Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2664_(-)_2982107_2982361
DateWed Aug 7 12:50:31 BST 2019
Unique Job IDa3424459122bfc11
SequenceVKHKTDIDEW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:20.706 Y:22.163 Z:19.800
Model (left) based on template c1u78A_
Top template information
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
Confidence and coverage
Confidence: 88.2% Coverage: 38%
32 residues ( 38% of your sequence) have been modelled with 88.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1u78A_
88.2 9
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
2d1s7oa_
87.7 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
3c2e7xA_
86.6 14
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
4c2ia0A_
85.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
5c1i1gA_
85.2 28
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
6c2cfxD_
84.7 10
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
7c4pcqC_
84.6 19
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
8c2vbzA_
84.5 19
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
9c2p6tH_
84.0 10
PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
10c3i4pA_
82.7 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
11c2x48B_
82.5 24
PDB header:viral protein
Chain: B: PDB Molecule:cag38821;
PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
12c2e1cA_
82.4 14
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
13d1dwka1
82.3 8
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
14c2dbbA_
82.3 29
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
15c3hugA_
81.7 19
PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
16c2cg4B_
80.9 14
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
17c3vepA_
80.7 15
PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
18c1p8cD_
80.4 12
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
19c5uk3J_
79.0 9
PDB header:lyase
Chain: J: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of cyanase from t. urticae
20c1or7A_
78.5 9
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
21c2l4aA_
not modelled 78.3 10
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
22d1xsva_
not modelled 77.6 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
23d1rp3a2
not modelled 77.0 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
24c3e7lD_
not modelled 76.9 22
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
25d1v7ba1
not modelled 76.9 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
26c3vwbA_
not modelled 76.1 20
PDB header:transcription/dna
Chain: A: PDB Molecule:virulence regulon transcriptional activator virb;
PDBTitle: crystal structure of virb core domain (se-met derivative) complexed2 with the cis-acting site (5-bru modifications) upstream icsb promoter
27c4czdD_
not modelled 75.9 15
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
28c6in7B_
not modelled 74.9 15
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: crystal structure of algu in complex with muca(cyto)
29c2iv1J_
not modelled 74.0 9
PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the catalytic2 mechanism of cyanase
30c3t72o_
not modelled 73.3 24
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
31d1vz0a1
not modelled 73.2 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
32d2cg4a1
not modelled 72.6 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
33c3rkxA_
not modelled 72.2 19
PDB header:ligase
Chain: A: PDB Molecule:biotin-[acetyl-coa-carboxylase] ligase;
PDBTitle: structural characterisation of staphylococcus aureus biotin protein2 ligase
34c1vz0B_
not modelled 71.7 18
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome-partitioning protein spo0j;
PDBTitle: chromosome segregation protein spo0j from thermus thermophilus
35c2gqqB_
not modelled 71.4 8
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
36d2vkea1
not modelled 70.9 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
37d2p7vb1
not modelled 70.5 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
38c4czdA_
not modelled 70.2 20
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
39c6fkgC_
not modelled 69.5 11
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
40d1ku3a_
not modelled 69.1 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
41c6c05F_
not modelled 68.6 33
PDB header:transcription
Chain: F: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: mycobacterium tuberculosis rnap holo/rbpa in relaxed state
42c5wurB_
not modelled 68.0 19
PDB header:metal binding protein
Chain: B: PDB Molecule:ecf rna polymerase sigma factor sigw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, an2 oxdized form
43d2cfxa1
not modelled 67.5 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
44c5zx3F_
not modelled 66.8 27
PDB header:transcription
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigh;
PDBTitle: mycobacterium tuberculosis rna polymerase holoenzyme with ecf sigma2 factor sigma h
45c5xazD_
not modelled 66.2 28
PDB header:dna binding protein
Chain: D: PDB Molecule:gamma-butyrolactone receptor protein;
PDBTitle: crystal structure of full length native tylp, a tetr regulator from2 streptomyces fradiae
46d1i1ga1
not modelled 65.6 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
47d1ku7a_
not modelled 65.6 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
48c5tw1F_
not modelled 65.2 33
PDB header:transcription activator/transferase/dna
Chain: F: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
49c5dxzA_
not modelled 65.1 23
PDB header:dna binding protein
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal of amtr from corynebacterium glutamicum
50d1ttya_
not modelled 64.7 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
51d1or7a1
not modelled 64.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
52c3npiB_
not modelled 63.4 23
PDB header:gene regulation
