Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2652c_(-)_2975938_2976564
DateWed Aug 7 12:50:30 BST 2019
Unique Job ID991ab596b34215ac
SequenceLPSPATARPD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.367 Y:20.380 Z:40.143
Model (left) based on template c3fybA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
Confidence and coverage
Confidence: 91.2% Coverage: 24%
50 residues ( 24% of your sequence) have been modelled with 91.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fybA_
91.2 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
2c2o35A_
90.8 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein duf1244;
PDBTitle: protein of unknown function (duf1244) from sinorhizobium meliloti
3d2o35a1
90.8 16
Fold:SMc04008-like
Superfamily:SMc04008-like
Family:SMc04008-like
4c5d6aA_
64.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:predicted atpase of the abc class;
PDBTitle: 2.7 angstrom crystal structure of abc transporter atpase from vibrio2 vulnificus in complex with adenylyl-imidodiphosphate (amp-pnp)
5d16vpa_
48.0 24
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
6c6sbsB_
46.8 15
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein;
PDBTitle: ytra from sulfolobus acidocaldarius, a gntr-family transcription2 factor
7c4yiyA_
43.4 14
PDB header:rna binding protein
Chain: A: PDB Molecule:krna editing a6 specific protein;
PDBTitle: structure of mrb1590 bound to amp-pnp
8c2g3nA_
40.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of the sulfolobus solfataricus alpha-2 glucosidase mala in complex with beta-octyl-glucopyranoside
9c3neuA_
39.0 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
10c4xjnM_
34.9 28
PDB header:viral protein/rna
Chain: M: PDB Molecule:nucleocapsid;
PDBTitle: structure of the parainfluenza virus 5 nucleocapsid-rna complex: an2 insight into paramyxovirus polymerase activity
11c3qvjB_
30.2 24
PDB header:isomerase
Chain: B: PDB Molecule:putative hydantoin racemase;
PDBTitle: allantoin racemase from klebsiella pneumoniae
12c1wsuA_
26.6 13
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
13c6j52A_
26.0 18
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain-only protein;
PDBTitle: crystal structure of card-only protein in frog virus 3
14c5e4vA_
25.3 29
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein,phosphoprotein;
PDBTitle: crystal structure of measles n0-p complex
15d1chka_
25.3 12
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Chitosanase
16c5oeiA_
25.1 15
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein family upf0065:tat pathway signal;
PDBTitle: r. palustris rpa4515 with oxoadipate
17c2k29A_
23.5 20
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
18d2hs5a1
22.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
19c4r1hA_
20.7 17
PDB header:transcription regulator
Chain: A: PDB Molecule:lmo0741 protein;
PDBTitle: gntr family transcriptional regulator from listeria monocytogenes
20c2plyB_
19.5 11
PDB header:translation/rna
Chain: B: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
21c4fxeB_
not modelled 19.1 20
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
22c4q2uM_
not modelled 17.2 15
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
23d1w7pd1
not modelled 16.0 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
24c3nzpA_
not modelled 15.8 17
PDB header:lyase
Chain: A: PDB Molecule:arginine decarboxylase;
PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53
25c2gf5A_
not modelled 15.2 14
PDB header:apoptosis
Chain: A: PDB Molecule:fadd protein;
PDBTitle: structure of intact fadd (mort1)
26c5zi9B_
not modelled 14.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:cytokinin riboside 5'-monophosphate phosphoribohydrolase;
PDBTitle: crystal strcuture of type-ii log from streptomyces coelicolor a3
27c5aj3k_
not modelled 14.0 14
PDB header:ribosome
Chain: K: PDB Molecule:mitoribosomal protein us11m, mrps11;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
28c2mqbA_
not modelled 14.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:probable beta-lactamase;
PDBTitle: nmr structure of putative beta-lactamase (np_372339.1) from2 staphylococcus aureus mu50
29c2pjpA_
not modelled 13.6 13
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna
30c4odaD_
not modelled 13.5 30
PDB header:hydrolase/replication
Chain: D: PDB Molecule:dna polymerase processivity factor component a20;
PDBTitle: crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
31c4odaC_
not modelled 13.5 30
PDB header:hydrolase/replication
Chain: C: PDB Molecule:dna polymerase processivity factor component a20;
PDBTitle: crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
32c3by6C_
not modelled 13.4 9
PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
