Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2614A_(-)_2943386_2943613
DateWed Aug 7 12:50:25 BST 2019
Unique Job ID98f3dc7879ebd1e4
SequenceVGDRYRAGDR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:13.756 Y:24.484 Z:25.706
Model (left) based on template c4mknA_
Top template information
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of chloroplastic triosephosphate isomerase from2 chlamydomonas reinhardtii at 1.1 a of resolution
Confidence and coverage
Confidence: 94.6% Coverage: 31%
23 residues ( 31% of your sequence) have been modelled with 94.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 61% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4mknA_
94.6 48
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of chloroplastic triosephosphate isomerase from2 chlamydomonas reinhardtii at 1.1 a of resolution
2c3m9yB_
94.6 39
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution
3c5zg5B_
94.6 48
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase sadsubaaa mutant from2 opisthorchis viverrini
4d1ttja_
94.6 48
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
5c5eywB_
94.5 43
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of litopenaeus vannamei triosephosphate isomerase2 complexed with 2-phosphoglycolic acid
6d1o5xa_
94.4 43
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
7d1neya_
94.3 39
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
8c4y9aB_
94.3 35
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from streptomyces2 coelicolor
9c4x22A_
94.3 43
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of leptospira interrogans triosephosphate isomerase2 (litim)
10d1mo0a_
94.3 35
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
11c2dp3A_
94.3 30
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia
12c3qstA_
94.2 52
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase, putative;
PDBTitle: crystal structure of trichomonas vaginalis triosephosphate isomerase2 tvag_096350 gene (val-45 variant)
13c3th6B_
94.2 35
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus.
14c3gvgA_
94.2 61
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from mycobacterium2 tuberculosis
15d1m6ja_
94.2 43
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
16d1kv5a_
94.1 48
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
17d1sw3a_
94.1 48
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
18d2btma_
94.0 43
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
19c5ujwD_
94.0 35
PDB header:isomerase
Chain: D: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from francisella2 tularensis subsp. tularensis schu s4
20d1r2ra_
94.0 48
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
21c4obtA_
not modelled 94.0 43
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase, cytosolic;
PDBTitle: crystal structure of arabidopsis thaliana cytosolic triose phosphate2 isomerase
22c1yyaA_
not modelled 94.0 52
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8
23c4nvtD_
not modelled 93.9 48
PDB header:isomerase
Chain: D: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from brucella2 melitensis
24c5uprA_
not modelled 93.9 43
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: x-ray structure of a putative triosephosphate isomerase from2 toxoplasma gondii me49
25c4ohqB_
not modelled 93.8 39
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase, chloroplastic;
PDBTitle: crystal structure of chloroplast triose phosphate isomerase from2 arabidopsis thaliana
26c4y8fA_
not modelled 93.8 35
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from clostridium2 perfringens
27d1n55a_
not modelled 93.8 35
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
28d1b9ba_
not modelled 93.7 48
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
29c4y90B_
not modelled 93.7 39
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from deinococcus2 radiodurans
30d1trea_
not modelled 93.7 35
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
31c2jgqB_
not modelled 93.7 30
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori
32d1suxa_
not modelled 93.6 39
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
33c3krsB_
not modelled 93.6 39
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution
34c6bveA_
not modelled 93.5 35
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: triosephosphate isomerase of synechocystis in complex with 2-2 phosphoglycolic acid
35d1aw1a_
not modelled 93.4 35
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
36c3kxqB_
not modelled 93.3 39
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from bartonella2 henselae at 1.6a resolution
37c4g1kB_
not modelled 93.2 39
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from burkholderia2 thailandensis
38c4y96B_
not modelled 92.6 43
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from gemmata2 obscuriglobus
39c5ibxB_
not modelled 92.4 50
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: 1.65 angstrom crystal structure of triosephosphate isomerase (tim)2 from streptococcus pneumoniae
40c3s6dA_
not modelled 91.8 39
PDB header:isomerase
Chain: A: PDB Molecule:putative triosephosphate isomerase;
PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis
41d1ed7a_
not modelled 31.2 44
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
42c2d49A_
not modelled 18.1 38
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase c;
PDBTitle: solution structure of the chitin-binding domain of2 streptomyces griseus chitinase c
43c4nz3A_
not modelled 16.8 56
PDB header:hydrolase
Chain: A: PDB Molecule:deacetylase da1;
PDBTitle: structure of vibrio cholerae chitin de-n-acetylase in complex with2 di(n-acetyl-d-glucosamine) (cbs) in p 21 21 21
44c4n71A_
not modelled 16.7 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:predicted hd phosphohydrolase phnz;
PDBTitle: x-ray crystal structure of 2-amino-1-hydroxyethylphosphonate-bound2 phnz
45d1goia1
not modelled 14.7 38
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
46c4m6tA_
not modelled 14.1 39
PDB header:transcription regulator
Chain: A: PDB Molecule:rna polymerase ii-associated factor 1 homolog, linker, rna
PDBTitle: structure of human paf1 and leo1 complex
47d1aiwa_
not modelled 13.5 31
Fold:WW domain-like
Superfamily:Carbohydrate binding domain
Family:Carbohydrate binding domain
48d2phcb1
not modelled 13.3 32
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
49d2j01i1
not modelled 10.3 38
Fold:Ribosomal protein L9 C-domain
Superfamily:Ribosomal protein L9 C-domain
Family:Ribosomal protein L9 C-domain
50c1txkA_
not modelled 9.8 29
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
51d1txka2
not modelled 9.2 29
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:MdoG-like
52c6npaD_
not modelled 9.1 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:tmpb, (r)-1-hydroxy-2-trimethylaminoethylphosphonate
PDBTitle: x-ray crystal structure of tmpb, (r)-1-hydroxy-2-2 trimethylaminoethylphosphonate oxygenase, with (r)-1-hydroxy-2-3 trimethylaminoethylphosphonate
53c2rtsA_
not modelled 9.0 50
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: chitin binding domain1
54d1hg3a_
not modelled 8.5 22
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
55d1hnra_
not modelled 8.3 35
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
56d2asba1
not modelled 7.9 40
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
57d1jhsa_
not modelled 6.8 38
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:Ran-binding protein mog1p
58d1jlxa2
not modelled 6.5 38
Fold:beta-Trefoil
Superfamily:Agglutinin
Family:Agglutinin
59d1od6a_
not modelled 6.3 50
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
60c5yfgA_
not modelled 6.2 34
PDB header:protein transport
Chain: A: PDB Molecule:ran guanine nucleotide release factor;
PDBTitle: solution structure of human mog1
61d1v6ga2
not modelled 5.9 45
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
62d2diga1
not modelled 5.7 46
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
63d1gdva_
not modelled 5.7 33
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
64c4wwxY_
not modelled 5.6 57
PDB header:hydrolase, ligase
Chain: Y: PDB Molecule:v(d)j recombination-activating protein 2;
PDBTitle: crystal structure of the core rag1/2 recombinase

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