Chain: B: PDB Molecule:tetr family regulatory protein;
PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution
53d2cyya1
not modelled 63.0 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
54c3g7rB_
not modelled 62.9 19
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional regulator2 from streptomyces coelicolor
55c2qibA_
not modelled 62.3 19
PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
56c2qeuA_
not modelled 62.1 12
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
57c2kfsA_
not modelled 62.1 16
PDB header:dna-binding protein
Chain: A: PDB Molecule:conserved hypothetical regulatory protein;
PDBTitle: nmr structure of rv2175c
58c4ch7A_
not modelled 61.9 10
PDB header:transcription
Chain: A: PDB Molecule:nird-like protein;
PDBTitle: crystal structure of the siroheme decarboxylase nirdl
59c5ojyA_
not modelled 61.6 15
PDB header:transcription
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: co-complex structure of regulator protein 2 (pamr2) with pamamycin 6072 from streptomyces alboniger
60c5xe7A_
not modelled 60.9 25
PDB header:dna binding protein
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigj;
PDBTitle: crystal structure of mycobacterium tuberculosis extracytoplasmic2 function sigma factor sigj
61c3v6gA_
not modelled 60.6 15
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulatory protein (probably deor-
PDBTitle: crystal structure of transcriptional regulator
62c5vl9D_
not modelled 60.4 26
PDB header:transcription/dna
Chain: D: PDB Molecule:regulatory protein tetr;
PDBTitle: crystal structure of eilr in complex with eilo dna element
63c5dipB_
not modelled 60.1 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
64d1vkea_
not modelled 59.9 12
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
65c3cjdB_
not modelled 59.4 15
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of putative tetr transcriptional regulator2 (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution
66c2g7lA_
not modelled 59.3 18
PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor
67c2w7nA_
not modelled 58.6 38
PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight into2 repressor cooperation in rp4 gene regulation
68c1zx4B_
not modelled 58.2 11
PDB header:cell cycle
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
69d1k78a1
not modelled 58.0 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
70d1adra_
not modelled 57.5 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
71c2g7gA_
not modelled 57.5 14
PDB header:transcription
Chain: A: PDB Molecule:rha04620, putative transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1
72c5ipmF_
not modelled 57.3 27
PDB header:transcription, transferase/dna/rna
Chain: F: PDB Molecule:rna polymerase sigma factor rpos;
PDBTitle: sigmas-transcription initiation complex with 4-nt nascent rna
73c2llkA_
not modelled 57.2 30
PDB header:cell cycle, transcription
Chain: A: PDB Molecule:cyclin-d-binding myb-like transcription factor 1;
PDBTitle: solution nmr structure of the n-terminal myb-like 1 domain of the2 human cyclin-d-binding transcription factor 1 (hdmp1), northeast3 structural genomics consortium (nesg) target id hr8011a
74c2gfnA_
not modelled 57.0 17
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
75d1smyf2
not modelled 56.4 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
76c4pu4C_
not modelled 56.1 17
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
77c5z7iC_
not modelled 55.8 30
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra dna-binding domain(dbd)in complex with2 unmethylated dsdna
78c2qtqB_
not modelled 55.7 18
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution
79d1nr3a_
not modelled 55.1 37
Fold:DNA-binding protein Tfx
Superfamily:DNA-binding protein Tfx
Family:DNA-binding protein Tfx
80d2cwqa1
not modelled 55.1 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
81d2ouwa1
not modelled 54.4 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
82c5eybB_
not modelled 54.1 27
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna-binding protein reb1;
PDBTitle: x-ray structure of reb1-ter complex
83c5e57B_
not modelled 53.8 21
PDB header:translation
Chain: B: PDB Molecule:transcription regulator amtr;
PDBTitle: crystal structure of mycobacterium smegmatis amtr
84c2raeA_
not modelled 53.8 18
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
85c2ewnA_
not modelled 53.7 30
PDB header:ligase, transcription
Chain: A: PDB Molecule:bira bifunctional protein;
PDBTitle: ecoli biotin repressor with co-repressor analog
86c2auwB_
not modelled 53.0 21
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
87c2guhA_
not modelled 52.1 23
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
88c3vdoA_
not modelled 51.9 17
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
89c5mwrB_
not modelled 51.8 17
PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: the fadr transcription regulator from sulfolobus acidocaldarius
90c2q1zA_
not modelled 50.4 14
PDB header:transcription
Chain: A: PDB Molecule:rpoe, ecf sige;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
91c3bjbE_
not modelled 50.3 15
PDB header:transcription regulator
Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1
92c3t76A_
not modelled 49.6 9
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
93c5ydpC_
not modelled 49.5 21
PDB header:gene regulation
Chain: C: PDB Molecule:tetr transcriptional regulatory protein;
PDBTitle: crystal structure of tetr family repressor alkx from dietzia sp.2 strain dq12-45-1b implicated in biodegradation of n-alkanes
94c6paxA_
not modelled 49.3 13
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
95c5d1rA_
not modelled 48.9 19
PDB header:transcription
Chain: A: PDB Molecule:rv1816 transcriptional regulator;
PDBTitle: crystal structure of mycobacterium tuberculosis rv1816 transcriptional2 regulator.
