Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2663_(-)_2981863_2982096
DateWed Aug 7 12:50:31 BST 2019
Unique Job ID27bb8b8841c82996
SequenceVEVRASARKH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.689 Y:28.565 Z:36.990
Model (left) based on template c3u97A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease toxin brnt;
PDBTitle: 1.1 angstrom-resolution crystal structure of the brucella abortus2 ribonuclease toxin, brnt
Confidence and coverage
Confidence: 96.1% Coverage: 82%
63 residues ( 82% of your sequence) have been modelled with 96.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3u97A_



96.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease toxin brnt;
PDBTitle: 1.1 angstrom-resolution crystal structure of the brucella abortus2 ribonuclease toxin, brnt
2c3su8X_



76.3 40
PDB header:apoptosis/signaling protein
Chain: X: PDB Molecule:plexin-b1;
PDBTitle: crystal structure of a truncated intracellular domain of plexin-b1 in2 complex with rac1
3c4m8nB_



75.5 33
PDB header:signaling protein
Chain: B: PDB Molecule:plexinc1 intracellular region;
PDBTitle: crystal structure of plexinc1/rap1b complex
4c3hm6X_



74.9 40
PDB header:signaling protein
Chain: X: PDB Molecule:plexin-b1;
PDBTitle: crystal structure of the cytoplasmic domain of human plexin b1
5c5e6pA_



74.3 40
PDB header:signaling protein
Chain: A: PDB Molecule:plexin-b2;
PDBTitle: plexinb2 cytoplasmic region/pdz-rhogef pdz domain complex
6c5v6rB_



73.8 47
PDB header:protein binding
Chain: B: PDB Molecule:plexin-d1;
PDBTitle: structure of plexin d1 intracellular domain
7c3ig3A_



72.5 27
PDB header:signaling protein, membrane protein
Chain: A: PDB Molecule:plxna3 protein;
PDBTitle: crystal structure of mouse plexin a3 intracellular domain
8c3beyC_



39.3 25
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
9c1p8cD_



33.8 22
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
10c6bqzA_



30.2 24
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of tyrosine-trna synthetase from acinetobacter2 baumannii with bound l-tyrosine
11c5dipB_



28.8 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
12c3jxeB_



26.9 36
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp
13d2ouwa1



24.2 21
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
14c3gwrA_



24.1 8
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
15c2qeuA_



22.9 14
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
16d1knca_



22.3 24
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
17d1vkea_



21.6 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
18c2p7pB_



21.5 19
PDB header:metal binding protein, hydrolase
Chain: B: PDB Molecule:glyoxalase family protein;
PDBTitle: crystal structure of genomically encoded fosfomycin resistance2 protein, fosx, from listeria monocytogenes complexed with mn(ii) and3 sulfate ion
19d1vkeb_



18.6 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
20c2pidB_



17.9 26
PDB header:ligase
Chain: B: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: crystal structure of human mitochondrial tyrosyl-trna synthetase in2 complex with an adenylate analog
21d2cwqa1



not modelled 17.5 22
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
22c2oviA_



not modelled 16.9 5
PDB header:ligand binding protein, metal transport
Chain: A: PDB Molecule:hypothetical protein chux;
PDBTitle: structure of the heme binding protein chux
23c5cb9A_



not modelled 16.3 9
PDB header:lyase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: crystal structure of c-as lyase with mercaptoethonal
24c1r6uB_



not modelled 16.2 11
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity
25c2cycB_



not modelled 16.2 18
PDB header:ligase
Chain: B: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii
26c6bjuD_



not modelled 15.4 21
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
27d2rcda1



not modelled 14.7 29
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
28d2pjsa1



not modelled 14.6 30
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Antibiotic resistance proteins
29c5exvD_



not modelled 14.5 20
PDB header:heme-binding protein
Chain: D: PDB Molecule:hemin-degrading hems.chux domain protein;
PDBTitle: crystal structure of heme binding protein hutx from vibrio cholerae
30d1r6ta2



not modelled 14.3 23
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
31c2ph0A_



not modelled 14.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia carotovora.2 nesg target ewr41.
32c1r6tA_



not modelled 13.9 11
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of human tryptophanyl-trna synthetase
33c3r6aB_



not modelled 13.8 10
PDB header:isomerase, lyase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein (hypothetical protein2 mm_3218) from methanosarcina mazei.
34d1vcca_



