Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2628_(-)_2955068_2955430
DateWed Aug 7 12:50:27 BST 2019
Unique Job IDd2d55dbe4f61ec9e
SequenceMSTQRPRHSG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.255 Y:16.701 Z:23.231
Model (left) based on template d1b24a2
Top template information
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
Confidence and coverage
Confidence: 26.8% Coverage: 14%
17 residues ( 14% of your sequence) have been modelled with 26.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1b24a2
26.8 35
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
2c4csoD_
24.6 50
PDB header:transcription
Chain: D: PDB Molecule:orfy protein, transcription factor;
PDBTitle: the structure of orfy from thermoproteus tenax
3c6dqxA_
23.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase, alpha chain;
PDBTitle: actinobacillus ureae class id ribonucleotide reductase alpha subunit
4c1v4qA_
22.1 88
PDB header:toxin
Chain: A: PDB Molecule:omega-conotoxin mviic;
PDBTitle: three-dimensional solution structure of the analogue2 peptide of omega-conotoxin mviic
5c3m1uB_
19.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase;
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution
6c6n39A_
18.3 22
PDB header:transferase
Chain: A: PDB Molecule:dephospho-coa kinase;
PDBTitle: crystal structure of an dephospho-coa kinase coae from mycobacterium2 paratuberculosis
7c3hilB_
17.8 27
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1)
8c2qkqA_
14.6 19
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-b receptor 4;
PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4
9c4ye7A_
13.1 45
PDB header:viral protein
Chain: A: PDB Molecule:orf22 similar to xcgv orf19;
PDBTitle: n-terminal domain of orf22, a cydia pomonella granulovirus envelope2 protein
10c1v85A_
13.0 31
PDB header:apoptosis
Chain: A: PDB Molecule:similar to ring finger protein 36;
PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator
11c3h8mB_
13.0 20
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 7;
PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7)
12c6fxfA_
12.7 19
PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 3;
PDBTitle: crystal structure of the sam domain of murine sly1
13c5zrzA_
12.5 15
PDB header:protein binding
Chain: A: PDB Molecule:ephrin type-a receptor 5;
PDBTitle: crystal structure of epha5/samd5 complex
14c3npfB_
11.8 30
PDB header:hydrolase
Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi;
PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution
15c1b0xA_
11.7 19
PDB header:transferase
Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase);
PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.
16d1b0xa_
11.7 19
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
17c3g7dA_
10.8 62
PDB header:biosynthetic protein
Chain: A: PDB Molecule:phpd;
PDBTitle: native phpd with cadmium atoms
18d1wiga2
10.8 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
19d1sgga_
10.8 32
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
20c5f3xB_
10.5 9
PDB header:structural protein/protein binding
Chain: B: PDB Molecule:ankyrin repeat and sam domain-containing protein 4b;
PDBTitle: crystal structure of harmonin npdz1 in complex with anks4b sam-pbm
21c4ddiB_
not modelled 10.4 21
PDB header:hydrolase/ligase
Chain: B: PDB Molecule:ubiquitin-conjugating enzyme e2 d2, ubiquitin thioesterase
PDBTitle: crystal structure of human otub1/ubch5b~ub/ub
22d1coka_
not modelled 10.4 30
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
23c5zrxB_
not modelled 9.7 27
PDB header:protein binding
Chain: B: PDB Molecule:phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2,
PDBTitle: crystal structure of epha2/ship2 complex
24c3rc8A_
not modelled 9.3 56
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial;
PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment
25c4ljyA_
not modelled 8.9 42
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-processing atp-dependent rna helicase prp5;
PDBTitle: crystal structure of rna splicing effector prp5 in complex with adp
26c2uwjG_
not modelled 8.8 37
PDB header:chaperone
Chain: G: PDB Molecule:type iii export protein pscg;
PDBTitle: structure of the heterotrimeric complex which regulates type iii2 secretion needle formation
27c2dkzA_
not modelled 8.8 20
PDB header:signaling protein
Chain: A: PDB Molecule:hypothetical protein loc64762;
PDBTitle: solution structure of the sam_pnt-domain of the2 hypothetical protein loc64762
28c2laqA_
not modelled 8.6 83
PDB header:signaling protein
Chain: A: PDB Molecule:accessory gland-specific peptide 70a;
PDBTitle: solution structure of the sex peptide from drosophila melanogaster
29c2kptA_
not modelled 8.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative secreted protein;
PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a
30c2jtvA_
not modelled 8.5 67
PDB header:structural genomics
Chain: A: PDB Molecule:protein of unknown function;
PDBTitle: solution structure of protein rpa3401, northeast structural genomics2 consortium target rpt7, ontario center for structural proteomics3 target rp3384
31c5cwwB_
not modelled 8.4 21
PDB header:transport protein
Chain: B: PDB Molecule:nucleoporin nup82;
PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex
32c2lmrA_
not modelled 8.3 40
PDB header:signaling protein
Chain: A: PDB Molecule:ankyrin repeat and sam domain-containing protein 1a;
PDBTitle: solution structure of the first sam domain of odin
33d1zbxb1
not modelled 8.3 48
Fold:ORC1-binding domain
Superfamily:ORC1-binding domain
Family:ORC1-binding domain
34c5j8yC_
not modelled 8.1 21
PDB header:nuclear protein
Chain: C: PDB Molecule:polycomb protein sfmbt;
PDBTitle: crystal structure of the scm-sam and sfmbt-sam heterodimer
35c2ke7A_
not modelled 7.8 42
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat and sterile alpha motif domain-
PDBTitle: nmr structure of the first sam domain from aida1
36d1tf5a4
not modelled 7.7 55
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
37c6a8yA_
not modelled 7.7 75
PDB header:antimicrobial protein
Chain: A: PDB Molecule:yr26_sds;
PDBTitle: yr26_sds
38c2dl0A_
not modelled 7.6 50
PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1
39c2b6gA_
not modelled 7.6 21
PDB header:rna binding protein
Chain: A: PDB Molecule:vts1p;
PDBTitle: rna recognition by the vts1 sam domain
40c5zrzB_
not modelled 7.6 27
PDB header:protein binding
Chain: B: PDB Molecule:sterile alpha motif domain-containing protein 5;
PDBTitle: crystal structure of epha5/samd5 complex
41c2eseA_
not modelled 7.5 15
PDB header:protein/rna complex
Chain: A: PDB Molecule:vts1p;
PDBTitle: structure of the sam domain of vts1p in complex with rna
42c1xtkA_
not modelled 7.3 42
PDB header:gene regulation
Chain: A: PDB Molecule:probable atp-dependent rna helicase p47;
PDBTitle: structure of decd to dead mutation of human uap56
43c1ow5A_
not modelled 7.3 40
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase ste11;
PDBTitle: nmr structure of the saccharomyces cerevisiae sam (sterile2 alpha motif) domain
44d1ow5a_
not modelled 7.3 40
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
45c4nhoA_
not modelled 7.3 58
PDB header:hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx23;
PDBTitle: structure of the spliceosomal dead-box protein prp28
46c3pbpD_
not modelled 7.3 15
PDB header:transport protein,structural protein
Chain: D: PDB Molecule:nucleoporin nup82;
PDBTitle: structure of the yeast heterotrimeric nup82-nup159-nup116 nucleoporin2 complex
47d1oh1a_
not modelled 7.1 33
Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Staphostatin
48c5supB_
not modelled 7.0 50
PDB header:hydrolase/rna
Chain: B: PDB Molecule:atp-dependent rna helicase sub2;
PDBTitle: structure of mrna export factors
49c1s2mA_
not modelled 7.0 55
PDB header:rna binding protein
Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1;
PDBTitle: crystal structure of the dead box protein dhh1p
50c3k1rB_
not modelled 6.9 27
PDB header:structural protein
Chain: B: PDB Molecule:usher syndrome type-1g protein;
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
51c2db3D_
not modelled 6.9 50
PDB header:hydrolase/rna
Chain: D: PDB Molecule:atp-dependent rna helicase vasa;
PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
52c4ct4B_
not modelled 6.7 50
PDB header:rna binding protein
Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx6;
PDBTitle: cnot1 mif4g domain - ddx6 complex
53c4w7sA_
not modelled 6.6 42
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing atp-dependent rna helicase prp28;
PDBTitle: crystal structure of the yeast dead-box splicing factor prp28 at 2.542 angstroms resolution
54d1rg6a_
not modelled 6.5 36
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
55c5lcsA_
not modelled 6.5 56
PDB header:immune system
Chain: A: PDB Molecule:gallinacin-7;
PDBTitle: nmr structure of chicken avbd7 defensin
56c3fhtA_
not modelled 6.5 50
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b;
PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna
57c4rqmC_
not modelled 6.4 21
PDB header:protein binding
Chain: C: PDB Molecule:protein bicaudal c homolog 1;
PDBTitle: crystal structure of the semet bicc1 sam domain r924e mutant
58d1t5ia_
not modelled 6.4 56
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
59c4z8vA_
not modelled 6.3 42
PDB header:protein binding
Chain: A: PDB Molecule:avrrxo1-orf1;
PDBTitle: crystal structure of avrrxo1-orf1:-orf2 complex, native.
