Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2667_(clpC2)_2983906_2984664
DateWed Aug 7 12:50:31 BST 2019
Unique Job ID0aa257c157746310
SequenceMPEPTPTAYP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.877 Y:31.825 Z:47.520
Model (left) based on template c4xbiA_
Top template information
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein, putative,green fluorescent protein;
PDBTitle: structure of a malarial protein involved in proteostasis
Confidence and coverage
Confidence:100.0% Coverage: 56%
142 residues ( 56% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xbiA_
100.0 22
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein, putative,green fluorescent protein;
PDBTitle: structure of a malarial protein involved in proteostasis
2c4y0cB_
100.0 18
PDB header:protein binding
Chain: B: PDB Molecule:clp protease-related protein at4g12060, chloroplastic;
PDBTitle: the structure of arabidopsis clpt2
3c3fh2A_
100.0 38
PDB header:hydrolase
Chain: A: PDB Molecule:probable atp-dependent protease (heat shock protein);
PDBTitle: the crystal structure of the probable atp-dependent protease (heat2 shock protein) from corynebacterium glutamicum
4c3zriA_
100.0 14
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein;
PDBTitle: n-domain of clpv from vibrio cholerae
5c5guiA_
100.0 33
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein clpc1, chloroplastic;
PDBTitle: crystal structure of the n-terminal domain of caseinolytic protease2 associated chaperone clpc1 from arabidopsis thaliana
6c4y0bA_
100.0 17
PDB header:protein binding
Chain: A: PDB Molecule:double clp-n motif protein;
PDBTitle: the structure of arabidopsis clpt1
7c2k77A_
100.0 33
PDB header:chaperone, protein binding
Chain: A: PDB Molecule:negative regulator of genetic competence
PDBTitle: nmr solution structure of the bacillus subtilis clpc n-2 domain
8c5u2lA_
100.0 23
PDB header:protein binding
Chain: A: PDB Molecule:heat shock protein 104;
PDBTitle: crystal structure of the hsp104 n-terminal domain from candida2 albicans
9c5gkmA_
100.0 27
PDB header:chaperone
Chain: A: PDB Molecule:at5g51070/k3k7_27;
PDBTitle: crystal structure of the n-terminal domain of caseinolytic protease2 associated chaperone clpd from arabidopsis thaliana
10c4uqwA_
100.0 15
PDB header:chaperone
Chain: A: PDB Molecule:protein clpv1;
PDBTitle: coevolution of the atpase clpv, the tssb-tssc sheath and2 the accessory hsie protein distinguishes two type vi3 secretion classes
11c3fesB_
100.0 31
PDB header:atp binding protein
Chain: B: PDB Molecule:atp-dependent clp endopeptidase;
PDBTitle: crystal structure of the atp-dependent clp protease clpc from2 clostridium difficile
12d1khya_
100.0 27
Fold:Double Clp-N motif
Superfamily:Double Clp-N motif
Family:Double Clp-N motif
13d1qvra1
100.0 27
Fold:Double Clp-N motif
Superfamily:Double Clp-N motif
Family:Double Clp-N motif
14c4irfA_
100.0 19
PDB header:chaperone
Chain: A: PDB Molecule:malarial clpb2 atpase/hsp101 protein;
PDBTitle: preliminary structural investigations of a malarial protein secretion2 system
15c4hh5A_
100.0 21
PDB header:protein binding
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: n-terminal domain (1-163) of clpv1 atpase from e.coli eaec sci1 t6ss.