not modelled 13.7 25
Fold:DNA topoisomerase I domain
Superfamily:DNA topoisomerase I domain
Family:Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment
35c3m2oB_



not modelled 13.7 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein;
PDBTitle: crystal structure of a putative glyoxalase/bleomycin resistance2 protein from rhodopseudomonas palustris cga009
36c4pavA_



not modelled 13.6 18
PDB header:unknown function
Chain: A: PDB Molecule:glyoxalase family protein;
PDBTitle: structure of hypothetical protein sa1046 from s. aureus.
37c5tmxA_



not modelled 12.8 22
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
38c2k53A_



not modelled 12.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:a3dk08 protein;
PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9
39d1lq1a_



not modelled 12.6 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
40d3b7ca1



not modelled 12.1 26
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
41c5z08A_



not modelled 12.0 24
PDB header:cell cycle
Chain: A: PDB Molecule:cenp-i;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
42d1jifa_



not modelled 12.0 15
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Antibiotic resistance proteins
43c3rriB_



not modelled 11.9 33
PDB header:metal binding protein
Chain: B: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: crystal structure of glyoxalase/bleomycin resistance2 protein/dioxygenase from alicyclobacillus acidocaldarius
44c3ct8A_



not modelled 11.6 33
PDB header:lyase
Chain: A: PDB Molecule:putative glyoxalase;
PDBTitle: crystal structure of a putative glyoxalase (np_243026.1) from bacillus2 halodurans at 2.10 a resolution
45d1fc3a_



not modelled 11.5 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
46c2ma3A_



not modelled 11.2 6
PDB header:replication
Chain: A: PDB Molecule:dna replication initiator (cdc21/cdc54);
PDBTitle: nmr solution structure of the c-terminus of the minichromosome2 maintenance protein mcm from methanothermobacter thermautotrophicus
47c5ig4A_



not modelled 11.1 6
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
48c3kolA_



not modelled 11.0 19
PDB header:metal binding protein
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance
PDBTitle: crystal structure of a glyoxalase/dioxygenase from nostoc2 punctiforme
49d2hqva1



not modelled 10.8 21
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:ChuX-like
50c2k5eA_



not modelled 10.8 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195
51c5ihxB_



not modelled 10.4 19
PDB header:ligase
Chain: B: PDB Molecule:tyrosine--trna ligase, mitochondrial;
PDBTitle: crystal structure of a c-terminally truncated aspergillus nidulans2 mitochondrial tyrosyl-trna synthetase
52c6iptB_



not modelled 10.4 38
PDB header:transferase
Chain: B: PDB Molecule:all3014 protein;
PDBTitle: crystal structure of a fosfomycin and bleomycin resistant protein from2 anabaena/nostoc cyanobacterium at 1.70 a resolution
53c3hzrD_



not modelled 10.3 6
PDB header:ligase
Chain: D: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica
54c3i05B_



not modelled 10.1 16
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from trypanosoma brucei
55c3w0lD_



not modelled 10.1 18
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:glucokinase regulatory protein;
PDBTitle: the crystal structure of xenopus glucokinase and glucokinase2 regulatory protein complex
56c6byqA_



not modelled 10.0 28
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of tyrosine-trna ligase from helicobacter pylori g27
57d2af7a1



not modelled 9.8 15
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
58c3g12A_



not modelled 9.6 13
PDB header:lyase
Chain: A: PDB Molecule:putative lactoylglutathione lyase;
PDBTitle: crystal structure of a putative lactoylglutathione lyase from2 bdellovibrio bacteriovorus
59c2rkjM_



not modelled 9.3 25
PDB header:ligase/rna
Chain: M: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: cocrystal structure of a tyrosyl-trna synthetase splicing factor with2 a group i intron rna
60c1yn5B_



not modelled 9.1 13
PDB header:unknown function
Chain: B: PDB Molecule:eaph2;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
61d3pvia_



not modelled 8.9 88
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease PvuII
62c6a4zA_



not modelled 8.9 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:chap protein;
PDBTitle: oxidase chap
63c2ip1A_



not modelled 8.8 20
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase
64c4oudB_



not modelled 8.8 31
PDB header:ligase
Chain: B: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: engineered tyrosyl-trna synthetase with the nonstandard amino acid l-2 4,4-biphenylalanine
65c2ts1A_



not modelled 8.8 28
PDB header:ligase (synthetase)
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms2 resolution. interaction of the enzyme with the tyrosyl adenylate3 intermediate
66d2ts1a_



