Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2607_(pdxH)_2934208_2934882
DateWed Aug 7 12:50:25 BST 2019
Unique Job IDec2de9654be17e0e
SequenceMDDDAQMVAI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.674 Y:65.259 Z:46.899
Model (left) based on template d2a2ja1
Top template information
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
Confidence and coverage
Confidence:100.0% Coverage: 87%
195 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2a2ja1
100.0 100
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
2c2a2jA_
100.0 100
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
3d1nrga_
100.0 39
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
4c1nrgA_
100.0 39
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
5d1ci0a_
100.0 37
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
6d1dnla_
100.0 41
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
7d1t9ma_
100.0 33
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
8d1ty9a_
100.0 28
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
9c4hmwB_
100.0 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
10c2i51B_
100.0 20
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
11c2ou5B_
100.0 15
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
12d2i02a1
99.9 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
13c3dmbA_
99.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
14d2hq7a1
99.9 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
15c2re7A_
99.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
16c2hhzA_
99.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
17d2fhqa1
99.8 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
18c3ec6A_
99.8 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
19c2ig6B_
99.8 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
20c3u34D_
99.8 20
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
21c3tgvD_
not modelled 99.8 21
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
22c3db0B_
not modelled 99.8 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
23d1vl7a_
not modelled 99.8 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
24c2iabB_
not modelled 99.8 18
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
25c2qeaB_
not modelled 99.8 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
26d2asfa1
not modelled 99.7 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
27d1rfea_
not modelled 99.6 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
28c3f7eB_
not modelled 99.5 17
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
29c2htdB_
not modelled 99.5 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
30d2htia1
not modelled 99.5 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
31c2htiA_
not modelled 99.5 11
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
32c5escD_
not modelled 99.5 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
33d1w9aa_
not modelled 99.4 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
34c2q9kA_
not modelled 99.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
35c4zkyB_
not modelled 99.3 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
36d2arza1
not modelled 99.2 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
37d1flma_
not modelled 99.1 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
38c5bncB_
not modelled 99.1 21
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
39d2fg9a1
not modelled 99.1 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
40c3dnhB_
not modelled 99.1 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
41c3gasA_
not modelled 99.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
42d2hq9a1
not modelled 98.9 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
43c3ba3A_
not modelled 98.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-like protein;
PDBTitle: crystal structure of pyridoxamine 5'-phosphate oxidase-like protein2 (np_783940.1) from lactobacillus plantarum at 1.55 a resolution
44c3fkhB_
not modelled 98.9 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
45c6eciQ_
not modelled 98.9 13
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
46c3u0iA_
not modelled 98.9 17
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
47c3cp3A_
not modelled 98.7 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
48c4ybnB_
not modelled 98.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
49d2fura1
not modelled 98.5 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
50d1xhna1
not modelled 98.4 23
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
51d2vpaa1
not modelled 98.1 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
52c2ol5B_
not modelled 98.0 15
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
53c6rk0A_
not modelled 97.8 13
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
54c4n7rD_
not modelled 97.2 17
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
55c3r5yC_
not modelled 96.8 17
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
56c3r5zB_
not modelled 96.6 15
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
57c3r5wO_
not modelled 96.2 14
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
58c4y9iA_
not modelled 96.1 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
59c3h96B_
not modelled 96.1 18
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
60c2ptfB_
not modelled 81.7 6
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mth_863;
PDBTitle: crystal structure of protein mth_863 from methanobacterium2 thermoautotrophicum bound to fmn
61d2ptfa1
not modelled 72.7 6
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
62c3psqA_
not modelled 40.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical exported protein;
PDBTitle: crystal structure of spy0129, a streptococcus pyogenes class b sortase2 involved in pilus biogenesis
63c5vb0E_
not modelled 38.9 14
PDB header:transferase
Chain: E: PDB Molecule:fosfomycin resistance protein fosa3;
PDBTitle: crystal structure of fosfomycin resistance protein fosa3
64c3bjqA_
not modelled 35.3 16
PDB header:viral protein
Chain: A: PDB Molecule:phage-related protein;
PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution
65c5yfkA_
not modelled 34.0 18
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein sortase b;
PDBTitle: x-ray structure of a mutant form c232s of clostridium perfringens2 sortase b
66c5b23B_
not modelled 27.2 13
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein sortase b;
PDBTitle: x-ray structure of clostridium perfringens sortase b
67d2imla1
not modelled 26.4 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
68c3b5mD_
not modelled 22.5 16
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved uncharacterized protein from2 rhodopirellula baltica
69c6gf8B_
not modelled 22.3 30
PDB header:cell adhesion
Chain: B: PDB Molecule:zona pellucida sperm-binding protein 1,zona pellucida
PDBTitle: molecular basis of egg coat filament cross-linking: structure of the2 glycosylated zp1 zp-n1 domain homodimer
70c4ux7A_
not modelled 21.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidase c60b, sortase b;
PDBTitle: structure of a clostridium difficile sortase
71d1eoqa_
not modelled 20.9 16
Fold:Acyl carrier protein-like
Superfamily:Retrovirus capsid dimerization domain-like
Family:Retrovirus capsid protein C-terminal domain
72c4y4qA_
not modelled 17.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:sortase, srtb family;
PDBTitle: crystal structure of sortase b from type ii pilus of streptococcus2 pneumoniae
73c5mrwG_
not modelled 17.5 24
PDB header:hydrolase
Chain: G: PDB Molecule:potassium-transporting atpase kdpc subunit;
PDBTitle: structure of the kdpfabc complex
74d2oqza1
not modelled 15.2 24
Fold:Sortase
Superfamily:Sortase
Family:Sortase
75d1ejea_
not modelled 14.6 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
76c3lr4A_
not modelled 14.3 16
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: periplasmic domain of the riss sensor protein from burkholderia2 pseudomallei, barium phased at low ph
77d1usca_
not modelled 13.5 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
78c4z85A_
not modelled 12.8 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitrobenzoate nitroreductase;
PDBTitle: crystal structur of pseudomonas fluorescens 2-nitrobenzoate 2-2 nitroreductase nbaa
79d1in0a2
not modelled 11.7 31
Fold:Ferredoxin-like
Superfamily:YajQ-like
Family:YajQ-like
80c5cohA_
not modelled 11.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:frne protein;
PDBTitle: crystal structure of a novel disulfide oxidoreductase from deinococcus2 radiodurans crystallized in presence of beta-mercaptoethanol
81c5jcvA_
not modelled 10.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:lmo2181 protein;
PDBTitle: sortase b from listeria monocytogenes.
82d2nr4a1
not modelled 10.5 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
83c2kp7A_
not modelled 10.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endonuclease mus81;
PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
84d2dbsa1
not modelled 10.3 45
Fold:TTHC002-like
Superfamily:TTHC002-like
Family:TTHC002-like
85c5ja9D_
not modelled 10.0 13
PDB header:toxin
Chain: D: PDB Molecule:toxin higb-2;
PDBTitle: crystal structure of the higb2 toxin in complex with nb6
86d1qwza_
not modelled 9.8 22
Fold:Sortase
Superfamily:Sortase
Family:Sortase
87c3bnkB_
not modelled 9.8 17
PDB header:electron transport
Chain: B: PDB Molecule:flavoredoxin;
PDBTitle: x-ray crystal structure of flavoredoxin from methanosarcina2 acetivorans
88d1rz0a_
not modelled 9.3 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
89c3sk7B_
not modelled 8.9 14
PDB header:replication inhibitor
Chain: B: PDB Molecule:protein seqa;
PDBTitle: crystal structure of v. cholerae seqa
90c5fr7B_
not modelled 8.8 28
PDB header:signaling protein
Chain: B: PDB Molecule:amyr;
PDBTitle: erwinia amylovora amyr amylovoran repressor, a member of the ybjn2 protein family
91c4l82D_
not modelled 8.7 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:rifea.00250.a;
PDBTitle: structure of a putative oxidoreductase from rickettsia felis
92c2yufA_
not modelled 8.5 24
PDB header:transcription
Chain: A: PDB Molecule:ngfi-a-binding protein 1;
PDBTitle: solution structure of the ncd2 domain in human2 transcriptional repressor nab1 protein
93c4pl8H_
not modelled 8.2 20
PDB header:contractile protein/structural protein
Chain: H: PDB Molecule:thymosin beta-4,protein cordon-bleu,thymosin beta-4;
PDBTitle: structure of rabbit skeletal muscle actin in complex with a hybrid2 peptide comprising thymosin beta4 and the lysine-rich region of3 cordon-bleu
94c1vw48_
not modelled 7.8 19
PDB header:ribosome
Chain: 8: PDB Molecule:54s ribosomal protein l13, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
95c4aezC_
not modelled 7.6 14
PDB header:cell cycle
Chain: C: PDB Molecule:mitotic spindle checkpoint component mad3;
PDBTitle: crystal structure of mitotic checkpoint complex
96d1i0ra_
not modelled 7.5 6
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
97c1in0B_
not modelled 7.5 31
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yajq protein;
PDBTitle: yajq protein (hi1034)
98c3fmtF_
not modelled 7.3 9
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
99c6raoF_
not modelled 7.1 21
PDB header:virus like particle
Chain: F: PDB Molecule:afp5;
PDBTitle: cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold2 symmetrised

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