Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2611c_(-)_2939022_2939972
DateWed Aug 7 12:50:25 BST 2019
Unique Job ID583626bc9cd16f1a
SequenceVIAGLKGLKL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.233 Y:64.157 Z:50.280
Model (left) based on template c5knkB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:lipid a biosynthesis lauroyl acyltransferase;
PDBTitle: lipid a secondary acyltransferase lpxm from acinetobacter baumannii2 with catalytic residue substitution (e127a)
Confidence and coverage
Confidence:100.0% Coverage: 87%
276 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5knkB_



100.0 17
PDB header:transferase
Chain: B: PDB Molecule:lipid a biosynthesis lauroyl acyltransferase;
PDBTitle: lipid a secondary acyltransferase lpxm from acinetobacter baumannii2 with catalytic residue substitution (e127a)
2c5f34A_



100.0 77
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannoside acyltransferase;
PDBTitle: crystal structure of membrane associated pata from mycobacterium2 smegmatis in complex with s-hexadecyl coenzyme a - p21 space group
3c5kymA_



98.8 16
PDB header:transferase
Chain: A: PDB Molecule:1-acyl-sn-glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of the 1-acyl-sn-glycerophosphate (lpa)2 acyltransferase, plsc, from thermotoga maritima
4c4nmnA_



53.6 9
PDB header:replication
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: aquifex aeolicus replicative helicase (dnab) complexed with adp, at2 3.3 resolution
5c4p7dA_



45.2 16
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
6c2j5bA_



43.8 19
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba polyphaga2 mimivirus complexed with tyrosynol
7c1ltxA_



39.0 14
PDB header:transferase/protein binding
Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit;
PDBTitle: structure of rab escort protein-1 in complex with rab geranylgeranyl2 transferase and isoprenoid
8d1qopb_



38.6 18
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
9d1vlia2



38.4 15
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
10d1v8za1



37.0 18
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
11c2zy4F_



36.3 29
PDB header:lyase
Chain: F: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
12c4qysA_



36.0 12
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain 2;
PDBTitle: trpb2 enzymes
13d1r6ta2



36.0 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
14c3cwcB_



36.0 14
PDB header:transferase
Chain: B: PDB Molecule:putative glycerate kinase 2;
PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2
15c1r6uB_



35.3 17
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity
16d1v71a1



30.8 14
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
17c3lubE_



29.4 22
PDB header:hydrolase
Chain: E: PDB Molecule:putative creatinine amidohydrolase;
PDBTitle: crystal structure of putative creatinine amidohydrolase (yp_211512.1)2 from bacteroides fragilis nctc 9343 at 2.11 a resolution
18c3kt3D_



27.5 17
PDB header:ligase
Chain: D: PDB Molecule:tryptophanyl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of s. cerevisiae tryptophanyl-trna synthetase in2 complex with trpamp
19c4wbdA_



27.0 13
PDB header:ligase
Chain: A: PDB Molecule:bshc;
PDBTitle: the crystal structure of bshc from bacillus subtilis complexed with2 citrate and adp
20c2quiB_



26.8 14
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structures of human tryptophanyl-trna synthetase in2 complex with tryptophanamide and atp
21c3tzeA_



not modelled 26.1 17
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of a tryptophanyl-trna synthetase from2 encephalitozoon cuniculi bound to tryptophan
22c3f6tA_



not modelled 25.7 19
PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
23c6hulB_



not modelled 24.4 13
PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase beta chain 1;
PDBTitle: sulfolobus solfataricus tryptophan synthase ab complex
24c4ix1B_



not modelled 23.4 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of hypothetical protein opag_01669 from rhodococcus2 opacus pd630, target 016205
25c3focB_



not modelled 23.1 20
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from giardia lamblia
26c1tdjA_



not modelled 22.7 15
PDB header:allostery
Chain: A: PDB Molecule:biosynthetic threonine deaminase;
PDBTitle: threonine deaminase (biosynthetic) from e. coli
27c2o2jA_



not modelled 22.5 17
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: mycobacterium tuberculosis tryptophan synthase beta chain dimer2 (apoform)
28c2cycB_



not modelled 22.0 11
PDB header:ligase
Chain: B: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii
29c6qelB_



not modelled 21.6 12
PDB header:replication
Chain: B: PDB Molecule:replicative dna helicase;
PDBTitle: e. coli dnabc apo complex
30c5odcD_



not modelled 21.0 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:methyl-viologen reducing hydrogenase subunit d;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus at 2.3 a resolution
31c1x1qA_