33c2lxmA_
not modelled 12.2 17
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1 homolog;
PDBTitle: lip5-chmp5
34d1eija_
not modelled 11.5 33
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
35c3zplE_
not modelled 11.5 23
PDB header:transcription/dna
Chain: E: PDB Molecule:putative marr-family transcriptional repressor;
PDBTitle: crystal structure of sco3205, a marr family transcriptional regulator2 from streptomyces coelicolor, in complex with dna
36c3n2oA_
not modelled 10.7 18
PDB header:lyase
Chain: A: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus
37c3rmiA_
not modelled 10.7 8
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase protein;
PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate
38c5kvrA_
not modelled 10.6 13
PDB header:translation
Chain: A: PDB Molecule:pyruvate dehydrogenase complex repressor;
PDBTitle: x-ray crystal structure of a fragment (1-75) of a transcriptional2 regulator pdhr from escherichia coli cft073
39d3ygsp_
not modelled 10.4 15
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
40c2rkkA_
not modelled 10.3 11
PDB header:lipid transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1;
PDBTitle: crystal structure of s.cerevisiae vta1 n-terminal domain
41d3bwga1
not modelled 9.8 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
42d1fjlb_
not modelled 9.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
43d1z0xa2
not modelled 9.4 25
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
44c1lvaA_
not modelled 9.2 13
PDB header:translation
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
45c6iqcA_
not modelled 9.1 31
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein sso0352;
PDBTitle: wild-type programmed cell death 5 protein from sulfolobus solfataricus
46c1xi4D_
not modelled 9.0 13
PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:clathrin heavy chain;
PDBTitle: clathrin d6 coat
47c2fh0A_
not modelled 8.9 30
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical 16.0 kda protein in abf2-chl12
PDBTitle: nmr ensemble of the yeast saccharomyces cerevisiae protein2 ymr074cp core region
48d1ryia1
not modelled 8.7 22
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
49c6a8yA_
not modelled 8.4 67
PDB header:antimicrobial protein
Chain: A: PDB Molecule:yr26_sds;
PDBTitle: yr26_sds
50d2cg4a1
not modelled 8.4 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
51c3bwgA_
not modelled 8.2 14
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk;
PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168
52d2crua1
not modelled 8.2 31
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
53c6jx3B_
not modelled 8.2 15
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
54c2z3xC_
not modelled 8.1 28
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:small, acid-soluble spore protein c;
PDBTitle: structure of a protein-dna complex essential for dna protection in2 spore of bacillus species
55c2jxnA_
not modelled 7.9 31
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein ymr074c;
PDBTitle: solution structure of s. cerevisiae pdcd5-like protein ymr074cp
56c5ldeB_
not modelled 7.9 22
PDB header:viral protein
Chain: B: PDB Molecule:immunoglobulin g-binding protein g,viral flice protein;
PDBTitle: crystal structure of a vflip-ikkgamma stapled peptide dimer
57c4z2cA_
not modelled 7.6 32
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: quinolone(moxifloxacin)-dna cleavage complex of gyrase from s.2 pneumoniae
58d1cy5a_
not modelled 7.5 5
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
59c5kkoD_
not modelled 7.4 23
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterised protein;
PDBTitle: a 1.55a x-ray structure from vibrio cholerae o1 biovar el tor of a2 hypothetical protein
60c1izlM_
not modelled 7.3 27
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem ii: subunit psbc;
PDBTitle: crystal structure of photosystem ii
61d1aopa2
not modelled 7.2 10
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
62c2wl2B_
not modelled 7.0 36
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8
63c6e28D_
not modelled 7.0 17
PDB header:signaling protein
Chain: D: PDB Molecule:caspase recruitment domain-containing protein 9;
PDBTitle: the card9 card domain-swapped dimer
64d2cyya1
not modelled 6.9 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
65d1ab4a_
not modelled 6.9 36
Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
66c4o2xA_
not modelled 6.9 12
PDB header:transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, atp-dependent clp
PDBTitle: structure of a malarial protein
67c5xmeA_
not modelled 6.9 22
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor type 1-associated death
