Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2674_(-)_2990716_2991126
DateWed Aug 7 12:50:32 BST 2019
Unique Job ID307a37ab7af3646d
SequenceMTRPKLELSD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.595 Y:36.062 Z:38.287
Model (left) based on template c2k8dA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
Confidence and coverage
Confidence:100.0% Coverage: 96%
130 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k8dA_
100.0 57
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
2c3cezA_
100.0 49
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase;
PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei
3c3e0mB_
100.0 41
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra/msrb
PDBTitle: crystal structure of fusion protein of msra and msrb
4d1l1da_
100.0 41
Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
5c5fa9B_
100.0 41
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: bifunctional methionine sulfoxide reductase ab (msrab) from treponema2 denticola
6c3hcjB_
100.0 46
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)
7d1xm0a1
100.0 44
Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
8c2l1uA_
100.0 47
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial;
PDBTitle: structure-functional analysis of mammalian msrb2 protein
9c2kaoA_
100.0 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1;
PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant)
10c4v30A_
94.2 33
PDB header:signaling protein
Chain: A: PDB Molecule:cereblon isoform 4;
PDBTitle: cereblon isoform 4 from magnetospirillum gryphiswaldense in2 complex with lenalidomide
11c5hj0C_
93.8 21
PDB header:ligase
Chain: C: PDB Molecule:kinetochore protein mis18;
PDBTitle: crystal structure of mis18 'yippee-like' domain
12c6b5bA_
60.8 29
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: cryo-em structure of the naip5-nlrc4-flagellin inflammasome
13d1v7mh1
43.7 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
14d1aj7h1
42.9 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
15d1gafh1
41.5 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
16d1pfta_
40.6 18
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
17d1dl6a_
40.2 18
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
18c6cceD_
37.1 18
PDB header:transcription/dna/antibiotic
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis rna polymerase2 transcription initiation complex with inhibitor kanglemycin a
19d1smyd_
36.4 33
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
20d1vera_
36.1 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
21d2raxa1
not modelled 36.0 15
Fold:Inhibitor of apoptosis (IAP) repeat
Superfamily:Inhibitor of apoptosis (IAP) repeat
Family:Inhibitor of apoptosis (IAP) repeat
22c4mngE_
not modelled 34.0 33
PDB header:immune system
Chain: E: PDB Molecule:tra@ protein,tra@ protein, ti antigen cd3-associated
PDBTitle: structure of the dp10.7 tcr with cd1d-sulfatide
23d1j8hd1
not modelled 33.8 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
24c4g7oN_
not modelled 32.5 31
PDB header:transcription, transferase/dna
Chain: N: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex containing 2 nt of rna
25d1h8ba_
not modelled 32.2 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
26c2w4rB_
not modelled 31.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:probable atp-dependent rna helicase dhx58;
PDBTitle: crystal structure of the regulatory domain of human lgp2
27c3qqcA_
not modelled 30.5 31
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna
PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain
28c3h0gI_
not modelled 30.3 18
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
29d1b88a_
not modelled 29.9 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
30d1ggbh1
not modelled 29.8 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
31d1miml1
not modelled 29.4 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
32c6oanD_
not modelled 28.6 19
PDB header:cell invasion
Chain: D: PDB Molecule:antibody 053054 single chain variable fragment;
PDBTitle: structure of dbp in complex with human neutralizing antibody 053054
33c2o5iD_
not modelled 28.6 33
PDB header:transferase/dna-rna hybrid
Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rna polymerase elongation2 complex
34c3facE_
not modelled 28.2 17
PDB header:unknown function
Chain: E: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of rhodobacter sphaeroides protein2 rsp_2168. northeast structural genomics target rhr83.