60c3eiqD_
not modelled 6.2 67
PDB header:hydrolase/antitumor protein
Chain: D: PDB Molecule:eukaryotic initiation factor 4a-i;
PDBTitle: crystal structure of pdcd4-eif4a
61c4pxaA_
not modelled 6.1 50
PDB header:translation, rna binding protein
Chain: A: PDB Molecule:atp-dependent rna helicase ddx3x;
PDBTitle: dead-box rna helicase ddx3x cancer-associated mutant d354v
62c5zryB_
not modelled 6.0 23
PDB header:protein binding
Chain: B: PDB Molecule:ankyrin repeat and sam domain-containing protein 1a,ephrin
PDBTitle: crystal structure of epha6/odin complex
63c2eanA_
not modelled 5.9 20
PDB header:signaling protein
Chain: A: PDB Molecule:connector enhancer of kinase suppressor of ras 2;
PDBTitle: solution structure of the n-terminal sam-domain of human2 kiaa0902 protein (connector enhancer of kinase suppressor3 of ras 2)
64c3r7gB_
not modelled 5.9 78
PDB header:protein binding
Chain: B: PDB Molecule:formin-2;
PDBTitle: crystal structure of spire kind domain in complex with the tail of2 fmn2
65c2hjvB_
not modelled 5.8 55
PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent rna helicase dbpa;
PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein
66c4kbfA_
not modelled 5.7 58
PDB header:hydrolase
Chain: A: PDB Molecule:heat resistant rna dependent atpase;
PDBTitle: two different open conformations of the helicase core of the rna2 helicase hera
67c5mntD_
not modelled 5.7 31
PDB header:rna binding protein
Chain: D: PDB Molecule:a2 maturation protein;
PDBTitle: bacteriophage qbeta maturation protein
68c6c4qA_
not modelled 5.7 29
PDB header:transport protein
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: 1.16 angstrom resolution crystal structure of acyl carrier protein2 domain (residues 1-100) of polyketide synthase pks13 from3 mycobacterium tuberculosis
69c2eaoA_
not modelled 5.4 50
PDB header:signaling protein, transferase
Chain: A: PDB Molecule:ephrin type-b receptor 1;
PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112)
70c2kr5A_
not modelled 5.4 17
PDB header:transport protein
Chain: A: PDB Molecule:aflatoxin biosynthesis polyketide synthase;
PDBTitle: solution structure of an acyl carrier protein domain from fungal type2 i polyketide synthase
71c2e8nA_
not modelled 5.3 50
PDB header:transferase, signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
72d1sr2a_
not modelled 5.3 17
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Sensor-like histidine kinase YojN, C-terminal domain
73c6c4lC_
not modelled 5.3 22
PDB header:oxidoreductase
Chain: C: PDB Molecule:yersinopine dehydrogenase;
PDBTitle: yersinopine dehydrogenase (ypodh) - apo
74c4b2uA_
not modelled 5.3 80
PDB header:toxin
Chain: A: PDB Molecule:s67;
PDBTitle: s67, a spider venom toxin peptide from sicarius dolichocephalus
75c5y3tA_
not modelled 5.2 42
PDB header:ligase
Chain: A: PDB Molecule:ranbp-type and c3hc4-type zinc finger-containing protein 1;
PDBTitle: crystal structure of hetero-trimeric core of lubac: hoip double-uba2 complexed with hoil-1l ubl and sharpin ubl
76c4d25A_
not modelled 5.2 50
PDB header:hydrolase
Chain: A: PDB Molecule:bmvlg protein;
PDBTitle: crystal structure of the bombyx mori vasa helicase (e339q)2 in complex with rna and amppnp
77d3buxb3
not modelled 5.2 35
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain

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