Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2603c_(-)_2930815_2931570
DateWed Aug 7 12:50:24 BST 2019
Unique Job ID4eeb73a748b98cd6
SequenceMSGHSKWATT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.119 Y:40.033 Z:52.214
Model (left) based on template d1lfpa_
Top template information
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
Confidence and coverage
Confidence:100.0% Coverage: 96%
242 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1lfpa_



100.0 46
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
2c4f3qA_



100.0 44
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein cbu_1566;
PDBTitle: structure of a yebc family protein (cbu_1566) from coxiella burnetii
3d1kona_



100.0 48
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
4d1mw7a_



100.0 29
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
5c1u8sB_



68.9 12
PDB header:transcription
Chain: B: PDB Molecule:glycine cleavage system transcriptional
PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor
6c2jsxA_



65.6 15
PDB header:chaperone
Chain: A: PDB Molecule:protein napd;
PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd
7c6bwqB_



63.9 17
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
8c6fqbD_



63.3 13
PDB header:ligase
Chain: D: PDB Molecule:mur ligase family protein;
PDBTitle: murt/gatd peptidoglycan amidotransferase complex from streptococcus2 pneumoniae r6
9c3ibwA_



60.1 9
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase;
PDBTitle: crystal structure of the act domain from gtp pyrophosphokinase of2 chlorobium tepidum. northeast structural genomics consortium target3 ctr148a
10d2auna2



53.4 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
11c2zf8A_



51.0 13
PDB header:structural protein
Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor;
PDBTitle: crystal structure of moty
12c2e1cA_



50.2 14
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
13d2cyya2



50.1 14
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
14c2nyiB_



48.1 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:unknown protein;
PDBTitle: crystal structure of an unknown protein from galdieria sulphuraria
15c2zbcH_



47.5 16
PDB header:transcription
Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc;
PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7.
16c3fiaA_



44.4 15
PDB header:protein binding
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: crystal structure of the eh 1 domain from human intersectin-1 protein.2 northeast structural genomics consortium target hr3646e.
17c2y9kG_



43.4 8
PDB header:protein transport
Chain: G: PDB Molecule:protein invg;
PDBTitle: three-dimensional model of salmonella's needle complex at subnanometer2 resolution
18c2w0cS_



43.1 28
PDB header:virus
Chain: S: PDB Molecule:protein p3;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
19c2cveA_



40.4 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1053;
PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8
20c3k85B_



37.6 16
PDB header:transferase
Chain: B: PDB Molecule:d-glycero-d-manno-heptose 1-phosphate kinase;
PDBTitle: crystal structure of a d-glycero-d-manno-heptose 1-phosphate2 kinase from bacteriodes thetaiotaomicron
21c4h1hB_



not modelled 36.6 22
PDB header:hydrolase
Chain: B: PDB Molecule:lmo1638 protein;
PDBTitle: crystal structure of mccf homolog from listeria monocytogenes egd-e
22c3lk7A_



not modelled 36.1 13
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-glutamate2 (murd) ligase from streptococcus agalactiae to 1.5a
23c3c19A_



not modelled 35.8 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
24c1vi7A_



not modelled 35.2 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yigz;
PDBTitle: crystal structure of an hypothetical protein
25c2p6tH_



not modelled 34.9 7
PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
26d1xp3a1



not modelled 34.2 11
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:Endonuclease IV
27c1zrsB_



not modelled 33.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: wild-type ld-carboxypeptidase
28d1i1ga2



not modelled 33.2 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
29c2kgrA_



not modelled 32.8 13
PDB header:protein binding
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: solution structure of protein itsn1 from homo sapiens.2 northeast structural genomics consortium target hr5524a
30c4e5sC_



not modelled 31.9 25
PDB header:hydrolase
Chain: C: PDB Molecule:mccflike protein (ba_5613);
PDBTitle: crystal structure of mccflike protein (ba_5613) from bacillus2 anthracis str. ames
31d2nzca1