16c6emwX_
99.9 29
PDB header:chaperone
Chain: X: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: structure of s.aureus clpc in complex with meca
17d1k6ka_
99.9 19
Fold:Double Clp-N motif
Superfamily:Double Clp-N motif
Family:Double Clp-N motif
18c3pxgA_
99.9 32
PDB header:protein binding
Chain: A: PDB Molecule:negative regulator of genetic competence clpc/mecb;
PDBTitle: structure of meca121 and clpc1-485 complex
19c3pxiB_
99.9 33
PDB header:protein binding
Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb;
PDBTitle: structure of meca108:clpc
20c1qvrB_
99.9 24
PDB header:chaperone
Chain: B: PDB Molecule:clpb protein;
PDBTitle: crystal structure analysis of clpb
21c6azyA_
not modelled 99.9 21
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein hsp104;
PDBTitle: crystal structure of hsp104 r328m/r757m mutant from calcarisporiella2 thermophila
22c4d2qC_
not modelled 99.8 26
PDB header:chaperone
Chain: C: PDB Molecule:clpb;
PDBTitle: negative-stain electron microscopy of e. coli clpb mutant e432a (bap2 form bound to clpp)
23c5kneD_
not modelled 99.8 22
PDB header:chaperone
Chain: D: PDB Molecule:heat shock protein 104;
PDBTitle: cryoem reconstruction of hsp104 hexamer
24c5vy9C_
not modelled 99.7 21
PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein 104;
PDBTitle: s. cerevisiae hsp104:casein complex, middle domain conformation
25c6em8F_
not modelled 99.7 32
PDB header:chaperone
Chain: F: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: s.aureus clpc resting state, c2 symmetrised
26c6em8E_
not modelled 99.6 33
PDB header:chaperone
Chain: E: PDB Molecule:atp-dependent clp protease atp-binding subunit clpc;
PDBTitle: s.aureus clpc resting state, c2 symmetrised
27c1r6bX_
not modelled 99.6 19
PDB header:hydrolase
Chain: X: PDB Molecule:clpa protein;
PDBTitle: high resolution crystal structure of clpa
28d1q9ca_
not modelled 86.0 18
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
29d1id3c_
not modelled 83.3 32
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
30d1kx5c_
not modelled 82.4 32
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
31c2e7xA_
not modelled 81.7 19
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
32d1eqza_
not modelled 80.7 29
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
33c4pcqC_
not modelled 80.3 19
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
34c3i4pA_
not modelled 79.4 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
35c2f8nK_
not modelled 78.6 29
PDB header:structural protein/dna
Chain: K: PDB Molecule:histone h2a type 1;
PDBTitle: 2.9 angstrom x-ray structure of hybrid macroh2a nucleosomes
36d1s7oa_
not modelled 78.5 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
37c1i1gA_
not modelled 78.2 24
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
38c2ia0A_
not modelled 78.1 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
39c2cfxD_
not modelled 78.1 15
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
40c1u78A_
not modelled 76.9 7
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
41c2vbzA_
not modelled 76.7 27
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
42c2dbbA_
not modelled 76.7 16
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
43d1u35c1
not modelled 76.2 26
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
44d1vkea_
not modelled 76.0 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
45c2e1cA_
not modelled 76.0 24
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
46d1aoic_
not modelled 75.8 29
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
47d1kx3c_
not modelled 75.7 29
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
48c2cg4B_
not modelled 75.2 17
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
49c2p6tH_
not modelled 75.1 8
PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
50d1tzya_
not modelled 73.1 29
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
51c2qeuA_
not modelled 72.4 15
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
52c2gqqB_
not modelled 70.7 17
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
53d2cwqa1
not modelled 70.4 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
54c2jssA_
not modelled 68.3 32
PDB header:chaperone/nuclear protein
Chain: A: PDB Molecule:chimera of histone h2b.1 and histone h2a.z;
PDBTitle: nmr structure of chaperone chz1 complexed with histone2 h2a.z-h2b
55d2jssa1
