Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2647_(-)_2971669_2972037
DateWed Aug 7 12:50:29 BST 2019
Unique Job ID50942d887e26bf2a
SequenceVHVCHTIADV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.497 Y:32.190 Z:25.262
Model (left) based on template c1r71B_
Top template information
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
Confidence and coverage
Confidence: 48.2% Coverage: 42%
51 residues ( 42% of your sequence) have been modelled with 48.2% confidence by the single highest scoring template.
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Warning: 58% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1r71B_
48.2 25
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
2d1r71a_
42.8 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
3c2vbzA_
34.0 16
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
4c2cfxD_
30.4 10
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
5c2dbbA_
27.6 10
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
6c1vz0B_
23.6 20
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome-partitioning protein spo0j;
PDBTitle: chromosome segregation protein spo0j from thermus thermophilus
7c1ojlD_
22.4 27
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
8d1g2ha_
21.7 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
9c1g2hA_
21.7 24
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
10c3t72o_
21.5 9
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
11c2e7xA_
20.2 16
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
12d1b25a1
18.3 32
Fold:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Superfamily:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Family:Aldehyde ferredoxin oxidoreductase, C-terminal domains
13d1aora1
18.3 47
Fold:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Superfamily:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Family:Aldehyde ferredoxin oxidoreductase, C-terminal domains
14d2p7vb1
17.6 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
15d1umqa_
17.5 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
16c1umqA_
17.5 16
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
17c2e1cA_
17.5 16
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
18c2zjtB_
16.9 64
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of dna gyrase b' domain sheds lights on the2 mechanism for t-segment navigation
19c2l4aA_
16.2 19
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
20d1ntca_
16.1 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
21d2cg4a1
not modelled 15.7 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
22c2fjrB_
not modelled 14.5 5
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
23c2gm4B_
not modelled 14.2 14
PDB header:recombination, dna
Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
24c6genS_
not modelled 13.5 36
PDB header:nuclear protein
Chain: S: PDB Molecule:vacuolar protein sorting-associated protein 71;
PDBTitle: chromatin remodeller-nucleosome complex at 4.5 a resolution.
25c4lfuA_
not modelled 13.4 20
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
26d1etxa_
not modelled 13.1 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
27c4l5eA_
not modelled 13.1 47
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
28c1i1gA_
not modelled 12.9 38
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
29c5m7nA_
not modelled 12.7 24
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
30c3qp5C_
not modelled 12.7 22
PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
31d1fipa_
not modelled 12.6 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
32d1ku3a_
not modelled 12.4 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
33d1ttya_
not modelled 11.9 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
34c2gqqB_
not modelled 11.8 19
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
35c4z3wB_
not modelled 11.7 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:benzoyl-coa reductase, putative;
PDBTitle: active site complex bambc of benzoyl coenzyme a reductase in complex2 with 1,5 dienoyl-coa
36c1b4nD_
not modelled 11.5 30
PDB header:oxidoreductase
Chain: D: PDB Molecule:formaldehyde ferredoxin oxidoreductase;
PDBTitle: formaldehyde ferredoxin oxidoreductase from pyrococcus furiosus,2 complexed with glutarate
37c3i4pA_
not modelled 11.5 16
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
38c2ia0A_
not modelled 11.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
39c1aorB_
not modelled 10.6 47
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldehyde ferredoxin oxidoreductase;
PDBTitle: structure of a hyperthermophilic tungstopterin enzyme,2 aldehyde ferredoxin oxidoreductase
40c4pcqC_
not modelled 10.1 21
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
41d1nexa1
not modelled 10.0 36
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
42c3sztB_
not modelled 10.0 18
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
43c3nuhB_
not modelled 9.7 60
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function
44d1ku7a_
not modelled 9.3 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
45c2mk6A_
not modelled 8.9 16
PDB header:gene regulation
Chain: A: PDB Molecule:adapter protein meca;
PDBTitle: structure determination of substrate binding domain of meca
46c5gn0H_
not modelled 8.7 67
PDB header:transcription
Chain: H: PDB Molecule:ww domain-containing transcription regulator protein 1;
PDBTitle: structure of taz-tead complex
47c6emwg_
not modelled 8.5 23
PDB header:chaperone
Chain: G: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: structure of s.aureus clpc in complex with meca
48c2p6tH_
not modelled 8.4 17
PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
49c2r0qF_
not modelled 8.4 26
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
50c4qccA_
not modelled 8.4 29
PDB header:structural protein, lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase, peptidyl-
PDBTitle: structure of a cube-shaped, highly porous protein cage designed by2 fusing symmetric oligomeric domains
51c3t76A_
not modelled 8.1 24
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
52c4tvxT_
not modelled 7.8 28
PDB header:
PDB COMPND:
53c3fofD_
not modelled 7.7 55
PDB header:isomerase/dna
Chain: D: PDB Molecule:dna topoisomerase 4 subunit b;
PDBTitle: structural insight into the quinolone-dna cleavage complex2 of type iia topoisomerases
54c4gdoF_
not modelled 7.6 57
PDB header:structural protein
Chain: F: PDB Molecule:plectin;
PDBTitle: structure of a fragment of the rod domain of plectin
55c3t0yA_
not modelled 7.3 29
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
56c4tmaH_
not modelled 7.1 70
PDB header:isomerase/isomerase inhibitor
Chain: H: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of gyrase bound to its inhibitor yacg
57d2cyya1
not modelled 7.0 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
58d2o7ta2
not modelled 7.0 15
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
59d1etob_
not modelled 6.5 37
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
60c4uf2A_
not modelled 6.0 43
PDB header:viral protein
Chain: A: PDB Molecule:antiapoptotic membrane protein;
PDBTitle: deerpox virus dpv022 in complex with bax bh3
61d2htja1
not modelled 5.9 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FaeA-like
62c4dhxC_
not modelled 5.8 38
PDB header:transport protein/dna binding protein
Chain: C: PDB Molecule:enhancer of yellow 2 transcription factor homolog;
PDBTitle: eny2:ganp complex
63c2cg4B_
not modelled 5.8 17
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
64c4umkA_
not modelled 5.7 15
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:probable chromosome-partitioning protein parb;
PDBTitle: the complex of spo0j and pars dna in chromosomal partition system
65c2m8gX_
not modelled 5.7 19
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
66c3e7lD_
not modelled 5.6 22
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
67c4gdoC_
not modelled 5.5 57
PDB header:structural protein
Chain: C: PDB Molecule:plectin;
PDBTitle: structure of a fragment of the rod domain of plectin
68d1i1ga1
not modelled 5.3 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
69c5zwoZ_
not modelled 5.3 75
PDB header:splicing
Chain: Z: PDB Molecule:pre-mrna leakage protein 1;
PDBTitle: cryo-em structure of the yeast b complex at average resolution of 3.92 angstrom
70c1ynmA_
not modelled 5.1 78
PDB header:hydrolase
Chain: A: PDB Molecule:r.hinp1i restriction endonuclease;
PDBTitle: crystal structure of restriction endonuclease hinp1i
71c6fkgC_
not modelled 5.1 10
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.

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