not modelled 31.2 8
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:TM1266-like
32d1ewqa2



not modelled 30.0 28
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
33c2f06B_



not modelled 29.7 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron
34c1fpqA_



not modelled 29.6 23
PDB header:transferase
Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase;
PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase
35c2lvwA_



not modelled 29.5 12
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase isozyme 1 small subunit;
PDBTitle: solution nmr studies of the dimeric regulatory subunit ilvn of the2 e.coli acetohydroxyacid synthase i (ahas i)
36c6nkoA_



not modelled 29.0 26
PDB header:unknown function
Chain: A: PDB Molecule:forh;
PDBTitle: crystal structure of forh
37d1zl0a2



not modelled 29.0 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
38c3lmzA_



not modelled 28.6 7
PDB header:isomerase
Chain: A: PDB Molecule:putative sugar isomerase;
PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution
39c4yajA_



not modelled 28.5 12
PDB header:ligase
Chain: A: PDB Molecule:alpha subunit of acetyl-coenzyme a synthetase
PDBTitle: ca. korarchaeum cryptofilum dinucleotide forming acetyl-coenzyme a2 synthetase 1 (apo form)
40c3k2qA_



not modelled 28.3 29
PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
41c2vsaA_



not modelled 27.4 45
PDB header:toxin
Chain: A: PDB Molecule:mosquitocidal toxin;
PDBTitle: structure and mode of action of a mosquitocidal holotoxin
42c2kzzA_



not modelled 27.0 24
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
43c1lvaA_



not modelled 26.1 11
PDB header:translation
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
44c3dx5A_



not modelled 25.9 11
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
45d1ub9a_



not modelled 25.2 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
46c2plyB_



not modelled 25.2 13
PDB header:translation/rna
Chain: B: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
47d2ex4a1



not modelled 25.1 24
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
48c1i1gA_



not modelled 25.0 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
49c3bzqA_



not modelled 24.8 35
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:nitrogen regulatory protein p-ii;
PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis
50c3thzA_



not modelled 24.3 33
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna mismatch repair protein msh2;
PDBTitle: human mutsbeta complexed with an idl of 6 bases (loop6) and adp
51d1kkca2



not modelled 24.0 37
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
52d1qmha1



not modelled 23.7 21
Fold:Thioredoxin fold
Superfamily:RNA 3'-terminal phosphate cyclase, RPTC, insert domain
Family:RNA 3'-terminal phosphate cyclase, RPTC, insert domain
53d1sc6a3



not modelled 23.6 16
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
54d1j5ya2



not modelled 23.6 20
Fold:HPr-like
Superfamily:Putative transcriptional regulator TM1602, C-terminal domain
Family:Putative transcriptional regulator TM1602, C-terminal domain
55d1cc8a_



not modelled 23.5 12
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
56c2khnA_



not modelled 23.1 15
PDB header:signaling protein
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: nmr solution structure of the eh 1 domain from human2 intersectin-1 protein. northeast structural genomics3 consortium target hr3646e.
57d1mwza_



not modelled 22.7 25
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
58c2e7xA_



not modelled 22.2 10
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
59c2e1aD_



not modelled 21.9 11
PDB header:transcription
Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc;
PDBTitle: crystal structure of ffrp-dm1
60c5d4pA_



not modelled 21.8 20
PDB header:signaling protein
Chain: A: PDB Molecule:putative nitrogen regulatory protein p-ii glnb;
PDBTitle: structure of cpii bound to adp and bicarbonate, from thiomonas2 intermedia k12
61c1p65A_



not modelled 21.8 31
PDB header:viral protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: crystal structure of the nucleocapsid protein of porcine reproductive2 and respiratory syndrome virus (prrsv)
62d1p65a_



not modelled 21.8 31
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Arterivirus nucleocapsid protein
63c3l7pA_



not modelled 20.7 20
PDB header:transcription
Chain: A: PDB Molecule:putative nitrogen regulatory protein pii;
PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans
64c3n4sC_



