Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2659c_(-)_2979701_2980828
DateWed Aug 7 12:50:31 BST 2019
Unique Job ID1b2e7bbaedc25c67
SequenceVTQTGKRQRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:106.120 Y:46.566 Z:60.193
Model (left) based on template c1z1bA_
Top template information
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
Confidence and coverage
Confidence:100.0% Coverage: 87%
327 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1z1bA_
100.0 17
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
2c5jjvA_
100.0 16
PDB header:recombination
Chain: A: PDB Molecule:tyrosine recombinase xerh;
PDBTitle: crystal structure of xerh site-specific recombinase bound to2 palindromic difh substrate: post-cleavage complex
3c5vfzA_
100.0 15
PDB header:dna binding protein
Chain: A: PDB Molecule:gp33;
PDBTitle: integrase from mycobacterium phage brujita
4c6en2A_
100.0 16
PDB header:recombination
Chain: A: PDB Molecule:int protein;
PDBTitle: structure of the tn1549 transposon integrase (aa 82-397, r225k) in2 complex with a circular intermediate dna (ci6b-dna)
5c5hxyE_
100.0 18
PDB header:recombination
Chain: E: PDB Molecule:tyrosine recombinase xera;
PDBTitle: crystal structure of xera recombinase
6d1p7da_
100.0 18
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
7c1ma7A_
100.0 15
PDB header:hydrolase, ligase/dna
Chain: A: PDB Molecule:cre recombinase;
PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27
8c2a3vA_
100.0 17
PDB header:recombination
Chain: A: PDB Molecule:site-specific recombinase inti4;
PDBTitle: structural basis for broad dna-specificity in integron recombination
9c1crxA_
100.0 13
PDB header:replication/dna
Chain: A: PDB Molecule:cre recombinase;
PDBTitle: cre recombinase/dna complex reaction intermediate i
10c1a0pA_
100.0 19
PDB header:dna recombination
Chain: A: PDB Molecule:site-specific recombinase xerd;
PDBTitle: site-specific recombinase, xerd
11c3nkhB_
99.9 21
PDB header:recombination
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus
12c4a8eA_
99.9 16
PDB header:cell cycle
Chain: A: PDB Molecule:probable tyrosine recombinase xerc-like;
PDBTitle: the structure of a dimeric xer recombinase from archaea
13c5dcfA_
99.9 23
PDB header:recombination
Chain: A: PDB Molecule:tyrosine recombinase xerd,dna translocase ftsk;
PDBTitle: c-terminal domain of xerd recombinase in complex with gamma domain of2 ftsk
14c5c6kB_
99.9 20
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: bacteriophage p2 integrase catalytic domain
15d1aiha_
99.9 15
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
16d1f44a2
99.9 15
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
17d1a0pa2
99.9 22
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
18c3uxuA_
99.8 13
PDB header:recombination
Chain: A: PDB Molecule:probable integrase;
PDBTitle: the structure of the catalytic domain of the sulfolobus spindle-shaped2 viral integrase reveals an evolutionarily conserved catalytic core3 and supports a mechanism of dna cleavage in trans
19d1ae9a_
99.8 18
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
20d5crxb2
99.6 17
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
21c2kj9A_
not modelled 99.2 12
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: nmr structure of intb phage-integrase-like protein fragment2 90-199 from erwinia carotova subsp. atroseptica: northeast3 structural genomics consortium target ewr217e
22c2kkvA_
not modelled 99.2 19
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution nmr structure of an integrase domain from protein spa42882 from salmonella enterica, northeast structural genomics consortium3 target slr105h
23c2kkpA_
not modelled 99.2 21
PDB header:dna binding protein
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171).
24c2kd1A_
not modelled 99.2 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dna integration/recombination/invertion protein;
PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f
25c2kiwA_
not modelled 99.2 17
PDB header:dna binding protein
Chain: A: PDB Molecule:int protein;
PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166).
26c2kj8A_
not modelled 99.1 13
PDB header:dna binding protein
Chain: A: PDB Molecule:putative prophage cps-53 integrase;
PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2
27c2khvA_
not modelled 99.1 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b.
