Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2643A_(RVBD2643A)_2968420_2968842
DateWed Aug 7 12:50:29 BST 2019
Unique Job IDdd1cdbaa22ba8294
SequenceVPRSVLRRYV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.138 Y:57.771 Z:25.152
Model (left) based on template c5ns5A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase glij;
PDBTitle: cys-gly dipeptidase glij in complex with cu2+ and zn2+
Confidence and coverage
Confidence: 80.4% Coverage: 31%
43 residues ( 31% of your sequence) have been modelled with 80.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ns5A_
80.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase glij;
PDBTitle: cys-gly dipeptidase glij in complex with cu2+ and zn2+
2c3iysA_
44.1 45
PDB header:virus
Chain: A: PDB Molecule:major capsid protein vp1;
PDBTitle: homology model of avian polyomavirus asymmetric unit
3d1vpsa_
40.4 32
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
4c4fmiN_
39.7 30
PDB header:viral protein
Chain: N: PDB Molecule:vp1;
PDBTitle: merkel cell polyomavirus vp1 in complex with 3'-sialyllactosamine
5c2r18A_
37.7 17
PDB header:viral protein
Chain: A: PDB Molecule:capsid assembly protein vp3;
PDBTitle: structural insights into the multifunctional protein vp3 of2 birnaviruses
6d1sida_
36.9 30
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
7d1tg7a5
34.7 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Glycosyl hydrolases family 35 catalytic domain
8c5jknA_
34.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:protein fam63a;
PDBTitle: crystal structure of deubiquitinase mindy-1
9c4pcgD_
33.1 35
PDB header:viral protein
Chain: D: PDB Molecule:vp1;
PDBTitle: structure of human polyomavirus 6 (hpyv6) vp1 pentamer
10c4mbyB_
29.2 31
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein vp1;
PDBTitle: structure of b-lymphotropic polyomavirus vp1 in complex with 3'-2 sialyllactose
11c3bwrC_
26.8 31
PDB header:viral protein
Chain: C: PDB Molecule:capsid protein vp1;
PDBTitle: sv40 vp1 pentamer in complex with gm1 oligosaccharide
12c4fe4C_
26.8 15
PDB header:transcription
Chain: C: PDB Molecule:xylose operon regulatory protein;
PDBTitle: crystal structure of apo e. coli xylr
13c2wbnA_
26.6 15
PDB header:viral protein
Chain: A: PDB Molecule:terminase large subunit;
PDBTitle: crystal structure of the g2p (large terminase) nuclease2 domain from the bacteriophage spp1
14d1sva1_
25.6 26
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
15c5oqm1_
25.3 52
PDB header:transcription
Chain: 1: PDB Molecule:general transcription and dna repair factor iih subunit
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
16c6gym1_
24.6 52
PDB header:transcription
Chain: 1: PDB Molecule:general transcription and dna repair factor iih subunit
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
17c5oqj1_
24.6 52
PDB header:transcription
Chain: 1: PDB Molecule:rna polymerase ii transcription factor b subunit 1;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
18d1k1xa3
23.5 18
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:4-alpha-glucanotransferase, N-terminal domain
19c4u62D_
21.8 33
PDB header:viral protein
Chain: D: PDB Molecule:structural protein vp1;
PDBTitle: trichodysplasia spinulosa-associated polyomavirus (tspyv) vp1 in2 complex with 3'-sialyllactose
20c4pchE_
21.8 36
PDB header:viral protein
Chain: E: PDB Molecule:vp1;
PDBTitle: structure of human polyomavirus 7 (hpyv7) vp1 pentamer
21c3s7xC_
not modelled 21.3 36
PDB header:viral protein
Chain: C: PDB Molecule:major capsid protein vp1;
PDBTitle: unassembled washington university polyomavirus vp1 pentamer r198k2 mutant
22c4ug1A_
not modelled 20.9 29
PDB header:cell cycle
Chain: A: PDB Molecule:cell cycle protein gpsb;
PDBTitle: gpsb n-terminal domain
23c2wukD_
not modelled 20.6 29
PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
24c4ug3C_
not modelled 19.2 25
PDB header:cell cycle
Chain: C: PDB Molecule:cell cycle protein gpsb;
PDBTitle: b. subtilis gpsb n-terminal domain
25c6gqaD_
not modelled 18.2 25
PDB header:cell cycle
Chain: D: PDB Molecule:cell cycle protein gpsb;
PDBTitle: cell division regulator s. pneumoniae gpsb
26c6humN_
not modelled 17.4 28
PDB header:proton transport
Chain: N: PDB Molecule:nad(p)h-quinone oxidoreductase subunit n;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
27c5hyzA_
not modelled 15.1 10
PDB header:transcription factor
Chain: A: PDB Molecule:gras family transcription factor containing protein,
PDBTitle: crystal structure of scl7 in oryza sativa
28c1fp2A_
not modelled 14.2 13
PDB header:transferase
Chain: A: PDB Molecule:isoflavone o-methyltransferase;
PDBTitle: crystal structure analysis of isoflavone o-methyltransferase
