Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2645_(-)_2970133_2970564
DateWed Aug 7 12:50:29 BST 2019
Unique Job ID18d81eba081920b0
SequenceMTTTPRQPLF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.265 Y:24.552 Z:24.335
Model (left) based on template d2bcqa2
Top template information
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
Confidence and coverage
Confidence: 41.4% Coverage: 18%
26 residues ( 18% of your sequence) have been modelled with 41.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bcqa2
41.4 27
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
2d1jmsa3
37.5 27
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
3c6j7jA_
28.8 48
PDB header:transferase
Chain: A: PDB Molecule:pseudomonas aeruginosa earp;
PDBTitle: crystal structure of pseudomonas aeruginosa earp
4d1a77a1
28.3 29
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
5d2fmpa2
27.3 50
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
6d1mc8a1
23.7 35
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
7c3qdnA_
23.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin protein;
PDBTitle: putative thioredoxin protein from salmonella typhimurium
8c5e37A_
23.2 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:ef-hand domain-containing thioredoxin;
PDBTitle: redox protein from chlamydomonas reinhardtii
9d1nhoa_
21.7 20
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
10d2vana1
20.8 53
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
11c5zvqA_
20.5 32
PDB header:recombination
Chain: A: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombination mediator protein recr
12c2in3A_
19.0 32
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative protein disulfide isomerase from2 nitrosomonas europaea
13c5ganD_
18.9 13
PDB header:transcription
Chain: D: PDB Molecule:spliceosomal protein dib1;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
14c2dj0A_
17.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2
15d2c0ga2
17.1 0
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ERP29 N domain-like
16d1b43a1
16.2 25
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
17c3fm2A_
15.3 50
PDB header:heme-binding protein
Chain: A: PDB Molecule:uncharacterized protein, distantly related to a heme
PDBTitle: crystal structure of a putative heme-binding protein (ava_4353) from2 anabaena variabilis atcc 29413 at 1.80 a resolution
18c3p2aB_
15.0 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
19d1wija_
14.7 47
Fold:LEM/SAP HeH motif
Superfamily:DNA-binding domain of EIN3-like
Family:DNA-binding domain of EIN3-like
20c2i9hA_
14.7 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin i;
PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1)
21c4euyA_
not modelled 14.7 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of thioredoxin-like protein bce_0499 from bacillus2 cereus atcc 10987
22c2l6dA_
not modelled 14.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form
23c4tq1B_
not modelled 14.6 75
PDB header:protein binding
Chain: B: PDB Molecule:tectonin beta-propeller repeat-containing protein 1;
PDBTitle: crystal structure of human atg5-tecair
24c2dbcA_
not modelled 14.6 4
PDB header:signaling protein
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structure of the thioredoxin-like domain of2 phosducin-like protein 2(pdcl2)
25c2qc7A_
not modelled 14.5 10
PDB header:chaperone
Chain: A: PDB Molecule:endoplasmic reticulum protein erp29;
PDBTitle: crystal structure of the protein-disulfide isomerase related chaperone2 erp29
26c3mhaB_
not modelled 14.3 26
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
27d1ti3a_
not modelled 14.1 32
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
28d1w6va1
not modelled 13.9 28
Fold:DUSP-like
Superfamily:DUSP-like
Family:DUSP, domain in ubiquitin-specific proteases
29d1qgva_
not modelled 12.7 10
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:spliceosomal protein U5-15Kd
30c3k8aA_
not modelled 12.5 27
PDB header:dna binding protein
Chain: A: PDB Molecule:putative primosomal replication protein;
PDBTitle: neisseria gonorrhoeae prib
31c1yvlB_
not modelled 11.9 27
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
32d1j08a1
not modelled 11.8 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
33d1vdda_
not modelled 11.8 56
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
34c1vddC_
not modelled 11.2 56
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
35c3p2aA_
not modelled 11.2 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
36c6f8sD_
not modelled 11.0 48
PDB header:toxin
Chain: D: PDB Molecule:putative killer protein;
PDBTitle: toxin-antitoxin complex grata
37c2odxA_
not modelled 10.1 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c oxidase polypeptide iv;
PDBTitle: solution structure of zn(ii)cox4
38c6i1cB_
not modelled 9.7 25
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin f2;
PDBTitle: crystal structure of chlamydomonas reinhardtii thioredoxin f2
39c3en2A_
not modelled 9.7 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable primosomal replication protein n;
PDBTitle: three-dimensional structure of the protein prib from ralstonia2 solanacearum at the resolution 2.3a. northeast structural genomics3 consortium target rsr213c.
40c6c04J_
not modelled 9.1 24
PDB header:transcription/dna
Chain: J: PDB Molecule:rna polymerase-binding protein rbpa;
PDBTitle: mtb rnap holo/rbpa/double fork dna -closed clamp
41c5kkmA_
not modelled 9.1 80
PDB header:unknown function
Chain: A: PDB Molecule:o2_contryphan_vc1 prepropeptide;
PDBTitle: con-vc11-22
42d1cuka2
not modelled 9.1 31
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
43d1q23a_
not modelled 8.9 25
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
44c3fhwB_
not modelled 8.8 29
PDB header:dna binding protein
Chain: B: PDB Molecule:primosomal replication protein n;
PDBTitle: crystal structure of the protein prib from bordetella parapertussis.2 northeast structural genomics consortium target bpr162.
