synthase rotor ring
12c5fsgA_



11.1 42
PDB header:viral protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, hantavirus
PDBTitle: structure of the hantavirus nucleoprotein provides insights2 into the mechanism of rna encapsidation and a template for3 drug design
13c4bpp0_



10.1 33
PDB header:ribosome
Chain: 0: PDB Molecule:translation initiation factor eif-1a family protein;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 4
14c6f36E_



9.3 21
PDB header:proton transport
Chain: E: PDB Molecule:mitochondrial atp synthase subunit c;
PDBTitle: polytomella fo model
15c4rndB_



9.2 18
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: crystal structure of the subunit df-assembly of the eukaryotic v-2 atpase.
16c2w5jM_



8.6 31
PDB header:hydrolase
Chain: M: PDB Molecule:atp synthase c chain, chloroplastic;
PDBTitle: structure of the c14-rotor ring of the proton translocating2 chloroplast atp synthase
17c3fbzA_



7.5 18
PDB header:structural protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of orf140 of the archaeal virus acidianus2 filamentous virus 1 (afv1)
18d1d7qa_



6.7 36
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
19c2vy2A_



5.7 46
PDB header:transcription
Chain: A: PDB Molecule:protein leafy;
PDBTitle: structure of leafy transcription factor from arabidopsis2 thaliana in complex with dna from ag-i promoter
20c2ldeA_



5.3 14
PDB header:toxin
Chain: A: PDB Molecule:sarafotoxin-i3;
PDBTitle: solution structure of the long sarafotoxin srtx-i3
21c3j81i_



not modelled 5.1 31
PDB header:ribosome
Chain: I: PDB Molecule:es8;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below