96d1i5za1
not modelled 48.8 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
97c3b6aC_
not modelled 48.6 15
PDB header:transcription
Chain: C: PDB Molecule:actr protein;
PDBTitle: crystal structure of the streptomyces coelicolor tetr family protein2 actr in complex with actinorhodin
98c3mnlA_
not modelled 48.3 13
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulatory protein (probably tetr-family);
PDBTitle: the crystal structure of kstr (rv3574) from mycobacterium tuberculosis2 h37rv
99c1l9uH_
not modelled 48.3 29
PDB header:transcription
Chain: H: PDB Molecule:sigma factor siga;
PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution
100d2oz6a1
not modelled 48.2 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
101c6g8hC_
not modelled 48.2 23
PDB header:transcription
Chain: C: PDB Molecule:tetr/acrr family transcriptional regulator;
PDBTitle: flavonoid-responsive regulator frra in complex with naringenin
102c3mlfC_
not modelled 47.5 13
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
103c3beyC_
not modelled 47.4 12
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
104c2o38A_
not modelled 47.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
105d2o38a1
not modelled 47.4 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
106c2fd5A_
not modelled 47.3 24
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of a transcriptional regulator from pseudomonas2 aeruginosa pao1
107c3iuvA_
not modelled 47.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
108c3dcfB_
not modelled 46.5 19
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr family;
PDBTitle: crystal structure of transcriptional regulator of the tetr/acrr family2 (yp_290855.1) from thermobifida fusca yx-er1 at 2.50 a resolution
109c3mzyA_
not modelled 46.3 13
PDB header:rna binding protein
Chain: A: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
110c1bjzA_
not modelled 46.1 26
PDB header:transcription regulation
Chain: A: PDB Molecule:tetracycline repressor;
PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction
111c6dvdF_
not modelled 45.9 18
PDB header:transferase/dna
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigl;
PDBTitle: crystal structure of mycobacterium tuberculosis transcription2 initiation complex(ecf sigma factor l) with 6 nt spacer and bromine3 labelled in position "-11
112d1vkeb_
not modelled 45.5 15
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
113c2m8gX_
not modelled 44.9 18
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
114c3egqB_
not modelled 44.0 12
PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution
115c1rktA_
not modelled 44.0 17
PDB header:transcription
Chain: A: PDB Molecule:protein yfir;
PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis
116c2jvlA_
not modelled 43.9 24
PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
117c2y31A_
not modelled 43.9 21
PDB header:transcription
Chain: A: PDB Molecule:putative repressor simreg2;
PDBTitle: simocyclinone c4 bound form of tetr-like repressor simr
118c3korD_
not modelled 43.8 18
PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
119c2r0qF_
not modelled 43.7 21
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
120c5uxxC_
not modelled 43.6 17
PDB header:dna binding protein/unknown function
Chain: C: PDB Molecule:rna polymerase sigma factor;
PDBTitle: co-crystal structure of the sigma factor rpoe in complex with the2 anti-sigma factor nepr from bartonella quintana

Binding site prediction 

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