28c2khqA_
not modelled 99.1 19
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b
29c2kobA_
not modelled 99.1 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of clolep_01837 (fragment 61-160)2 from clostridium leptum. northeast structural genomics3 consortium target qlr8a
30c2kj5A_
not modelled 99.1 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage integrase;
PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein nmul_a0064 from nitrosospira multiformis, northeast3 structural genomics consortium target nmr46c
31c2oxoA_
not modelled 99.1 22
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase
32c3lysC_
not modelled 99.0 14
PDB header:recombination
Chain: C: PDB Molecule:prophage pi2 protein 01, integrase;
PDBTitle: crystal structure of the n-terminal domain of the prophage pi2 protein2 01 (integrase) from lactococcus lactis, northeast structural genomics3 consortium target kr124f
33c3nrwA_
not modelled 98.7 15
PDB header:recombination
Chain: A: PDB Molecule:phage integrase/site-specific recombinase;
PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a
34c2keyA_
not modelled 98.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative phage integrase;
PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein bf2284 from bacteroides fragilis, northeast structural3 genomics consortium target bfr257c
35c3ju0A_
not modelled 98.1 16
PDB header:dna binding protein
Chain: A: PDB Molecule:phage integrase;
PDBTitle: structure of the arm-type binding domain of hai7 integrase
36d1a0pa1
not modelled 97.5 12
Fold:SAM domain-like
Superfamily:lambda integrase-like, N-terminal domain
Family:lambda integrase-like, N-terminal domain
37c3jtzA_
not modelled 97.3 16
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: structure of the arm-type binding domain of hpi integrase
38c2v6eB_
not modelled 97.2 14
PDB header:hydrolase
Chain: B: PDB Molecule:protelemorase;
PDBTitle: protelomerase telk complexed with substrate dna
39d1gcca_
not modelled 95.9 20
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:GCC-box binding domain
40d1f44a1
not modelled 94.6 12
Fold:SAM domain-like
Superfamily:lambda integrase-like, N-terminal domain
Family:lambda integrase-like, N-terminal domain
41c5wx9A_
not modelled 94.6 15
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:ethylene-responsive transcription factor erf096;
PDBTitle: crystal structure of aterf96 with gcc-box
42c4f43A_
not modelled 94.1 12
PDB header:recombination/dna
Chain: A: PDB Molecule:protelomerase;
PDBTitle: protelomerase tela mutant r255a complexed with caag hairpin dna
43c2k49A_
not modelled 92.8 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0339 protein so_3888;
PDBTitle: solution nmr structure of upf0339 protein so3888 from shewanella2 oneidensis. northeast structural genomics consortium target sor190
44c2k8eA_
not modelled 90.9 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0339 protein yegp;
PDBTitle: solution nmr structure of protein of unknown function yegp from e.2 coli. ontario center for structural proteomics target ec0640_1_1233 northeast structural genomics consortium target et102.
45d3bida1
not modelled 90.8 7
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
46d2k8ea1
not modelled 90.7 12
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
47d2k49a2
not modelled 90.0 10
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
48d2k7ia1
not modelled 89.3 19
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
49c2k7iB_
not modelled 89.3 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:upf0339 protein atu0232;
PDBTitle: solution nmr structure of protein atu0232 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att3. ontario center for structural proteomics target atc0223.