29c4lbhA_
not modelled 13.5 16
PDB header:lyase
Chain: A: PDB Molecule:5-chloro-2-hydroxyhydroquinone dehydrochlorinase (tftg);
PDBTitle: 5-chloro-2-hydroxyhydroquinone dehydrochlorinase (tftg) from2 burkholderia phenoliruptrix ac1100: apo-form
30c6d4oA_
not modelled 13.5 6
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: eubacterium eligens beta-glucuronidase bound to an amoxapine-2 glucuronide conjugate
31c4lhdB_
not modelled 13.0 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine dehydrogenase [decarboxylating];
PDBTitle: crystal structure of synechocystis sp. pcc 6803 glycine decarboxylase2 (p-protein), holo form with pyridoxal-5'-phosphate and glycine,3 closed flexible loop
32c6o7yA_
not modelled 13.0 29
PDB header:rna binding protein
Chain: A: PDB Molecule:putative eukaryotic translation initiation factor 4e type
PDBTitle: trypanosoma cruzi eif4e5 translation initiation factor in complex with2 cap-4
33c5lnkY_
not modelled 12.8 31
PDB header:oxidoreductase
Chain: Y: PDB Molecule:mitochondrial complex i, pgiv subunit;
PDBTitle: entire ovine respiratory complex i
34c2gqcA_
not modelled 12.7 42
PDB header:hydrolase
Chain: A: PDB Molecule:rhomboid intramembrane protease;
PDBTitle: solution structure of the n-terminal domain of rhomboid intramembrane2 protease from p. aeruginosa
35d2oola2
not modelled 12.2 33
Fold:Profilin-like
Superfamily:PYP-like sensor domain (PAS domain)
Family:BphP N-terminal domain-like
36c2yufA_
not modelled 12.0 35
PDB header:transcription
Chain: A: PDB Molecule:ngfi-a-binding protein 1;
PDBTitle: solution structure of the ncd2 domain in human2 transcriptional repressor nab1 protein
37d1cw0a_
not modelled 12.0 28
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
38d2veaa3
not modelled 11.4 6
Fold:Profilin-like
Superfamily:PYP-like sensor domain (PAS domain)
Family:BphP N-terminal domain-like
39d2j5wa1
not modelled 11.3 57
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
40c6dlmB_
not modelled 10.5 31
PDB header:de novo protein
Chain: B: PDB Molecule:dhd127_b;
PDBTitle: dhd127
41c3nsnA_
not modelled 10.4 29
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylglucosaminidase;
PDBTitle: crystal structure of insect beta-n-acetyl-d-hexosaminidase ofhex12 complexed with tmg-chitotriomycin
42c5b3hB_
not modelled 10.1 21
PDB header:transcription
Chain: B: PDB Molecule:protein short-root;
PDBTitle: the crystal structure of the jackdaw/idd10 bound to the heterodimeric2 shr-scr complex
43d1j5ya2
not modelled 9.9 29
Fold:HPr-like
Superfamily:Putative transcriptional regulator TM1602, C-terminal domain
Family:Putative transcriptional regulator TM1602, C-terminal domain
44d1vsra_
not modelled 9.8 28
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
45d2j5wa3
not modelled 9.1 31
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
46d3c2wa3
not modelled 9.0 36
Fold:Profilin-like
Superfamily:PYP-like sensor domain (PAS domain)
Family:BphP N-terminal domain-like
47c1yf5L_
not modelled 8.5 28
PDB header:transport protein
Chain: L: PDB Molecule:general secretion pathway protein l;
PDBTitle: cyto-epsl: the cytoplasmic domain of epsl, an inner membrane component2 of the type ii secretion system of vibrio cholerae
48c2i56A_
not modelled 8.2 21
PDB header:isomerase, metal-binding protein
Chain: A: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose
49d1uzxa_
not modelled 8.1 57
Fold:UBC-like
Superfamily:UBC-like
Family:UEV domain
50d1rh9a1
not modelled 7.9 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
51d2vzsa5
not modelled 7.8 14
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
52d1w7ja1
not modelled 7.7 43
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
53c2ph7B_
not modelled 7.7 37
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein af_2093;
PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus
54c2ketA_
not modelled 7.7 58
PDB header:antibiotic
Chain: A: PDB Molecule:cathelicidin-6;
PDBTitle: solution structure of bmap-27
55c3ketA_
not modelled 7.4 18
PDB header:transcription/dna
Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex;
PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator
56c2k2wA_
not modelled 7.4 42
PDB header:cell cycle
Chain: A: PDB Molecule:recombination and dna repair protein;
PDBTitle: second brct domain of nbs1
57c5tkwA_
not modelled 7.4 32
PDB header:hydrolase
Chain: A: PDB Molecule:type ii secretion system protein l;
PDBTitle: 1.35 angstrom resolution crystal structure of a pullulanase-specific2 type ii secretion system integral cytoplasmic membrane protein gspl3 (n-terminal fragment; residues 1-237) from klebsiella pneumoniae.
