Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2665_(-)_2982709_2982990
DateWed Aug 7 12:50:31 BST 2019
Unique Job ID41417385491e61f7
SequenceMIVVRTAEAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.785 Y:24.347 Z:16.675
Model (left) based on template c4dq5B_
Top template information
PDB header:membrane protein
Chain: B: PDB Molecule:membrane protein phi6 p5wt;
PDBTitle: structural investigation of bacteriophage phi6 lysin (wt)
Confidence and coverage
Confidence: 29.4% Coverage: 18%
17 residues ( 18% of your sequence) have been modelled with 29.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4dq5B_



29.4 65
PDB header:membrane protein
Chain: B: PDB Molecule:membrane protein phi6 p5wt;
PDBTitle: structural investigation of bacteriophage phi6 lysin (wt)
2c3ifuA_



26.3 56
PDB header:transcription
Chain: A: PDB Molecule:non-structural protein;
PDBTitle: the crystal structure of porcine reproductive and respiratory syndrome2 virus (prrsv) leader protease nsp1
3d1ubdc1



14.3 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
4c5mm2B_



13.1 39
PDB header:virus
Chain: B: PDB Molecule:capsid protein vp4b;
PDBTitle: nora virus structure
5c6g4wr_



11.8 47
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
6c5cm2M_



11.1 33
PDB header:transferase
Chain: M: PDB Molecule:trna methyltransferase activator subunit;
PDBTitle: insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
7c2j6aA_



10.7 27
PDB header:transferase
Chain: A: PDB Molecule:protein trm112;
PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex.
8d1k28a1



8.2 25
Fold:OB-fold
Superfamily:gp5 N-terminal domain-like
Family:gp4 N-terminal domain-like
9d1j75a_



6.6 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
10c3a44D_



6.5 18
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
11c2kdxA_



6.1 18
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
12c2elnA_



5.9 56
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 11th c2h2 zinc finger of human2 zinc finger protein 406
13c2l69A_



5.8 42
PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x3 fold protein;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28
14c4xb6D_



5.5 35
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
15c2mjcA_



5.5 29
PDB header:metal binding protein
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit g;
PDBTitle: zn-binding domain of eukaryotic translation initiation factor 3,2 subunit g
16c3n40P_



5.5 25
PDB header:viral protein
Chain: P: PDB Molecule:p62 envelope glycoprotein;
PDBTitle: crystal structure of the immature envelope glycoprotein complex of2 chikungunya virus.
17c2lnbA_



5.4 40
PDB header:immune system
Chain: A: PDB Molecule:z-dna-binding protein 1;
PDBTitle: solution nmr structure of n-terminal domain (6-74) of human zbp12 protein, northeast structural genomics consortium target hr8174a.
18c4l3uA_



5.3 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3571 family protein (abaye3784) from2 acinetobacter baumannii aye at 1.95 a resolution
19c3hy4A_



5.2 86
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase;
PDBTitle: structure of human mthfs with n5-iminium phosphate
20c1pg5B_



5.2 28
PDB header:transferase
Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain;
PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite