Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2657c_(-)_2979059_2979319
DateWed Aug 7 12:50:30 BST 2019
Unique Job IDc4ccb6db4a01293a
SequenceMCAFPSPSLG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.497 Y:31.651 Z:36.196
Model (left) based on template c4j2nA_
Top template information
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
Confidence and coverage
Confidence: 99.6% Coverage: 60%
52 residues ( 60% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
83 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4j2nA_
99.6 42
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
2c4j2nB_
99.6 42
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
3c6amaO_
99.1 25
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
4c1z4hA_
99.1 10
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
5c1y6uA_
98.8 19
PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
6c2kfsA_
98.2 22
PDB header:dna-binding protein
Chain: A: PDB Molecule:conserved hypothetical regulatory protein;
PDBTitle: nmr structure of rv2175c
7c5i44E_
98.1 17
PDB header:dna binding protein/dna
Chain: E: PDB Molecule:chromosome-anchoring protein raca;
PDBTitle: structure of raca-dna complex; p21 form
8c4r24B_
98.1 18
PDB header:transcrption/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator tnra;
PDBTitle: complete dissection of b. subtilis nitrogen homeostatic circuitry
9c4r4eA_
98.0 17
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
10c3gpvA_
98.0 17
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr2 family from bacillus thuringiensis
11c2zhhA_
98.0 19
PDB header:transcription
Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr;
PDBTitle: crystal structure of soxr
12c5c8eC_
97.9 16
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:light-dependent transcriptional regulator carh;
PDBTitle: crystal structure of thermus thermophilus carh bound to2 adenosylcobalamin and a 26-bp dna segment
13c2vz4A_
97.8 23
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: the n-terminal domain of merr-like protein tipal bound to promoter dna
14d1r8ea1
97.7 14
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
15d1r8da_
97.6 13
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
16d1q06a_
97.6 17
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
17c3gp4B_
97.5 20
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes
18c3qaoA_
97.5 23
PDB header:transcription regulator
Chain: A: PDB Molecule:merr-like transcriptional regulator;
PDBTitle: the crystal structure of the n-terminal domain of a merr-like2 transcriptional regulator from listeria monocytogenes egd-e
19c3hh0C_
97.5 22
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr family from2 bacillus cereus
20c2jmlA_
97.4 18
PDB header:transcription
Chain: A: PDB Molecule:dna binding domain/transcriptional regulator;
PDBTitle: solution structure of the n-terminal domain of cara repressor
21c3ucsB_
not modelled 97.3 13
PDB header:chaperone
Chain: B: PDB Molecule:chaperone-modulator protein cbpm;
PDBTitle: crystal structure of the complex between cbpa j-domain and cbpm
22d1j9ia_
not modelled 97.3 19
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Terminase gpNU1 subunit domain
23c5af3A_
not modelled 97.3 20
PDB header:dna binding
Chain: A: PDB Molecule:vapbc49;
PDBTitle: x-ray crystal structure of rv2018 from mycobacterium tuberculosis
24c3d6zA_
not modelled 96.7 14
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator;
PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine
25c5gpeB_
not modelled 96.5 18
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, merr-family;
PDBTitle: crystal structure of the transcription regulator pbrr691 from2 ralstonia metallidurans ch34 in complex with lead(ii)
26c5crlA_
not modelled 96.0 28
PDB header:metal binding protein
Chain: A: PDB Molecule:mercuric resistance operon regulatory protein;
PDBTitle: crystal structure of the transcription activator tn501 merr in complex2 with mercury (ii)
27c4lhfA_
not modelled 95.9 20
PDB header:viral protein
Chain: A: PDB Molecule:regulatory protein cox;
PDBTitle: crystal structure of a dna binding protein from phage p2
28d1pm6a_
not modelled 95.1 22
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
29c5xqlA_
not modelled 94.7 19
PDB header:transcription
Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator;
PDBTitle: crystal structure of a pseudomonas aeruginosa transcriptional2 regulator
30d1j5ya1
not modelled 94.6 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
31d1biaa1
not modelled 94.5 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
32d2jn6a1
not modelled 94.3 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
33d1umqa_
not modelled 94.0 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
34c1umqA_
not modelled 94.0 31
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
35d1fipa_
not modelled 93.6 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
36c2rn7A_
not modelled 93.6 27
PDB header:unknown function
Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
37d1g2ha_
not modelled 93.5 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
38c1g2hA_
not modelled 93.5 12
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
39d1etxa_
not modelled 93.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
40c1u78A_
not modelled 93.0 10
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
41c6fkgC_
not modelled 93.0 19
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
42c5m7nA_
not modelled 92.5 16
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
43c2m8gX_
not modelled 92.3 28
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
44d1rh6a_
not modelled 92.3 22
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
45d1ntca_
not modelled 92.1 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
46c3eqxB_
not modelled 92.0 16
PDB header:dna binding protein
Chain: B: PDB Molecule:fic domain containing transcriptional regulator;
PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution
47c3bd1B_
not modelled 92.0 27
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
48c4l5eA_
not modelled 91.8 20
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
49c1ojlD_
not modelled 91.7 27
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
50c3e7lD_
not modelled 91.6 15
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
51d1etob_
not modelled 91.6 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
52c2ev2B_
not modelled 91.4 16
PDB header:lyase
Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5
53d2ao9a1
not modelled 90.4 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Nanomeric phage protein-like
54c6j05B_
not modelled 90.0 21
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator arsr;
PDBTitle: structures of two arsr as(iii)-responsive repressors: implications for2 the mechanism of derepression
55c4omzG_
not modelled 89.9 10
PDB header:transcription
Chain: G: PDB Molecule:nolr;
