Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2680_(-)_2996115_2996747
DateWed Aug 7 12:50:33 BST 2019
Unique Job IDd4a3236a4522749d
SequenceLTSAGDDAER ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.695 Y:27.413 Z:23.870
Model (left) based on template c1zivA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:calpain 9;
PDBTitle: catalytic domain of human calpain-9
Confidence and coverage
Confidence: 45.9% Coverage: 9%
18 residues ( 9% of your sequence) have been modelled with 45.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zivA_



45.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:calpain 9;
PDBTitle: catalytic domain of human calpain-9
2d1ziva1



45.9 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Calpain large subunit, catalytic domain (domain II)
3c6bdtC_



44.5 33
PDB header:hydrolase
Chain: C: PDB Molecule:calpain-3;
PDBTitle: crystal structure of human calpain-3 protease core mutant-c129s
4d1kful3



43.4 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Calpain large subunit, catalytic domain (domain II)
5c3hlzA_



43.3 41
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bt_1490;
PDBTitle: crystal structure of bt_1490 (np_810393.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.50 a resolution
6d1mdwa_



38.3 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Calpain large subunit, catalytic domain (domain II)
7d2r9fa1



37.7 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Calpain large subunit, catalytic domain (domain II)
8d1zcma1



36.2 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Calpain large subunit, catalytic domain (domain II)
9d1qxpa4



33.1 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Calpain large subunit, catalytic domain (domain II)
10c1qxpB_



30.0 33
PDB header:hydrolase chimera
Chain: B: PDB Molecule:mu-like calpain;
PDBTitle: crystal structure of a mu-like calpain
11d1w96a1



24.9 16
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
12d1ulza1



18.9 19
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
13d2p3pa1



18.1 21
Fold:PG1388-like
Superfamily:PG1388-like
Family:PG1388-like
14c4a4kI_



17.8 20
PDB header:hydrolase
Chain: I: PDB Molecule:antiviral helicase ski2;
PDBTitle: crystal structure of the s. cerevisiae ski2 insertion domain
15d2j9ga1



15.7 16
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
16c4rcnA_



14.7 23
PDB header:ligase
Chain: A: PDB Molecule:long-chain acyl-coa carboxylase;
PDBTitle: structure and function of a single-chain, multi-domain long-chain2 acyl-coa carboxylase
17c1vkoA_



13.8 15
PDB header:isomerase
Chain: A: PDB Molecule:inositol-3-phosphate synthase;
PDBTitle: crystal structure of inositol-3-phosphate synthase (ce21227) from2 caenorhabditis elegans at 2.30 a resolution
18d2ipqx1



13.5 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:STY4665 C-terminal domain-like
19d1p1ja1



12.6 20
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
20c5civA_



11.7 19
PDB header:unknown function
Chain: A: PDB Molecule:sibling bacteriocin;
PDBTitle: sibling lethal factor precursor - dfsb
21c1p1hD_



not modelled 11.1 20
PDB header:isomerase
Chain: D: PDB Molecule:inositol-3-phosphate synthase;
PDBTitle: crystal structure of the 1l-myo-inositol/nad+ complex
22c1kfxL_



not modelled 9.5 33
PDB header:hydrolase
Chain: L: PDB Molecule:m-calpain large subunit;
PDBTitle: crystal structure of human m-calpain form i
23d1snna_



not modelled 9.3 33
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
24d1xd5a_



not modelled 9.2 18
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
25d1vkoa1



not modelled 9.0 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
26c4lqbA_



not modelled 8.7 28
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein kfla3161
27d1z1za1



not modelled 8.6 18
Fold:Phage tail protein-like
Superfamily:Phage tail protein-like
Family:Lambda phage gpU-like
28c4p6dA_



not modelled 8.4 22
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: structure of ribb complexed with po4 ion
29c3t7kB_



not modelled 8.4 40
PDB header:protein binding
Chain: B: PDB Molecule:regulator of ty1 transposition protein 107;
PDBTitle: complex structure of rtt107p and phosphorylated histone h2a
30c2advB_



not modelled 8.3 30
PDB header:hydrolase
Chain: B: PDB Molecule:glutaryl 7- aminocephalosporanic acid acylase;
PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 mutational study of activation mechanism
31d1jjcb1