PDBTitle: solution structure of c-terminal domain of tradd
68c4rl4B_
not modelled 6.8 12
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase-2;
PDBTitle: crystal structure of gtp cyclohydrolase ii from helicobacter pylori2 26695
69c5l7aA_
not modelled 6.7 25
PDB header:dna binding protein
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: the crystal structure of the human snf5/ini1 domain
70c3ic7A_
not modelled 6.6 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron
71c4p96B_
not modelled 6.6 8
PDB header:transcription
Chain: B: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from vibrio cholerae
72d1au7a1
not modelled 6.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
73d1wh5a_
not modelled 6.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
74c2du9A_
not modelled 6.5 13
PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
75c2nz7A_
not modelled 6.5 12
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 4;
PDBTitle: crystal structure analysis of caspase-recruitment domain2 (card) of nod1
76c3t5vC_
not modelled 6.5 50
PDB header:transcription
Chain: C: PDB Molecule:26s proteasome complex subunit sem1;
PDBTitle: sac3:thp1:sem1 complex
77d1g3nc2
not modelled 6.3 100
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
78c2jrbA_
not modelled 6.2 22
PDB header:rna binding protein
Chain: A: PDB Molecule:orf 1 protein;
PDBTitle: c-terminal domain of orf1p from mouse line-1
79c2x2iB_
not modelled 6.2 33
PDB header:lyase
Chain: B: PDB Molecule:alpha-1,4-glucan lyase isozyme 1;
PDBTitle: crystal structure of the gracilariopsis lemaneiformis alpha-1,4-2 glucan lyase with acarbose
80c2nx9B_
not modelled 6.1 16
PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
81c4ovtA_
not modelled 6.0 8
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ochrobacterium anthropi (oant_3902), target efi-510153, with bound l-3 fuconate
82c3me5A_
not modelled 6.0 17
PDB header:transferase
Chain: A: PDB Molecule:cytosine-specific methyltransferase;
PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 2457t
83c4yk3B_
not modelled 6.0 30
PDB header:protein binding
Chain: B: PDB Molecule:bepe protein;
PDBTitle: crystal structure of the bid domain of bepe from bartonella henselae
84c3uifA_
not modelled 6.0 16
PDB header:transport protein
Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding
PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt
85d1o4xa1
not modelled 6.0 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
86d1s7ea1
not modelled 6.0 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
87c4napD_
not modelled 5.9 12
PDB header:transport protein
Chain: D: PDB Molecule:extracellular solute-binding protein, family 7;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio alaskensis g20 (dde_0634), target efi-510102, with3 bound d-tryptophan
88c5toiB_
not modelled 5.9 100
PDB header:viral protein
Chain: B: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the marburg virus vp35 oligomerization domain2 p4222
89c4gmqA_
not modelled 5.8 32
PDB header:ribosome-binding protein
Chain: A: PDB Molecule:putative ribosome associated protein;
PDBTitle: ribosome-binding domain of zuo1
90c2xcsD_
not modelled 5.7 26
PDB header:isomerase
Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a;
PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna
91c6q52A_
not modelled 5.6 15
PDB header:rna binding protein
Chain: A: PDB Molecule:cca-adding enzyme;
PDBTitle: structure of a psychrophilic cca-adding enzyme in complex with cmpcpp2 at room temperature in chipx microfluidic device
92c1iyjC_
not modelled 5.5 56
PDB header:gene regulation/antitumor protein
Chain: C: PDB Molecule:deleted in split hand/split foot protein 1;
PDBTitle: structure of a brca2-dss1 complex
93c5jqkA_
not modelled 5.5 9
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase, putative;
PDBTitle: the xray crystal structure of p. falciparum aminopeptidase p
94c6j4uA_
not modelled 5.5 9
PDB header:hydrolase
Chain: A: PDB Molecule:tubulinyl-tyr carboxypeptidase 1;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
95c3we3B_
not modelled 5.4 21
PDB header:dna binding protein
Chain: B: PDB Molecule:bloom syndrome protein;
PDBTitle: structure of blm rqc domain bound to an arsenate ion
96d1t3la2
not modelled 5.4 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
97d1t0hb_
not modelled 5.4 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
98d1bw5a_
not modelled 5.4 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
99c4wt3A_
not modelled 5.3 20
PDB header:chaperone
Chain: A: PDB Molecule:rubisco accumulation factor 1, isoform 2;
PDBTitle: the n-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana

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