PDBTitle: crystal structure of nolr from sinorhizobium fredii
56c5wayB_
not modelled 89.9 33
PDB header:transcription
Chain: B: PDB Molecule:transcriptional activator;
PDBTitle: mgaspn protein, mga regulator from streptococcus pneumoniae
57c3jthA_
not modelled 89.8 15
PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
58d1pdnc_
not modelled 89.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
59c6j0eB_
not modelled 89.5 15
PDB header:transcription
Chain: B: PDB Molecule:arsenic responsive repressor arsr;
PDBTitle: structures of two arsr as(iii)-responsive repressors: implications for2 the mechanism of derepression
60c3ezfA_
not modelled 89.0 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:para;
PDBTitle: partition protein
61c2gm4B_
not modelled 88.9 17
PDB header:recombination, dna
Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
62c2kpjA_
not modelled 88.9 19
PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
63c3omtA_
not modelled 88.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
64c6paxA_
not modelled 88.5 21
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
65c4i2oA_
not modelled 88.5 34
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:fixk2 protein;
PDBTitle: the structure of fixk2 from bradyrhizobium japonicum
66c1j5yA_
not modelled 87.7 31
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, biotin repressor family;
PDBTitle: crystal structure of transcriptional regulator (tm1602) from2 thermotoga maritima at 2.3 a resolution
67c2oqgA_
not modelled 87.5 19
PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
68c1r22B_
not modelled 87.5 10
PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
69c3h5tA_
not modelled 87.2 23
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
70d1adra_
not modelled 87.1 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
71d1r1ua_
not modelled 87.1 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
72d2d1ha1
not modelled 87.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
73c2dg6A_
not modelled 86.9 17
PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco55502 from streptomyces coelicolor a3(2)
74d2ppxa1
not modelled 86.8 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
75c2ppxA_
not modelled 86.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
76c2fjrB_
not modelled 86.7 8
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
77c5j9iH_
not modelled 86.7 15
PDB header:antitoxin
Chain: H: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higa2 antitoxin c-terminal domain
78d1jhfa1
not modelled 86.6 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
79d1y9qa1
not modelled 86.6 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
80c2ebyA_
not modelled 86.6 32
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
81c3t76A_
not modelled 86.6 15
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
82c5fgmA_
not modelled 86.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigr;
PDBTitle: streptomyces coelicolor sigr region 4
83c2xcjB_
not modelled 86.6 11
PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
84d1r1ta_
not modelled 86.5 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
85d1rzsa_
not modelled 86.4 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
86c3bs3A_
not modelled 86.4 15
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
87c4r6iA_
not modelled 86.3 41
PDB header:transcription
Chain: A: PDB Molecule:anthrax toxin expression trans-acting positive regulator;
PDBTitle: atxa protein, a virulence regulator from bacillus anthracis.
88c2r0qF_
not modelled 86.1 30
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
89c2zcwA_
not modelled 86.1 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, fnr/crp family;
PDBTitle: crystal structure of ttha1359, a transcriptional regulator,2 crp/fnr family from thermus thermophilus hb8
90d2coha1
not modelled 85.9 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
91c2lkpB_
not modelled 85.8 23
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, arsr family;
PDBTitle: solution structure of apo-nmtr
92d1x57a1
not modelled 85.7 7
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
93c2zkzC_
not modelled 85.5 17
PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
94c5jaaB_
not modelled 85.3 14
PDB header:toxin
Chain: B: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higba2 toxin-antitoxin complex
95d1r69a_
not modelled 84.7 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
96d2bjca1
not modelled 84.6 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
97c2o8xA_
not modelled 84.6 21
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
98c3cuoB_
not modelled 84.5 13
PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
99c3vk0B_
not modelled 84.5 11
PDB header:dna binding protein
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of hypothetical transcription factor nhtf from2 neisseria
100c2kkoB_
not modelled 84.5 19
PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
101d1xsva_
not modelled 84.4 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
102c3clcC_
not modelled 84.4 11
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
103c3iwfA_
not modelled 84.3 17
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
104c3op9A_
not modelled 84.3 26
PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
105d1uxca_
not modelled 84.3 23
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
106d1utxa_
not modelled 84.3 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
107c3pqkD_
not modelled 84.2 13
PDB header:transcription
Chain: D: PDB Molecule:biofilm growth-associated repressor;
PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa
108c3mzyA_
not modelled 84.1 18
PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
109d1y7ya1
not modelled 83.9 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
110d2icta1
not modelled 83.8 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
111d1uxda_
not modelled 83.8 22
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
112c3trbA_
not modelled 83.8 18
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
113c3hugA_
not modelled 83.8 18
PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
114d1qpza1
not modelled 83.7 32
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
115d1b0na2
not modelled 83.6 20
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
116d2r1jl1
not modelled 83.5 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
117d1mkma1
not modelled 83.5 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
118c3fmyA_
not modelled 83.2 15
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
119c4rfaA_
not modelled 83.2 22
PDB header:transcription regulator
Chain: A: PDB Molecule:lmo0740 protein;
PDBTitle: crystal structure of cyclic nucleotide-binding domain containing2 protein from listeria monocytogenes egd-e
120c2lfwA_
not modelled 83.2 18
PDB header:signaling protein
Chain: A: PDB Molecule:phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite