Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2616_(-)_2945340_2945840
DateWed Aug 7 12:50:26 BST 2019
Unique Job ID72dabf5932097cb0
SequenceVDLNALADLP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.930 Y:37.398 Z:45.256
Model (left) based on template d2ns9a1
Top template information
Fold:TBP-like
Superfamily:Bet v1-like
Family:CoxG-like
Confidence and coverage
Confidence: 55.4% Coverage: 81%
135 residues ( 81% of your sequence) have been modelled with 55.4% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2ns9a1
55.4 13
Fold:TBP-like
Superfamily:Bet v1-like
Family:CoxG-like
2c3kioB_
47.7 26
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease h2 subunit b;
PDBTitle: mouse rnase h2 complex
3d2d4ra1
36.3 8
Fold:TBP-like
Superfamily:Bet v1-like
Family:oligoketide cyclase/dehydrase-like
4d2pcsa1
28.0 5
Fold:TBP-like
Superfamily:Bet v1-like
Family:CoxG-like
5c5vodD_
23.9 19
PDB header:viral protein/immune system
Chain: D: PDB Molecule:envelope glycoprotein ul130;
PDBTitle: crystal structure of hcmv pentamer in complex with neutralizing2 antibody 9i6
6d2c9qa1
22.7 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
7c2g0qA_
20.5 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:at5g39720.1 protein;
PDBTitle: solution structure of at5g39720.1 from arabidopsis thaliana
8d1ix2a_
20.1 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
9d1xhsa_
18.9 67
Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
10d1dfca3
18.0 21
Fold:beta-Trefoil
Superfamily:Actin-crosslinking proteins
Family:Fascin
11d1jk8a2
17.1 30
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
12c6nfqC_
16.7 36
PDB header:metal binding protein
Chain: C: PDB Molecule:copc;
PDBTitle: copc from pseudomonas fluorescens
13d1es0a2
16.7 35
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
14d1s9va2
16.7 30
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
15d1iaka2
16.5 30
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
16d2p24a2
16.3 25
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
17c1ssfA_
16.1 13
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
18d1klua2
16.1 25
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
19d1vkba_
16.0 83
Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
20c3dlmA_
15.9 19
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
21d1muja2
not modelled 15.8 30
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
22c2jqvA_
not modelled 15.4 31
PDB header:structural genomics
Chain: A: PDB Molecule:aig2 protein-like;
PDBTitle: solution structure at3g28950.1 from arabidopsis thaliana
23c5icuA_
not modelled 15.3 46
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
24d1v30a_
not modelled 14.4 67
Fold:Gamma-glutamyl cyclotransferase-like
Superfamily:Gamma-glutamyl cyclotransferase-like
Family:Gamma-glutamyl cyclotransferase-like
25d1fnga2
not modelled 14.1 20
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
26c3jubA_
not modelled 13.8 83
PDB header:transferase
Chain: A: PDB Molecule:aig2-like domain-containing protein 1;
PDBTitle: human gamma-glutamylamine cyclotransferase
27d1uvqa2
not modelled 13.7 25
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
28c6amgA_
not modelled 11.4 26
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cyt p460 of nitrosomonas sp. al212
29c6o3pA_
not modelled 11.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
30c3m51P_
not modelled 11.2 50
PDB header:protein binding
Chain: P: PDB Molecule:n.plumbaginifolia h+-translocating atpase mrna;
PDBTitle: structure of the 14-3-3/pma2 complex stabilized by pyrrolidone1
31c5n1tM_
not modelled 10.5 31
PDB header:oxidoreductase
Chain: M: PDB Molecule:copc;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
32c3gqqD_
not modelled 10.2 31
PDB header:splicing
Chain: D: PDB Molecule:protein unc-119 homolog a;
PDBTitle: crystal structure of the human retinal protein 4 (unc-1192 homolog a). northeast structural genomics consortium3 target hr3066a
33c4r7kA_
not modelled 10.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein jhp0584;
PDBTitle: 1.88 angstrom resolution crystal structure of hypothetical protein2 jhp0584 from helicobacter pylori.
34c4jmqA_
not modelled 9.9 30
PDB header:viral protein
Chain: A: PDB Molecule:bacteriophage t5 distal tail protein;
PDBTitle: crystal structure of pb9: the dit of bacteriophage t5.