not modelled 20.8 20
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8
32c2advB_



not modelled 20.1 38
PDB header:hydrolase
Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase;
PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism
33c3no4A_



not modelled 20.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:creatinine amidohydrolase;
PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution
34c3jxeB_



not modelled 20.1 20
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp
35d1v7za_



not modelled 19.9 23
Fold:Creatininase
Superfamily:Creatininase
Family:Creatininase
36c6bbmA_



not modelled 18.7 12
PDB header:replication
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: mechanisms of opening and closing of the bacterial replicative2 helicase: the dnab helicase and lambda p helicase loader complex
37c6o60A_



not modelled 18.6 10
PDB header:transferase
Chain: A: PDB Molecule:protein prenyltransferase alpha subunit repeat-containing
PDBTitle: crystal structure of ggtase3-fbxl2-skp1 complex
38c4j75B_



not modelled 18.4 20
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of a parasite trna synthetase, product-bound
39c3hv0A_



not modelled 18.2 14
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum
40c2ip1A_



not modelled 17.9 17
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase
41c5cvcB_



not modelled 16.9 11
PDB header:isomerase
Chain: B: PDB Molecule:serine racemase;
PDBTitle: structure of maize serine racemase
42c2h1fB_



not modelled 16.8 11
PDB header:transferase
Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1;
PDBTitle: e. coli heptosyltransferase waac with adp
43c1vliA_



not modelled 16.7 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
44c4f4fB_



not modelled 16.2 18
PDB header:lyase
Chain: B: PDB Molecule:threonine synthase;
PDBTitle: x-ray crystal structure of plp bound threonine synthase from brucella2 melitensis
45d1jcua_



not modelled 16.2 7
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
46d1tuwa_



not modelled 15.7 18
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Polyketide synthesis cyclase
47d2obba1



not modelled 15.4 20
Fold:HAD-like
Superfamily:HAD-like
Family:BT0820-like
48c1r6tA_



not modelled 14.5 21
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of human tryptophanyl-trna synthetase
49d1k7ja_



not modelled 14.4 10
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
50c3hzrD_



not modelled 14.3 14
PDB header:ligase
Chain: D: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica
51c3sz8D_



not modelled 14.2 14
PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
52c5uq2B_



not modelled 13.3 10
PDB header:transferase/cell cycle
Chain: B: PDB Molecule:speedy protein a;
PDBTitle: crystal structure of human cdk2-spy1 complex
53c3bgwD_



not modelled 13.1 11
PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
54d2pw6a1



not modelled 12.6 18
Fold:Phosphorylase/hydrolase-like
Superfamily:LigB-like
Family:LigB-like
55c3r0zA_



not modelled 12.5 12
PDB header:lyase
Chain: A: PDB Molecule:d-serine dehydratase;
PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium
56c5kinD_



not modelled 12.3 17
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
57d1hrua_



not modelled 12.3 23
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
58c3iraA_



not modelled 12.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1
59c2fyfB_



not modelled 11.9 13
PDB header:transferase
Chain: B: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
60c2pqmA_



not modelled 11.7 20
PDB header:lyase
Chain: A: PDB Molecule:cysteine synthase;
PDBTitle: crystal structure of cysteine synthase (oass) from entamoeba2 histolytica at 1.86 a resolution
61c6ncsB_



not modelled 11.7 18
PDB header:biosynthetic protein
Chain: B: PDB Molecule:n-acetylneuraminic acid (sialic acid) synthetase;
PDBTitle: crystal structure of n-acetylneuraminic acid (sialic acid) synthetase2 from leptospira borgpetersenii serovar hardjo-bovis in complex with3 citrate
62c3i05B_



not modelled 11.6 23
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from trypanosoma brucei
63d2lfba_



not modelled 11.5 4
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
64c4uaqA_



not modelled 11.5 14
PDB header:protein transport
Chain: A: PDB Molecule:protein translocase subunit seca 2;
PDBTitle: crystal structure of the accessory translocation atpase, seca2, from2 mycobacterium tuberculosis
65c2gn0A_



not modelled 10.9 13
PDB header:lyase
Chain: A: PDB Molecule:threonine dehydratase catabolic;
PDBTitle: crystal structure of dimeric biodegradative threonine deaminase (tdcb)2 from salmonella typhimurium at 1.7 a resolution (triclinic form with3 one complete subunit built in alternate conformation)
66c2l7kA_



not modelled 10.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein cd1104.2 from clostridium difficile,2 northeast structural genomics consortium target cfr130
67d1d9ea_