58c4jkmB_
not modelled 7.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of clostridium perfringens beta-glucuronidase
59d1sdda1
not modelled 7.3 35
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
60d1jz8a5
not modelled 7.3 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
61c2qzcB_
not modelled 7.2 11
PDB header:lyase
Chain: B: PDB Molecule:transcriptional activator tena-1;
PDBTitle: crystal structure of a putative tena-like thiaminase (tena-1, sso2206)2 from sulfolobus solfataricus p2 at 1.50 a resolution
62c1kyzC_
not modelled 7.2 6
PDB header:transferase
Chain: C: PDB Molecule:caffeic acid 3-o-methyltransferase;
PDBTitle: crystal structure analysis of caffeic acid/5-hydroxyferulic2 acid 3/5-o-methyltransferase ferulic acid complex
63d2o9ca2
not modelled 7.0 42
Fold:Profilin-like
Superfamily:PYP-like sensor domain (PAS domain)
Family:BphP N-terminal domain-like
64d1yq2a5
not modelled 6.7 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
65c5b3hD_
not modelled 6.5 33
PDB header:transcription
Chain: D: PDB Molecule:protein scarecrow;
PDBTitle: the crystal structure of the jackdaw/idd10 bound to the heterodimeric2 shr-scr complex
66c5gslB_
not modelled 6.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:778aa long hypothetical beta-galactosidase;
PDBTitle: glycoside hydrolase a
67c4jklA_
not modelled 6.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of streptococcus agalactiae beta-glucuronidase in2 space group p21212
68d2obpa1
not modelled 6.0 60
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ReutB4095-like
69d1s1qa_
not modelled 6.0 44
Fold:UBC-like
Superfamily:UBC-like
Family:UEV domain
70c3aicC_
not modelled 5.9 28
PDB header:transferase
Chain: C: PDB Molecule:glucosyltransferase-si;
PDBTitle: crystal structure of glucansucrase from streptococcus mutans
71c1us7B_
not modelled 5.9 43
PDB header:chaperone
Chain: B: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: complex of hsp90 and p50
72d1us7b_
not modelled 5.9 43
Fold:Hsp90 co-chaperone CDC37
Superfamily:Hsp90 co-chaperone CDC37
Family:Hsp90 co-chaperone CDC37
73d1irza_
not modelled 5.8 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:GARP response regulators
74c3gwzB_
not modelled 5.6 24
PDB header:transferase
Chain: B: PDB Molecule:mmcr;
PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr
75c5gsmB_
not modelled 5.6 25
PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: glycoside hydrolase b with product
76c5jbfB_
not modelled 5.5 17
PDB header:transferase
Chain: B: PDB Molecule:inactive glucansucrase;
PDBTitle: 4,6-alpha-glucanotransferase gtfb (d1015n mutant) from lactobacillus2 reuteri 121 complexed with maltopentaose
77d1x4ka2
not modelled 5.5 67
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
78c2w7nA_
not modelled 5.5 19
PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight into2 repressor cooperation in rp4 gene regulation
79c6ecaA_
not modelled 5.5 12
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: lactobacillus rhamnosus beta-glucuronidase
80c1k1yA_
not modelled 5.5 22
PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose
81c4wwrE_
not modelled 5.5 25
PDB header:transport protein
Chain: E: PDB Molecule:large proline-rich protein bag6;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
82c2m1aA_
not modelled 5.4 43
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 rev arginine-rich motif (arm);
PDBTitle: hiv-1 rev arm peptide (residues t34-r50)
83c2fe3B_
not modelled 5.4 22
PDB header:dna binding protein
Chain: B: PDB Molecule:peroxide operon regulator;
PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch
84c5lc5W_
not modelled 5.4 17
PDB header:oxidoreductase
Chain: W: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class2
85d2je8a5
not modelled 5.4 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
86c6iv7B_
not modelled 5.3 17
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase lepi;
PDBTitle: the crystal structure of a sam-dependent enzyme from aspergillus2 flavus
87c6hvgA_
not modelled 5.2 34
PDB header:transferase
Chain: A: PDB Molecule:alternansucrase;
PDBTitle: crystal structure of truncated alternansucrase from leuconostoc2 mesenteroides nrrl b-1355
88c4phtY_
not modelled 5.2 24
PDB header:protein transport
Chain: Y: PDB Molecule:type ii secretion system protein l;
PDBTitle: atpase gspe in complex with the cytoplasmic domain of gspl from the2 vibrio vulnificus type ii secretion system
89c3gabC_
not modelled 5.1 18
PDB header:hydrolase
Chain: C: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: c-terminal domain of bacillus subtilis mutl crystal form i

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