not modelled 8.8 28
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
67d1xrka_



not modelled 8.7 25
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Antibiotic resistance proteins
68d2gxba1



not modelled 8.7 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
69c2n5jA_



not modelled 8.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: regnase-1 n-terminal domain
70d1qbjc_



not modelled 8.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
71c3zf7V_



not modelled 8.2 24
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l22, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
72d1h3fa1



not modelled 8.2 26
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
73d2oy9a1



not modelled 8.1 32
Fold:BH2638-like
Superfamily:BH2638-like
Family:BH2638-like
74c1h3eA_



not modelled 8.1 29
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed with wild-2 type trnatyr(gua) and with atp and tyrosinol
75d1qipa_



not modelled 8.0 30
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Glyoxalase I (lactoylglutathione lyase)
76c4ovmE_



not modelled 8.0 17
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
77c1h3oA_



not modelled 8.0 31
PDB header:transcription/tbp-associated factors
Chain: A: PDB Molecule:transcription initiation factor tfiid 135 kda subunit;
PDBTitle: crystal structure of the human taf4-taf12 (tafii135-tafii20) complex
78d1h3oa_



not modelled 8.0 31
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
79c4rt5A_



not modelled 7.9 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: the crystal structure of a glyoxalase/bleomycin resistance2 protein/dioxygenase protein from planctomyces limnophilus dsm 3776
80c2m45A_



not modelled 7.9 8
PDB header:hydrolase
Chain: A: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: nmr solution structure of the c-terminus of the minichromosome2 maintenance protein mcm from sulfolobus solfataricus
81c2kjzA_



not modelled 7.6 18
PDB header:unknown function
Chain: A: PDB Molecule:atc0852;
PDBTitle: solution nmr structure of protein atc0852 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att2.
82c6a52A_



not modelled 7.6 25
PDB header:biosynthetic protein
Chain: A: PDB Molecule:dioxidase chap-h1;
PDBTitle: oxidase chap-h1
83c1yn3A_



not modelled 7.5 25
PDB header:toxin, protein binding
Chain: A: PDB Molecule:truncated cell surface protein map-w;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
84c4bbaA_



not modelled 7.5 15
PDB header:protein-binding protein
Chain: A: PDB Molecule:glucokinase regulatory protein;
PDBTitle: crystal structure of glucokinase regulatory protein complexed to2 phosphate
85d1qgpa_



not modelled 7.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
86c1yn4A_



not modelled 7.4 13
PDB header:unknown function
Chain: A: PDB Molecule:eaph1;
PDBTitle: crystal structures of eap domains from staphylococcus2 aureus reveal an unexpected homology to bacterial3 superantigens
87c5ijxA_



not modelled 7.4 25
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase, mitochondrial;
PDBTitle: crystal structure of a c-terminally truncated coccidioides posadasii2 mitochondrial tyrosyl-trna synthetase
88c3a05A_



not modelled 7.4 22
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of tryptophanyl-trna synthetase from2 hyperthermophilic archaeon, aeropyrum pernix k1 complex3 with tryptophan
89c6otjA_



not modelled 7.3 31
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of tyrosyl-trna synthetase from neisseria2 gonorrhoeae with bound l-tyr
90d1hkxa_



not modelled 7.3 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
91d1id3b_



not modelled 7.2 9
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
92d2j0pa1



not modelled 7.0 24
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:HemS/ChuS-like
93c3r4qB_



not modelled 7.0 30
PDB header:lyase
Chain: B: PDB Molecule:lactoylglutathione lyase;
PDBTitle: crystal structure of lactoylglutathione lyase from agrobacterium2 tumefaciens
94c3ff5B_



not modelled 6.9 24
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
95c4z04A_



not modelled 6.8 40
PDB header:lyase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance /dioxygenase superfamily
PDBTitle: crystal structure of a probable lactoylglutathione lyase from brucella2 melitensis in complex with glutathione
96d1ecsa_



not modelled 6.7 50
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Antibiotic resistance proteins
97d1jx4a1



not modelled 6.7 24
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
98c3h51A_



not modelled 6.7 22
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
99c2qh0A_



not modelled 6.6 30
PDB header:lyase
Chain: A: PDB Molecule:lactoylglutathione lyase;
PDBTitle: crystal structure of a glyoxalase from clostridium acetobutylicum

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