Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2620c_(-)_2947472_2947897
DateWed Aug 7 12:50:26 BST 2019
Unique Job ID0ea2b2b9550430ad
SequenceVSAGPAIEVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.294 Y:10.325 Z:11.720
Model (left) based on template d1vc2a1
Top template information
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
Confidence and coverage
Confidence: 30.0% Coverage: 6%
9 residues ( 6% of your sequence) have been modelled with 30.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vc2a1



30.0 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
2d2g82a1



26.3 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
3c5kzoA_



25.5 23
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
4c2muxA_



25.4 36
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 25;
PDBTitle: sumo2 non-covalently interacts with usp25 and downregulates its2 activity
5d1k3ta1



24.6 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
6d1ggaa1



24.1 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
7d1u8fo1



22.1 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
8d1i32a1



21.8 67
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
9d3gpdg1



21.0 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
10d1j0xo1



20.8 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
11d1hdgo1



20.2 67
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
12d2b4ro1



19.9 89
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
13d1rm4a1



19.7 44
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
14d1obfo1



19.5 56
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
15d1gado1



19.5 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
16d2pkqo1



18.2 44
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
17c1q90L_



16.6 53
PDB header:photosynthesis
Chain: L: PDB Molecule:cytochrome b6f complex subunit petl;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
18d1q90l_



16.6 53
Fold:Single transmembrane helix
Superfamily:PetL subunit of the cytochrome b6f complex
Family:PetL subunit of the cytochrome b6f complex
19d3cmco1



15.9 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
20d1dssg1



15.1 78
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
21d1uf2c1



not modelled 13.9 36
Fold:A virus capsid protein alpha-helical domain
Superfamily:A virus capsid protein alpha-helical domain
Family:Phytoreovirus capsid
22c1jb0X_



not modelled 12.7 43
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i subunit psax;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
23d1jb0x_



not modelled 12.7 43
Fold:Single transmembrane helix
Superfamily:Subunit PsaX of photosystem I reaction centre
Family:Subunit PsaX of photosystem I reaction centre
24c4fe1X_



not modelled 12.7 43
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
25c1uf2F_



not modelled 11.8 42
PDB header:virus
Chain: F: PDB Molecule:outer capsid protein p8;
PDBTitle: the atomic structure of rice dwarf virus (rdv)
26c1i32D_



not modelled 11.7 67
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
27c5jyfB_



not modelled 9.6 67
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structures of streptococcus agalactiae gbs gapdh in different2 enzymatic states
28c5ld5C_



not modelled 8.8 67
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of a bacterial dehydrogenase at 2.19 angstroms2 resolution
29c1nw3A_



not modelled 8.6 33
PDB header:transferase
Chain: A: PDB Molecule:histone methyltransferase dot1l;
PDBTitle: structure of the catalytic domain of human dot1l, a non-set domain2 nucleosomal histone methyltransferase
30d1nw3a_



not modelled 8.6 33
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
31c1u2zC_



not modelled 8.2 42
PDB header:transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79
PDBTitle: crystal structure of histone k79 methyltransferase dot1p2 from yeast
32c3thgA_



not modelled 7.6 30
PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain
33c1obfO_



not modelled 7.4 56
PDB header:glycolytic pathway
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.7 a3 resolution.
34d3b7sa1



not modelled 7.1 29
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Leukotriene A4 hydrolase C-terminal domain
35c4er3A_



not modelled 6.8 33
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79 specific;
PDBTitle: crystal structure of human dot1l in complex with inhibitor epz004777
36c3pcqX_



not modelled 6.5 39
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
37c6iz0A_



not modelled 6.3 21
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric intracellular cation channel type a;
PDBTitle: crystal structure analysis of a eukaryotic membrane protein
38c6adqP_



not modelled 6.1 23
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
39c2jsnA_



not modelled 6.1 22
PDB header:protein transport
Chain: A: PDB Molecule:trafficking protein particle complex subunit 4;
PDBTitle: solution structure of the atypical pdz-like domain of2 synbindin
40c3h9eO_



not modelled 6.0 78
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase, testis-specific;
PDBTitle: crystal structure of human sperm-specific glyceraldehyde-3-phosphate2 dehydrogenase (gapds) complex with nad and phosphate
41c6m97A_



not modelled 6.0 33
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
42d1u2za_



not modelled 5.9 42
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
43c4dwnB_



not modelled 5.4 33
PDB header:apoptosis
Chain: B: PDB Molecule:bcl10-interacting card protein;
PDBTitle: crystal structure of human bincard card
44c2y69W_



not modelled 5.3 18
PDB header:electron transport
Chain: W: PDB Molecule:cytochrome c oxidase polypeptide 7a1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
45d1v54j_



not modelled 5.2 18
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIa
Family:Mitochondrial cytochrome c oxidase subunit VIIa
46c3hjaB_



not modelled 5.2 56
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 borrelia burgdorferi

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below