50c6q2zB_
not modelled 89.0 7
PDB header:unknown function
Chain: B: PDB Molecule:upf0339 family protein;
PDBTitle: nmr solution structure of the hvo_2922 protein from haloferax volcanii
51c2f4qA_
not modelled 84.3 15
PDB header:isomerase
Chain: A: PDB Molecule:type i topoisomerase, putative;
PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib
52d1bb8a_
not modelled 83.4 25
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:DNA-binding domain from tn916 integrase
53d2k8ea2
not modelled 77.6 5
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
54d2k49a1
not modelled 76.6 0
Fold:YegP-like
Superfamily:YegP-like
Family:YegP-like
55c2mqkA_
not modelled 63.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
56d1z1ba1
not modelled 48.7 14
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:lambda integrase N-terminal domain
57c1kjkA_
not modelled 48.7 14
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution structure of the lambda integrase amino-terminal2 domain
58c6b7qA_
not modelled 36.3 14
PDB header:cell invasion
Chain: A: PDB Molecule:sdea;
PDBTitle: crystal structure of legionella effector protein sdea (lpg2157) aa.2 211-910
59d1zj8a1
not modelled 33.7 19
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
60c2h7fX_
not modelled 30.7 24
PDB header:isomerase/dna
Chain: X: PDB Molecule:dna topoisomerase 1;
PDBTitle: structure of variola topoisomerase covalently bound to dna
61d1aopa2
not modelled 29.3 19
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
62c3igmA_
not modelled 28.6 9
PDB header:transcription/dna
Chain: A: PDB Molecule:pf14_0633 protein;
PDBTitle: a 2.2a crystal structure of the ap2 domain of pf14_0633 from p.2 falciparum, bound as a domain-swapped dimer to its cognate dna
63c2n3gA_
not modelled 28.2 16
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd1 (viz. drb4(1-72))
64d2auwa1
not modelled 27.9 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
65d2akja1
not modelled 27.5 26
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
66d1t95a3
not modelled 16.6 29
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
67d1p9qc3
not modelled 16.1 29
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
68c3sohB_
not modelled 15.2 13
PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: architecture of the flagellar rotor
69c2l8nA_
not modelled 14.4 7
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional repressor cytr;
PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
70d1nera_
not modelled 14.3 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
71c5zq2C_
not modelled 12.5 13
PDB header:cell invasion
Chain: C: PDB Molecule:side;
PDBTitle: side apo form
72c2l2nA_
not modelled 11.2 18
PDB header:rna binding protein, plant protein
Chain: A: PDB Molecule:hyponastic leave 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1
73c1rk8C_
not modelled 11.0 24
PDB header:translation
Chain: C: PDB Molecule:within the bgcn gene intron protein;
PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex
74d1rk8c_
not modelled 11.0 24
Fold:WW domain-like
Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
75c3adiC_
not modelled 10.8 19
PDB header:gene regulation/rna
Chain: C: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
76c5yimC_
not modelled 9.8 14
PDB header:transferase
Chain: C: PDB Molecule:sdea;
PDBTitle: structure of a legionella effector
77c2auwB_
not modelled 9.6 14
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
78c3vdoA_
not modelled 8.1 20
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
79c2ef8A_
not modelled 7.8 16
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
80c2lcvA_
not modelled 7.3 7
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional repressor cytr;
PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
81d1lcda_
not modelled 7.2 12
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
82d2aq0a1
not modelled 7.1 24
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
83d1ijwc_
not modelled 6.9 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
84d1hcra_
not modelled 6.9 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
85c2ltsA_
not modelled 6.7 13
PDB header:rna binding protein
Chain: A: PDB Molecule:protein rde-4;
PDBTitle: solution structure of rde-4(150-235)
86d1qpza1
not modelled 6.7 12
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
87d1rkta1
not modelled 6.4 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
88d1q08a_
not modelled 6.2 18
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
89c6d0tA_
not modelled 5.9 28
PDB header:de novo protein
Chain: A: PDB Molecule:bb1;
PDBTitle: de novo design of a fluorescence-activating beta barrel - bb1
90d1dwka1
not modelled 5.8 22
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
91c3bsuF_
not modelled 5.8 27
PDB header:hydrolase/rna/dna
Chain: F: PDB Molecule:ribonuclease h1;
PDBTitle: hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna
92d2bjca1
not modelled 5.7 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
93c5xqlA_
not modelled 5.7 8
PDB header:transcription
Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator;
PDBTitle: crystal structure of a pseudomonas aeruginosa transcriptional2 regulator
94d1s7oa_
not modelled 5.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
95d1x49a1
not modelled 5.5 14
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
96c1f8aB_
not modelled 5.3 19
PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-interacting 1;
PDBTitle: structural basis for the phosphoserine-proline recognition by group iv2 ww domains
97c4r4eA_
not modelled 5.2 22
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
98d1z0xa1
not modelled 5.2 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
99c2b9sA_
not modelled 5.2 20
PDB header:isomerase/dna
Chain: A: PDB Molecule:topoisomerase i-like protein;
PDBTitle: crystal structure of heterodimeric l. donovani topoisomerase i-2 vanadate-dna complex

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below