not modelled 10.7 13
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
68d1j7ja_



not modelled 10.6 10
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
69c5iejA_



not modelled 10.5 18
PDB header:protein
Chain: A: PDB Molecule:sdrg;
PDBTitle: solution structure of the bef3-activated conformation of sdrg from2 pseudomonas melonis fr1
70c5ohxB_



not modelled 10.3 18
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-synthase;
PDBTitle: structure of active cystathionine b-synthase from apis mellifera
71d1hgxa_



not modelled 10.2 14
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
72c3a05A_



not modelled 10.1 15
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan
73c6f9oA_



not modelled 10.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:haloalkane dehalogenase;
PDBTitle: crystal structure of cold-adapted haloalkane dehalogenase dpca from2 psychrobacter cryohalolentis k5
74c3eywA_



not modelled 9.9 9
PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
75c3m8yC_



not modelled 9.7 13
PDB header:isomerase
Chain: C: PDB Molecule:phosphopentomutase;
PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation
76d1tdja1



not modelled 9.7 12
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
77c2kjwA_



not modelled 9.6 5
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: solution structure and backbone dynamics of the permutant p54-55
78c2rkbE_



not modelled 9.5 12
PDB header:lyase
Chain: E: PDB Molecule:serine dehydratase-like;
PDBTitle: serine dehydratase like-1 from human cancer cells
79c2d1fA_



not modelled 9.3 19
PDB header:lyase
Chain: A: PDB Molecule:threonine synthase;
PDBTitle: structure of mycobacterium tuberculosis threonine synthase
80c2ov3A_



not modelled 9.0 20
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein component of an abc type zinc
PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc bound
81c3zfiB_



not modelled 8.8 21
PDB header:transport protein
Chain: B: PDB Molecule:rap1a protein;
PDBTitle: rap1a protein (sma2260) from serratia marcescens
82d1nj8a2



not modelled 8.8 22
Fold:IF3-like
Superfamily:C-terminal domain of ProRS
Family:C-terminal domain of ProRS
83d1o60a_



not modelled 8.6 11
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase
84c4negA_



not modelled 8.5 17
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: the crystal structure of tryptophan synthase subunit beta from2 bacillus anthracis str. 'ames ancestor'
85c2lpmA_



not modelled 8.5 9
PDB header:transcription regulator
Chain: A: PDB Molecule:two-component response regulator;
PDBTitle: chemical shift and structure assignments for sma0114
86c6gtmA_



not modelled 8.5 13
PDB header:signaling protein
Chain: A: PDB Molecule:aldo-keto reductase family protein;
PDBTitle: crystal structure of smba in complex with ppgpp.
87c3x43F_



not modelled 8.3 17
PDB header:transferase
Chain: F: PDB Molecule:o-ureido-l-serine synthase;
PDBTitle: crystal structure of o-ureido-l-serine synthase
88c6g1cV_



not modelled 8.3 5
PDB header:antitoxin
Chain: V: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the n-terminal domain of burkholderia2 pseudomallei antitoxin hicb
89d1iyjb4



not modelled 8.2 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
90c4q0mA_



not modelled 8.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of pyrococcus furiosus l-asparaginase
91d1pwha_



not modelled 8.0 16
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
92c3v7nA_



not modelled 8.0 16
PDB header:lyase
Chain: A: PDB Molecule:threonine synthase;
PDBTitle: crystal structure of threonine synthase (thrc) from from burkholderia2 thailandensis
93c2hyiJ_



not modelled 8.0 11
PDB header:hydrolase/rna binding protein/rna
Chain: J: PDB Molecule:protein casc3;
PDBTitle: structure of the human exon junction complex with a trapped2 dead-box helicase bound to rna
94c3l6cA_



not modelled 8.0 12
PDB header:isomerase
Chain: A: PDB Molecule:serine racemase;
PDBTitle: x-ray crystal structure of rat serine racemase in complex with2 malonate a potent inhibitor
95d1p3qq_



not modelled 7.9 4
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:CUE domain
96c3s3tD_



not modelled 7.9 17
PDB header:chaperone
Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa
PDBTitle: universal stress protein uspa from lactobacillus plantarum
97d1wkva1



not modelled 7.9 16
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
98c4airB_



not modelled 7.7 21
PDB header:transferase
Chain: B: PDB Molecule:cysteine synthase;
PDBTitle: leishmania major cysteine synthase
99d1d8da_



not modelled 7.7 10
Fold:alpha-alpha superhelix
Superfamily:Protein prenylyltransferase
Family:Protein prenylyltransferase

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below