35c3w0fA_
not modelled 28.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
36c6dcfD_
not modelled 28.0 33
PDB header:transcription/dna/antibiotic
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rifampicin-resistant rna polymerase and bound3 to kanglemycin a
37d1nakh1
not modelled 27.9 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
38c5x22D_
not modelled 26.9 31
PDB header:transferase/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of thermus thermophilus transcription initiation2 complex with gpa and cmpcpp
39c3k7aM_
not modelled 26.2 21
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
40d1ynjd1
not modelled 25.7 31
Fold:beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:RNA-polymerase beta-prime
41c4c2mX_
not modelled 25.4 15
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
42c5xcqB_
not modelled 25.3 25
PDB header:immune system
Chain: B: PDB Molecule:vl-sarah(m24c) chimera;
PDBTitle: crystal structure of p20.1 fv-clasp fragment with its antigen peptide
43c3i0yC_
not modelled 25.3 12
PDB header:isomerase
Chain: C: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (xcc0381) from2 xanthomonas campestris pv. campestris at 1.50 a resolution
44d1dfbl1
not modelled 25.1 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
45c4llgJ_
not modelled 24.7 33
PDB header:transferase
Chain: J: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure analysis of the e.coli holoenzyme/gp2 complex
46c2znwB_
not modelled 24.3 10
PDB header:immune system/hydrolase
Chain: B: PDB Molecule:scfv10;
PDBTitle: crystal structure of scfv10 in complex with hen egg lysozyme
47c4wqsD_
not modelled 24.3 33
PDB header:transferase/dna/rna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: thermus thermophilus rna polymerase backtracked complex
48c1ua6H_
not modelled 24.2 10
PDB header:immune system/hydrolase
Chain: H: PDB Molecule:ig vh,anti-lysozyme;
PDBTitle: crystal structure of hyhel-10 fv mutant sfsf complexed with2 hen egg white lysozyme complex
49d2i27n1
not modelled 23.9 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
50d1jnlh1
not modelled 23.7 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
51c2zkr2_
not modelled 23.5 30
PDB header:ribosomal protein/rna
Chain: 2: PDB Molecule:60s ribosomal protein l37e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
52c4c57C_
not modelled 23.3 21
PDB header:transferase
Chain: C: PDB Molecule:nanobody;
PDBTitle: structure of gak kinase in complex with a nanobody
53c2xhqA_
not modelled 23.2 33
PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from archaeoglobus2 fulgidus at 1.45 a resolution
54c2o5jN_
not modelled 23.2 33
PDB header:transferase/dna-rna hybrid
Chain: N: PDB Molecule:dna-directed rna polymerase beta' chain;
PDBTitle: crystal structure of the t. thermophilus rnap polymerase elongation2 complex with the ntp substrate analog
55c5c6wH_
not modelled 23.1 22
PDB header:immune system
Chain: H: PDB Molecule:protein ighv1-69-2,ig lambda chain v-ii region nig-84;
PDBTitle: anti-cxcl13 scfv - e10
56c5tw1D_
not modelled 22.7 33
PDB header:transcription activator/transferase/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
57c1ic4H_
not modelled 22.4 10
PDB header:protein binding/hydrolase
Chain: H: PDB Molecule:igg1 fab chain h;
PDBTitle: crystal structure of hyhel-10 fv mutant(hd32a)-hen lysozyme2 complex
58d2dkta2
not modelled 22.4 31
Fold:Zinc hairpin stack
Superfamily:Zinc hairpin stack
Family:Zinc hairpin stack
59c1i3qI_
not modelled 22.3 14
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
60c4igcD_
not modelled 21.9 33
PDB header:transcription, transferase
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: x-ray crystal structure of escherichia coli sigma70 holoenzyme
61c1dzbB_
not modelled 21.8 22
PDB header:immune system
Chain: B: PDB Molecule:scfv fragment 1f9;
PDBTitle: crystal structure of phage library-derived single-chain fv fragment2 1f9 in complex with turkey egg-white lysozyme
62c1qokA_
not modelled 21.6 26
PDB header:immunoglobulin
Chain: A: PDB Molecule:mfe-23 recombinant antibody fragment;
PDBTitle: mfe-23 an anti-carcinoembryonic antigen single-chain fv antibody
63c1s1iY_
not modelled 21.6 38
PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l37-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
64c5yudA_
not modelled 21.4 26
PDB header:immune system
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1e;
PDBTitle: flagellin derivative in complex with the nlr protein naip5
65c2dqeH_
not modelled 21.4 10
PDB header:immune system/hydrolase
Chain: H: PDB Molecule:ig vh,anti-lysozyme;
PDBTitle: crystal structure of hyhel-10 fv mutant (hy53a) complexed2 with hen egg lysozyme
66d1q9wb1
not modelled 21.3 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
67d3dgga1
not modelled 21.3 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
68d1n7ml1
not modelled 21.2 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
69d1xx6a2
not modelled 21.1 32
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
70d1beca1
not modelled 21.1 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
71c2dqcH_
not modelled 20.9 10
PDB header:immune system/hydrolase
Chain: H: PDB Molecule:ig vh,anti-lysozyme;
PDBTitle: crystal structure of hyhel-10 fv mutant(hy33f) complexed2 with hen egg lysozyme
72c2gkiA_
not modelled 20.8 26
PDB header:immune system
Chain: A: PDB Molecule:nuclease;
PDBTitle: heavy and light chain variable single domains of an anti-dna binding2 antibody hydrolyze both double- and single-stranded dnas without3 sequence specificity
73c2jsoA_
not modelled 20.7 33
PDB header:signaling protein
Chain: A: PDB Molecule:polymyxin resistance protein pmrd;
PDBTitle: antimicrobial resistance protein
74d1w72l1
not modelled 20.7 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
75c3j3bj_
not modelled 20.5 29
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l11;
PDBTitle: structure of the human 60s ribosomal proteins
76c1nqbC_
not modelled 20.4 26
PDB header:immunoglobulin
Chain: C: PDB Molecule:single-chain antibody fragment;
PDBTitle: trivalent antibody fragment
77d1ospl1
not modelled 20.3 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
78c6ehxB_
not modelled 19.7 22
PDB header:immune system
Chain: B: PDB Molecule:scfv abvance: increasing our knowledge of antibody
PDBTitle: scfv abvance: increasing our knowledge of antibody structural space to2 enable faster and better decision making in drug discovery
79c3iydD_
not modelled 19.7 33
PDB header:transcription/dna
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
80d2oslb1
not modelled 19.2 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
81c5iy9M_
not modelled 19.1 18
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
82d1dl7h_
not modelled 19.1 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
83c5xcuA_
not modelled 19.1 8
PDB header:immune system
Chain: A: PDB Molecule:vh(s112c)-sarah chimera,vh(s112c)-sarah chimera;
PDBTitle: crystal structure of 12ca5 fv-clasp fragment with its antigen peptide
84c4f9pD_
not modelled 19.0 29
PDB header:immune system
Chain: D: PDB Molecule:103.2 anti-btn3a1 antibody fragment;
PDBTitle: crystal structure of the human btn3a1 ectodomain in complex with the2 103.2 single chain antibody
85d1nbyb1
not modelled 19.0 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
86d1ndmb1
not modelled 19.0 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
87d1bbjb1
not modelled 18.9 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
88d3c6la1
not modelled 18.9 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
89d1sm3h1
not modelled 18.9 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
90c5jvvA_
not modelled 18.7 44
PDB header:transferase
Chain: A: PDB Molecule:beta-1,3-glucosyltransferase;
PDBTitle: crystal structure and characterization an elongating gh family 162 beta-1,3-glucosyltransferase
91c4xsxJ_
not modelled 18.6 33
PDB header:transcription/antibiotic
Chain: J: PDB Molecule:dna-directed rna polymerase subunit beta';
PDBTitle: crystal structure of cbr 703 bound to escherichia coli rna polymerase2 holoenzyme
92d1q9rb1
not modelled 18.6 7
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
93d1igfl1
not modelled 18.6 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
94d1nj9b1
not modelled 18.5 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
95c2dqjH_
not modelled 18.5 10
PDB header:immune system/hydrolase
Chain: H: PDB Molecule:ig vh,anti-lysozyme;
PDBTitle: crystal structure of hyhel-10 fv (wild-type) complexed with2 hen egg lysozyme at 1.8a resolution
96c2dqiH_
not modelled 18.5 10
PDB header:immune system/hydrolase
Chain: H: PDB Molecule:ig vh,anti-lysozyme;
PDBTitle: crystal structure of hyhel-10 fv mutant (ly50a) complexed2 with hen egg lysozyme
97c1j1pH_
not modelled 18.5 10
PDB header:immune system/hydrolase
Chain: H: PDB Molecule:ig vh,anti-lysozyme;
PDBTitle: crystal structure of hyhel-10 fv mutant ls91a complexed2 with hen egg white lysozyme
98c3a6cH_
not modelled 18.5 10
PDB header:immune system/hydrolase
Chain: H: PDB Molecule:ig vh, anti-lysozyme;
PDBTitle: crystal structure of hyhel-10 fv mutant ln92d complexed with hen egg2 white lysozyme
99d1j1ph_
not modelled 18.5 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)

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