35d2g9ha2
not modelled 9.7 25
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
36d1ihra_
not modelled 9.5 17
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TonB
37d1sdda2
not modelled 9.5 40
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
38d2f0ca1
not modelled 9.1 24
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
39c2o1sC_
not modelled 8.9 42
PDB header:transferase
Chain: C: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from2 escherichia coli
40c2grxC_
not modelled 8.9 17
PDB header:metal transport
Chain: C: PDB Molecule:protein tonb;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
41d1zrua1
not modelled 8.6 24
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
42c2o98P_
not modelled 8.4 63
PDB header:protein binding
Chain: P: PDB Molecule:plasma membrane h+ atpase;
PDBTitle: structure of the 14-3-3 / h+-atpase plant complex
43c2mx4A_
not modelled 8.1 24
PDB header:translation,protein binding
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e-binding protein
PDBTitle: nmr structure of phosphorylated 4e-bp2
44c2qikA_
not modelled 8.0 83
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0131 protein ykqa;
PDBTitle: crystal structure of ykqa from bacillus subtilis. northeast structural2 genomics target sr631
45d1f2ri_
not modelled 8.0 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:CAD domain
46d2g3ra2
not modelled 7.6 24
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
47c2bsdC_
not modelled 7.6 23
PDB header:receptor
Chain: C: PDB Molecule:receptor binding protein;
PDBTitle: structure of lactococcal bacteriophage p2 receptor binding protein
48c2k7mA_
not modelled 7.5 43
PDB header:membrane protein
Chain: A: PDB Molecule:gap junction alpha-5 protein;
PDBTitle: structure of the connexin40 carboxyl terminal domain
49d2yt9a1
not modelled 7.5 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
50c2f0cC_
not modelled 7.3 24
PDB header:viral protein
Chain: C: PDB Molecule:phage tp901-1 orf49 (bpp);
PDBTitle: structure of the receptor binding protein (orf49, bbp) from lactophage2 tp901-1
51c2r7fA_
not modelled 7.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease ii family protein;
PDBTitle: crystal structure of ribonuclease ii family protein from deinococcus2 radiodurans, hexagonal crystal form. northeast structural genomics3 target drr63
52d1s6na_
not modelled 6.9 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
53c1xx3A_
not modelled 6.8 18
PDB header:transport protein
Chain: A: PDB Molecule:tonb protein;
PDBTitle: solution structure of escherichia coli tonb-ctd
54d2r7da2
not modelled 6.8 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RNB domain-like
55c2ysgA_
not modelled 6.7 31
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
56d2vnud4
not modelled 6.6 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RNB domain-like
57d1de3a_
not modelled 6.5 33
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Ribotoxin
58c3da0C_
not modelled 6.4 24
PDB header:viral protein
Chain: C: PDB Molecule:cleaved chimeric receptor binding protein from
PDBTitle: crystal structure of a cleaved form of a chimeric receptor binding2 protein from lactococcal phages subspecies tp901-1 and p2
59c2ysfA_
not modelled 6.2 31
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
60d1x6ma_
not modelled 6.1 36
Fold:Mss4-like
Superfamily:Mss4-like
Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa
61c2aivA_
not modelled 6.1 10
PDB header:transport protein
Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116;
PDBTitle: multiple conformations in the ligand-binding site of the yeast nuclear2 pore targeting domain of nup116p
62d1r9ja2
not modelled 6.0 36
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like PP module
63c3ke6A_
not modelled 5.9 14
PDB header:unknown function
Chain: A: PDB Molecule:protein rv1364c/mt1410;
PDBTitle: the crystal structure of the rsbu and rsbw domains of rv1364c from2 mycobacterium tuberculosis
64c3u6xF_
not modelled 5.9 24
PDB header:viral protein
Chain: F: PDB Molecule:bpp;
PDBTitle: phage tp901-1 baseplate tripod
65c3d8mA_
not modelled 5.7 24
PDB header:virus/viral protein
Chain: A: PDB Molecule:baseplate protein, receptor binding protein;
PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2
66d2gskb1
not modelled 5.6 17
Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TonB
67d1is3a_
not modelled 5.5 21
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
68c2ml7A_
not modelled 5.3 83
PDB header:unknown function
Chain: A: PDB Molecule:specific abundant protein 3;
PDBTitle: ginsentides: characterization, structure and application of a new2 class of highly stable cystine knot peptides in ginseng
69c3r4zA_
not modelled 5.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 32, n terminal;
PDBTitle: crystal structure of alpha-neoagarobiose hydrolase (alpha-nabh) in2 complex with alpha-d-galactopyranose from saccharophagus degradans 2-3 40
70c2jqmA_
not modelled 5.2 24
PDB header:transferase
Chain: A: PDB Molecule:envelope protein e;
PDBTitle: yellow fever envelope protein domain iii nmr structure2 (s288-k398)
71c2dmvA_
not modelled 5.2 31
PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch)

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