45c6iblB_
not modelled 8.8 30
PDB header:immune system
Chain: B: PDB Molecule:thioredoxin 1,beta-1 adrenergic receptor;
PDBTitle: activated turkey beta1 adrenoceptor with bound agonist formoterol and2 nanobody nb80
46d1i36a1
not modelled 8.7 33
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Conserved hypothetical protein MTH1747
47d1ci4a_
not modelled 8.6 22
Fold:SAM domain-like
Superfamily:Barrier-to-autointegration factor, BAF
Family:Barrier-to-autointegration factor, BAF
48d1xfla_
not modelled 8.6 25
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
49c1ixrA_
not modelled 8.6 50
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
50d1bvsa2
not modelled 8.5 50
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
51d1ixra1
not modelled 8.4 44
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:DNA helicase RuvA subunit, middle domain
52c2n24A_
not modelled 8.3 80
PDB header:toxin
Chain: A: PDB Molecule:o2_contryphan_vc1;
PDBTitle: solution nmr structure of contryphan-vc1
53c5wxkA_
not modelled 8.3 20
PDB header:transferase
Chain: A: PDB Molecule:earp;
PDBTitle: earp bound with domain i of ef-p
54c1d8lA_
not modelled 8.2 50
PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region lacking2 domain iii
55c1kftA_
not modelled 8.1 14
PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
56d1kfta_
not modelled 8.1 14
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Excinuclease UvrC C-terminal domain
57d1f46a_
not modelled 8.0 33
Fold:TBP-like
Superfamily:Cell-division protein ZipA, C-terminal domain
Family:Cell-division protein ZipA, C-terminal domain
58c3zzxB_
not modelled 7.8 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystallographic structure of thioredoxin from litopenaeus vannamei
59c2wz9A_
not modelled 7.7 16
PDB header:protein binding
Chain: A: PDB Molecule:glutaredoxin-3;
PDBTitle: crystal structure of the thioredoxin domain of human txnl2
60c4kndA_
not modelled 7.7 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: thioredoxin from anaeromyxobacter dehalogenans.
61c1ciiA_
not modelled 7.7 43
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
62c2qsiB_
not modelled 7.6 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
63c6drmA_
not modelled 7.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:inactive ubiquitin thioesterase fam105a;
PDBTitle: otu domain of fam105a
64c2i9dC_
not modelled 7.4 6
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
65c5xknF_
not modelled 7.3 63
PDB header:transferase/signaling protein
Chain: F: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
66c5xknE_
not modelled 7.3 63
PDB header:transferase/signaling protein
Chain: E: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
67c2i4aA_
not modelled 7.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from the acidophile acetobacter aceti
68d2paja1
not modelled 7.2 30
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:SAH/MTA deaminase-like
69c2wy3B_
not modelled 7.1 39
PDB header:immune system/viral protein
Chain: B: PDB Molecule:uncharacterized protein ul16;
PDBTitle: structure of the hcmv ul16-micb complex elucidates select2 binding of a viral immunoevasin to diverse nkg2d ligands
70c2y69S_
not modelled 7.1 45
PDB header:electron transport
Chain: S: PDB Molecule:cytochrome c oxidase subunit 5b;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
71c2lrcA_
not modelled 7.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable thioredoxin;
PDBTitle: structure of thioredoxin 2 from pseudomonas aeruginosa pao1 in its2 reduced form
72d1enfa1
not modelled 7.0 67
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
73d1bxta1
not modelled 7.0 83
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
74d1ck1a1
not modelled 6.9 67
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
75c2diyA_
not modelled 6.8 17
PDB header:protein binding
Chain: A: PDB Molecule:thioredoxin-like protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-like protein 2
76d3seba1
not modelled 6.7 83
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
77d1b6aa1
not modelled 6.7 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Methionine aminopeptidase, insert domain
78c3dxbE_
not modelled 6.7 35
PDB header:splicing, transcription
Chain: E: PDB Molecule:thioredoxin n-terminally fused to puf60(uhm);
PDBTitle: structure of the uhm domain of puf60 fused to thioredoxin
79d1klud1
not modelled 6.7 67
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
80d2ifqa1
not modelled 6.5 35
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
81c4i14B_
not modelled 6.4 60
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribba;
PDBTitle: crystal structure of mtb-riba2 (rv1415)
82d2i1qa1
not modelled 6.4 20
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
83c1xbsA_
not modelled 6.4 4
PDB header:transcription, cell cycle
Chain: A: PDB Molecule:dim1-like protein;
PDBTitle: crystal structure of human dim2: a dim1-like protein
84d2bz1a1
not modelled 6.3 40
Fold:RibA-like
Superfamily:RibA-like
Family:RibA-like
85d1v54f_
not modelled 6.3 50
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Cytochrome c oxidase Subunit F
86c4rl4B_
not modelled 6.3 40
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase-2;
PDBTitle: crystal structure of gtp cyclohydrolase ii from helicobacter pylori2 26695
87c2pptA_
not modelled 6.2 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
88d1fnua1
not modelled 6.2 83
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
89d1i4pa1
not modelled 6.2 67
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
90c4ruvA_
not modelled 6.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin 2 from staphylococcus aureus nctc8325
91d1rr7a_
not modelled 6.1 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Middle operon regulator, Mor
92c1rr7A_
not modelled 6.1 30
PDB header:transcription
Chain: A: PDB Molecule:middle operon regulator;
PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu
93d1wj9a1
not modelled 6.1 42
Fold:Ferredoxin-like
Superfamily:CRISPR-associated protein
Family:CRISPR-associated protein
94c2ihmA_
not modelled 6.0 36
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
95d2aq2b1
not modelled 5.9 67
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Superantigen toxins, N-terminal domain
96c2l5lA_
not modelled 5.9 40
PDB header:transport protein
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution structure of thioredoxin from bacteroides vulgatus
97d1kf6a3
not modelled 5.9 67
Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
98c3pfnB_
not modelled 5.9 29
PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
99d1rutx2
not modelled 5.9 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain

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