not modelled 8.2 36
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
32c3u9sI_



not modelled 7.7 22
PDB header:ligase
Chain: I: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex
33c3mioA_



not modelled 7.5 17
PDB header:lyase
Chain: A: PDB Molecule:3,4-dihydroxy-2-butanone 4-phosphate synthase;
PDBTitle: crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase2 domain from mycobacterium tuberculosis at ph 6.00
34d1tksa_



not modelled 7.3 17
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
35d1k4ia_



not modelled 7.2 11
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
36c5ks8B_



not modelled 7.2 22
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase subunit alpha;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
37c3mz2A_



not modelled 7.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase;
PDBTitle: crystal structure of a glycerophosphoryl diester phosphodiesterase2 (bdi_3922) from parabacteroides distasonis atcc 8503 at 1.55 a3 resolution
38c3l2uA_



not modelled 7.2 12
PDB header:recombination/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv)2 intasome in complex with magnesium and gs91373 (elvitegravir)
39c5mlkB_



not modelled 7.2 19
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: biotin dependent carboxylase acca3 dimer from mycobacterium2 tuberculosis (rv3285)
40c3v4dC_



not modelled 7.1 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:aminoacrylate peracid reductase rutc;
PDBTitle: crystal structure of rutc protein a member of the yjgf family from2 e.coli
41c5zt3A_



not modelled 6.9 26
PDB header:plant protein
Chain: A: PDB Molecule:wa352;
PDBTitle: crystal structure of wa352 from oryza sativa
42c1ll4A_



not modelled 6.8 44
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase 1;
PDBTitle: structure of c. immitis chitinase 1 complexed with2 allosamidin
43c2mulA_



not modelled 6.8 28
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1;
PDBTitle: solution structure of the ubm1 domain of human huwe1/arf-bp1
44c5m32p_



not modelled 6.8 23
PDB header:hydrolase
Chain: P: PDB Molecule:proteasome subunit alpha type-4;
PDBTitle: human 26s proteasome in complex with oprozomib
45d1w96c1



not modelled 6.6 16
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
46c4qslC_



not modelled 6.6 22
PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of listeria monocytogenes pyruvate carboxylase
47d2v4jc1



not modelled 6.4 43
Fold:DsrC, the gamma subunit of dissimilatory sulfite reductase
Superfamily:DsrC, the gamma subunit of dissimilatory sulfite reductase
Family:DsrC, the gamma subunit of dissimilatory sulfite reductase
48c3va7A_



not modelled 6.4 18
PDB header:ligase
Chain: A: PDB Molecule:klla0e08119p;
PDBTitle: crystal structure of the kluyveromyces lactis urea carboxylase
49c4pdtA_



not modelled 6.2 29
PDB header:sugar binding protein
Chain: A: PDB Molecule:mannose recognizing lectin;
PDBTitle: japanese marasmius oreades lectin
50c3brtC_



not modelled 6.2 80
PDB header:transferase/transcription
Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase subunit beta,
PDBTitle: nemo/ikk association domain structure
51d2g4ca1



not modelled 6.0 45
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
52c3n6rK_



not modelled 5.9 21
PDB header:ligase
Chain: K: PDB Molecule:propionyl-coa carboxylase, alpha subunit;
PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
53c4js0B_



not modelled 5.7 45
PDB header:signaling protein/signaling protein
Chain: B: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein
PDBTitle: complex of cdc42 with the crib-pr domain of irsp53
54c2kq5A_



not modelled 5.6 37
PDB header:unknown function
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha
55c2l5bA_



not modelled 5.6 50
PDB header:apoptosis
Chain: A: PDB Molecule:activator of apoptosis harakiri;
PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
56c2vxcA_



not modelled 5.5 23
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9;
PDBTitle: structure of the crb2-brct2 domain complex with phosphopeptide.
57c1yx3A_



not modelled 5.4 43
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dsrc;
PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
58c2dhyA_



not modelled 5.4 15
PDB header:immune system
Chain: A: PDB Molecule:cue domain-containing protein 1;
PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1)
59c1r7gA_



not modelled 5.1 30
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc)
60c1r7cA_



not modelled 5.1 30
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 50% tfe)

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