not modelled 20.5 11
PDB header:replication
Chain: C: PDB Molecule:monopolin complex subunit csm1;
PDBTitle: structure of csm1 c-terminal domain, p21212 form
65c2djwF_



not modelled 20.5 12
PDB header:unknown function
Chain: F: PDB Molecule:probable transcriptional regulator, asnc family;
PDBTitle: crystal structure of ttha0845 from thermus thermophilus hb8
66d1gtra1



not modelled 20.4 26
Fold:Ribosomal protein L25-like
Superfamily:Ribosomal protein L25-like
Family:Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
67c3fybA_



not modelled 20.3 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
68c1b4aA_



not modelled 20.3 14
PDB header:repressor
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
69c3uagA_



not modelled 20.0 16
PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
70d1wb9a2



not modelled 20.0 39
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
71d1jr3d2



not modelled 19.9 14
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
72d4pfka_



not modelled 19.7 30
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
73c4ozlA_



not modelled 19.5 25
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen regulatory protein p-ii;
PDBTitle: glnk2 from haloferax mediterranei complexed with amp
74c3canA_



not modelled 19.3 26
PDB header:lyase activator
Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme;
PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482
75c5n9jB_



not modelled 19.2 15
PDB header:transcription
Chain: B: PDB Molecule:mediator of rna polymerase ii transcription subunit 10;
PDBTitle: core mediator of transcriptional regulation
76c3i4pA_



not modelled 18.7 8
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
77c1ewrA_



not modelled 17.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of taq muts
78d2cg4a2



not modelled 17.8 10
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
79d1fima_



not modelled 17.7 11
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
80d1lxja_



not modelled 17.2 7
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
81d2o35a1



not modelled 17.0 33
Fold:SMc04008-like
Superfamily:SMc04008-like
Family:SMc04008-like
82c2o35A_



not modelled 17.0 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
83d1lxna_



not modelled 16.6 21
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
84c2hw5F_



not modelled 16.5 21
PDB header:lyase
Chain: F: PDB Molecule:enoyl-coa hydratase;
PDBTitle: the crystal structure of human enoyl-coenzyme a (coa) hydratase short2 chain 1, echs1
85c5z01A_



not modelled 16.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:murein tetrapeptide carboxypeptidase;
PDBTitle: native escherichia coli l,d-carboxypeptidase a (ldca)
86c2o8dB_



not modelled 16.3 22
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna mismatch repair protein msh6;
PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair
87c5xoeA_



not modelled 15.9 22
PDB header:transferase
Chain: A: PDB Molecule:atp-dependent 6-phosphofructokinase;
PDBTitle: crystal structure of the apo staphylococcus aureus phosphofructokinase
88c5ubbA_



not modelled 15.7 18
PDB header:transferase
Chain: A: PDB Molecule:alpha n-terminal protein methyltransferase 1b;
PDBTitle: crystal structure of human alpha n-terminal protein methyltransferase2 1b
89c1zxxA_



not modelled 15.7 22
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
90d1ul3a_



not modelled 15.6 31
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
91c5odcD_



not modelled 15.3 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:methyl-viologen reducing hydrogenase subunit d;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus at 2.3 a resolution
92d2r9ga1



not modelled 15.3 25
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
93c4bucA_



not modelled 15.3 5
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: crystal structure of murd ligase from thermotoga maritima in apo form
94d1pfka_



not modelled 15.2 22
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
95d2cfxa2



not modelled 15.0 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
96d1k47a2



not modelled 14.9 12
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Phosphomevalonate kinase (PMK)
97d1hwua_



not modelled 14.9 27
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
98d1uwva2



not modelled 14.6 21
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:(Uracil-5-)-methyltransferase
99c2m45A_



not modelled 14.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: nmr solution structure of the c-terminus of the minichromosome2 maintenance protein mcm from sulfolobus solfataricus

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