not modelled 68.1 32
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
56c2l4aA_
not modelled 66.8 17
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
57d2cg4a1
not modelled 66.6 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
58c1p8cD_
not modelled 66.5 15
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
59d1rp3a2
not modelled 65.8 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
60c4czdA_
not modelled 64.8 15
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
61d1f66c_
not modelled 63.8 32
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
62c1f66C_
not modelled 63.8 32
PDB header:structural protein/dna
Chain: C: PDB Molecule:histone h2a.z;
PDBTitle: 2.6 a crystal structure of a nucleosome core particle2 containing the variant histone h2a.z
63d2huec1
not modelled 63.2 18
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
64d1xsva_
not modelled 63.0 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
65c4czdD_
not modelled 62.1 10
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
66d1hiod_
not modelled 60.9 17
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
67c3t72o_
not modelled 59.3 20
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
68d1ku3a_
not modelled 58.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
69d2p7vb1
not modelled 57.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
70c1or7A_
not modelled 55.4 23
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
71c6c05F_
not modelled 54.8 25
PDB header:transcription
Chain: F: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: mycobacterium tuberculosis rnap holo/rbpa in relaxed state
72d1ku7a_
not modelled 54.8 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
73d1ttya_
not modelled 53.7 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
74c6in7B_
not modelled 53.7 29
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: crystal structure of algu in complex with muca(cyto)
75c3vepA_
not modelled 52.2 24
PDB header:membrane protein/transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-d factor;
PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
76c5zx3F_
not modelled 51.8 19
PDB header:transcription
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigh;
PDBTitle: mycobacterium tuberculosis rna polymerase holoenzyme with ecf sigma2 factor sigma h
77d2gena1
not modelled 51.3 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
78c1vz0B_
not modelled 51.1 13
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome-partitioning protein spo0j;
PDBTitle: chromosome segregation protein spo0j from thermus thermophilus
79d1id3b_
not modelled 51.0 6
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
80d2cfxa1
not modelled 50.1 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
81c3rkxA_
not modelled 49.0 25
PDB header:ligase
Chain: A: PDB Molecule:biotin-[acetyl-coa-carboxylase] ligase;
PDBTitle: structural characterisation of staphylococcus aureus biotin protein2 ligase
82d1i1ga1
not modelled 47.9 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
83c5g49A_
not modelled 47.5 15
PDB header:transcription
Chain: A: PDB Molecule:nuclear transcription factor y subunit b-6;
PDBTitle: crystal structure of the arabodopsis thaliana histone-fold dimer l1l2 nf-yc3
84c2qvwA_
not modelled 44.8 60
PDB header:hydrolase
Chain: A: PDB Molecule:glp_546_48378_50642;
PDBTitle: structure of giardia dicer refined against twinned data
85d1or7a1
not modelled 44.7 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
86c4wzsB_
not modelled 44.5 16
PDB header:transcription
Chain: B: PDB Molecule:tata-binding protein-associated phosphoprotein;
PDBTitle: crystal structure of the mot1 n-terminal domain in complex with tbp2 and nc2 bound to a promoter dna fragment
87d1hioa_
not modelled 44.2 29
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
88c1l9uH_
not modelled 42.4 20
PDB header:transcription
Chain: H: PDB Molecule:sigma factor siga;
PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution
89c3hugA_
not modelled 42.3 24
PDB header:transcription/membrane protein
Chain: A: PDB Molecule:rna polymerase sigma factor;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
90c5lj5O_
not modelled 42.2 28
PDB header:splicing
Chain: O: PDB Molecule:pre-mrna-splicing factor cef1;
PDBTitle: overall structure of the yeast spliceosome immediately after2 branching.
