Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2602_(-)_2930354_2930794
DateWed Aug 7 12:50:24 BST 2019
Unique Job ID8cb90ce99909c3b8
SequenceMLLCDTNIWL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.929 Y:42.864 Z:48.748
Model (left) based on template c3zvkC_
Top template information
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
Confidence and coverage
Confidence: 99.9% Coverage: 88%
128 residues ( 88% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3zvkC_



99.9 15
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
2c6nklA_



99.9 18
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
3c4chgC_



99.9 21
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
4c3tndC_



99.9 20
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
5c5l6mC_



99.9 15
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
6d2h1ca1



99.9 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
7c6a7vG_



99.9 17
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
8c5x3tD_



99.9 15
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
9c5wzfB_



99.9 24
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
10c3h87B_



99.8 15
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
11c5sv2A_



99.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
12c4xgrG_



99.8 19
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
13d1v96a1



99.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
14c3dboB_



99.8 16
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
15c2fe1A_



99.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
16d2fe1a1



99.7 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17d1y82a1



99.7 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1w8ia_



99.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c3ix7A_



98.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
20d1v8pa_



98.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c1v8pK_



not modelled 98.7 22
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
22c3i8oA_



not modelled 98.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
23c5ywwA_



not modelled 98.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
24c2lcqA_



not modelled 97.9 12
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
25c5f4hF_



not modelled 97.7 18
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26d1o4wa_



not modelled 97.7 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
27c2hwwC_



not modelled 97.2 19
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5jpqd_



not modelled 95.3 19
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 94.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c2hwyB_



not modelled 94.5 24
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c6g5iy_



not modelled 91.5 12
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
32c4mj7B_



not modelled 80.8 18
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c3v33A_



not modelled 72.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
34c3zddA_



not modelled 70.1 29
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
35c3v32B_



not modelled 69.8 22
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
36d1cmwa2



not modelled 67.2 24
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37c2mdtA_



not modelled 30.6 8
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
38d1tfra2



not modelled 30.1 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c1ut8B_



not modelled 29.2 15
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
40c1cmwA_



not modelled 27.1 24
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
41d1xo1a2



not modelled 18.9 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
42c2izoA_



not modelled 14.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
43c3q8lA_



not modelled 13.3 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
44c4g25A_



not modelled 13.1 21
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
45d1jx4a1



not modelled 10.6 10
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
46c1b43A_



not modelled 9.8 23
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
47c5z6vA_



not modelled 9.7 15
PDB header:protein transport
Chain: A: PDB Molecule:abc-type uncharacterized transport system periplasmic
PDBTitle: crystal structure of a substrate-binding protein from rhodothermus2 marinus
48d1ul1x2



not modelled 9.5 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
49d2j01s1



not modelled 8.0 34
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
50c3dy0B_



not modelled 7.7 44
PDB header:blood clotting, hydrolase inhibitor
Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved pci bound to heparin
51c1lq8H_



not modelled 7.3 44
PDB header:blood clotting
Chain: H: PDB Molecule:plasma serine protease inhibitor;
PDBTitle: crystal structure of cleaved protein c inhibitor
52c1a77A_



not modelled 7.2 23
PDB header:5'-3' exo/endo nuclease
Chain: A: PDB Molecule:flap endonuclease-1 protein;
PDBTitle: flap endonuclease-1 from methanococcus jannaschii
53c5dizB_



not modelled 7.1 22
PDB header:hydrolase
Chain: B: PDB Molecule:proteinaceous rnase p 2;
PDBTitle: crystal structure of nuclear proteinaceous rnase p 2 (prorp2) from a.2 thaliana
54c2jl8S_



not modelled 7.0 34
PDB header:ribosome
Chain: S: PDB Molecule:50s ribosomal protein l18;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome (part 4 of 4).3 this file contains the 50s subunit.
55d1a77a2



not modelled 6.9 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
56c6c34A_



not modelled 6.4 14
PDB header:dna binding protein
Chain: A: PDB Molecule:5'-3' exonuclease;
PDBTitle: mycobacterium smegmatis dna flap endonuclease mutant d125n
57c2qipA_



not modelled 5.9 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633

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