91c6a7uA_
not modelled 41.8 17
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h2b type 2-e,histone h2a-bbd type 2/3;
PDBTitle: crystal structure of histone h2a.bbd-h2b dimer
92c2llkA_
not modelled 41.8 16
PDB header:cell cycle, transcription
Chain: A: PDB Molecule:cyclin-d-binding myb-like transcription factor 1;
PDBTitle: solution nmr structure of the n-terminal myb-like 1 domain of the2 human cyclin-d-binding transcription factor 1 (hdmp1), northeast3 structural genomics consortium (nesg) target id hr8011a
93d1n1jb_
not modelled 41.6 3
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
94c2w7nA_
not modelled 41.4 25
PDB header:transcription/dna
Chain: A: PDB Molecule:trfb transcriptional repressor protein;
PDBTitle: crystal structure of kora bound to operator dna: insight into2 repressor cooperation in rp4 gene regulation
95d1v7ba1
not modelled 39.9 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
96d2cyya1
not modelled 38.9 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
97c5z7iC_
not modelled 38.7 47
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra dna-binding domain(dbd)in complex with2 unmethylated dsdna
98d1kx5b_
not modelled 38.5 17
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
99d2vkea1
not modelled 38.5 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
100c5dipB_
not modelled 36.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
101c1zx4B_
not modelled 36.1 21
PDB header:cell cycle
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
102c2jvlA_
not modelled 35.9 23
PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
103c5xe7A_
not modelled 35.8 14
PDB header:dna binding protein
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigj;
PDBTitle: crystal structure of mycobacterium tuberculosis extracytoplasmic2 function sigma factor sigj
104c3vwbA_
not modelled 35.6 24
PDB header:transcription/dna
Chain: A: PDB Molecule:virulence regulon transcriptional activator virb;
PDBTitle: crystal structure of virb core domain (se-met derivative) complexed2 with the cis-acting site (5-bru modifications) upstream icsb promoter
105c2yusA_
not modelled 34.6 16
PDB header:transcription
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-
PDBTitle: solution structure of the sant domain of human swi/snf-2 related matrix-associated actin-dependent regulator of3 chromatin subfamily c member 1
106d1gv2a2
not modelled 34.5 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
107c2ewnA_
not modelled 34.4 20
PDB header:ligase, transcription
Chain: A: PDB Molecule:bira bifunctional protein;
PDBTitle: ecoli biotin repressor with co-repressor analog
108c2kfsA_
not modelled 34.3 11
PDB header:dna-binding protein
Chain: A: PDB Molecule:conserved hypothetical regulatory protein;
PDBTitle: nmr structure of rv2175c
109d1smyf2
not modelled 33.6 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
110c5eybB_
not modelled 33.2 22
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna-binding protein reb1;
PDBTitle: x-ray structure of reb1-ter complex
111c5y26B_
not modelled 32.9 9
PDB header:dna binding protein
Chain: B: PDB Molecule:putative transcription factor c16c4.22;
PDBTitle: crystal structure of native dpb4-dpb3
112d1vi0a1
not modelled 31.2 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
113c4ch7A_
not modelled 31.1 16
PDB header:transcription
Chain: A: PDB Molecule:nird-like protein;
PDBTitle: crystal structure of the siroheme decarboxylase nirdl
114c2lf3A_
not modelled 30.6 29
PDB header:signaling protein
Chain: A: PDB Molecule:effector protein hopab3;
PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a
115d1vkeb_
not modelled 30.1 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
116c5uxxC_
not modelled 30.1 23
PDB header:dna binding protein/unknown function
Chain: C: PDB Molecule:rna polymerase sigma factor;
PDBTitle: co-crystal structure of the sigma factor rpoe in complex with the2 anti-sigma factor nepr from bartonella quintana
117c2lf6A_
not modelled 27.9 26
PDB header:signaling protein
Chain: A: PDB Molecule:effector protein hopab1;
PDBTitle: solution nmr structure of hopabpph1448_220_320 from pseudomonas2 syringae pv. phaseolicola str. 1448a, midwest center for structural3 genomics target apc40132.4 and northeast structural genomics4 consortium target pst3a
118c5y26A_
not modelled 26.4 10
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase epsilon subunit d;
PDBTitle: crystal structure of native dpb4-dpb3
119c5wurB_
not modelled 26.3 14
PDB header:metal binding protein
Chain: B: PDB Molecule:ecf rna polymerase sigma factor sigw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, an2 oxdized form
120c6mzlM_
not modelled 25.6 24
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor tfiid subunit 9, taf9;
PDBTitle: human tfiid canonical state

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite