Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2681_(-)_2996749_2998065
DateWed Aug 7 12:50:33 BST 2019
Unique Job IDc7fc9386a5d788db
SequenceMCPEPSHAGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.303 Y:72.086 Z:71.825
Model (left) based on template c3cymA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
Confidence and coverage
Confidence:100.0% Coverage: 90%
395 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3cymA_
100.0 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
2c1yt3A_
100.0 25
PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
3c5c0wK_
100.0 22
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
4c4nlbA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:ribosomal rna processing protein 6;
PDBTitle: crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
5c2hbkA_
100.0 23
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
6c4oo1J_
100.0 25
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
7c3sahA_
100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:exosome component 10;
PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
8c5c0xK_
100.0 22
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to structured2 rna
9d2hbka2
100.0 24
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
10d1yt3a3
100.0 28
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
11c5fiqE_
100.0 13
PDB header:hydrolase
Chain: E: PDB Molecule:exd1;
PDBTitle: exonuclease domain-containing 1 (exd1) in the native conformation
12c5zo4B_
100.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:putative 3'-5' exonuclease family protein;
PDBTitle: inactive state of the nuclease
13c2e6mA_
100.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog;
PDBTitle: structure of mouse werner exonuclease domain
14c5dkuB_
100.0 17
PDB header:transferase
Chain: B: PDB Molecule:prex dna polymerase;
PDBTitle: c-terminal his tagged appol exonuclease mutant
15c6k1dB_
100.0 15
PDB header:hydrolase
Chain: B: PDB Molecule:exonuclease 3'-5' domain-containing protein 2;
PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
16d1vk0a_
100.0 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
17c5v5fA_
100.0 10
PDB header:transferase
Chain: A: PDB Molecule:at3g11770;
PDBTitle: crystal structure of rice1 (pnt2)
18c2kzzA_
100.0 18
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
19d1kfsa1
100.0 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
20c1njzA_
99.9 12
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: cytosine-thymine mismatch at the polymerase active site
21d2hhva1
not modelled 99.9 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
22d1yt3a1
not modelled 99.9 24
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
23c4x0pB_
not modelled 99.9 15
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase theta;
PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
24d2cpra1
not modelled 99.8 17
Fold:SAM domain-like
Superfamily:HRDC-like
Family:EXOSC10 HRDC domain-like
25d2hbka1
not modelled 99.8 22
Fold:SAM domain-like
Superfamily:HRDC-like
Family:EXOSC10 HRDC domain-like
26c4xviA_
not modelled 99.7 12
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase nu;
PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
27c4ktqA_
not modelled 99.5 20
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (large fragment of dna polymerase i);
PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
28d1wuda1
not modelled 99.5 20
Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
29c1tk0A_
not modelled 99.5 18
PDB header:transferase/electron transport/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
30c2rhfA_
not modelled 99.4 11
PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase recq;
PDBTitle: d. radiodurans recq hrdc domain 3
31c2ma1A_
not modelled 99.4 19
PDB header:dna binding protein
Chain: A: PDB Molecule:dna helicase recq;
PDBTitle: solution structure of hrdc1 domain of recq helicase from deinococcus2 radiodurans
32c2rrdA_
not modelled 99.4 10
PDB header:dna binding protein
Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein;
PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm
33d1yt3a2
not modelled 99.4 25
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
34d2e1fa1
not modelled 99.3 15
Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
35c1cmwA_
not modelled 98.9 18
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
36d1d8ba_
not modelled 98.7 18
Fold:SAM domain-like
Superfamily:HRDC-like
Family:HRDC domain from helicases
37c4cdgA_
not modelled 98.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:bloom syndrome protein;
PDBTitle: crystal structure of the bloom's syndrome helicase blm in complex with2 nanobody
38d1x9ma1
not modelled 98.5 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
39c2p1jB_
not modelled 97.9 22
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
40d1wlja_
not modelled 97.9 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
41c4czwA_
not modelled 97.8 18
PDB header:gene regulation
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
42d2f96a1
not modelled 97.7 24
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
43c2is3B_
not modelled 97.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t
44c5z9xA_
not modelled 97.5 19
PDB header:plant protein/rna
Chain: A: PDB Molecule:small rna degrading nuclease 1;
PDBTitle: arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
45c4q8jA_
not modelled 97.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
46c5fkvD_
not modelled 97.4 21
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase iii epsilon;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
47c4wbqA_
not modelled 97.4 14
PDB header:rna binding protein
Chain: A: PDB Molecule:qde-2-interacting protein;
PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
48c6r5kA_
not modelled 97.0 23
PDB header:rna binding protein
Chain: A: PDB Molecule:pan2-pan3 deadenylation complex catalytic subunit pan2;
PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
49d2guia1
not modelled 96.9 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
50d1y97a1
not modelled 96.9 22
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
51d1qhta1
not modelled 96.8 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
52d1wn7a1
not modelled 96.4 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
53d1d5aa1
not modelled 96.3 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
54d3b6oa1
not modelled 96.3 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
55d1tgoa1
not modelled 96.2 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
56c3u6fA_
not modelled 96.2 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant
57c3ikmD_
not modelled 96.0 20
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase holoenzyme
58c4ztuA_
not modelled 95.9 19
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
59c5l80B_
not modelled 95.8 17
PDB header:rna binding protein
Chain: B: PDB Molecule:maternal protein exuperantia,maternal protein exuperantia;
PDBTitle: structure of exuperantia exo-like and sam-like domains
60c3cm6A_
not modelled 95.0 18
PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
61d2qxfa1
not modelled 94.8 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
62c3d45B_
not modelled 94.3 21
PDB header:hydrolase
Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of mouse parn in complex with m7gpppg
63c4rg8A_
not modelled 94.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease i;
PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
64d1j9aa_
not modelled 93.5 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
65c3tr8A_
not modelled 93.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
66c2xriA_
not modelled 93.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3
67c2vwkA_
not modelled 91.1 15
PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
68c1d5aA_
not modelled 88.8 17
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
69c2gbzA_
not modelled 87.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
70d2d5ra1
not modelled 86.6 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
71d2igia1
not modelled 86.4 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
72c5mdnB_
not modelled 86.0 14
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis
73c6a4dA_
not modelled 84.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
74c1q8iA_
not modelled 83.9 17
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii
75c4fzxC_
not modelled 83.7 19
PDB header:hydrolase/dna
Chain: C: PDB Molecule:exodeoxyribonuclease 10;
PDBTitle: exonuclease x in complex with 3' overhanging duplex dna
76c2p51A_
not modelled 82.5 19
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:spcc18.06c protein;
PDBTitle: crystal structure of the s. pombe pop2p deadenylation subunit
77c4gmjB_
not modelled 81.9 19
PDB header:rna binding protein
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 7;
PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
78c2gv9B_
not modelled 80.3 19
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
79c3iayA_
not modelled 78.0 20
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta
80d1q8ia1
not modelled 77.6 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
81c1zbhA_
not modelled 76.6 14
PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
82c4m8oA_
not modelled 76.3 17
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: ternary complex of dna polymerase epsilon with an incoming datp
83d1s5ja1
not modelled 73.9 22
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
84c6fwkB_
not modelled 72.0 18
PDB header:dna binding protein
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: the crystal structure of pol2core-m644g in complex with dna and an2 incoming nucleotide
85d1noya_
not modelled 70.6 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
86d1ih7a1
not modelled 67.7 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
87c6n6dA_
not modelled 67.0 17
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: vibrio cholerae oligoribonuclease bound to pag
88c2vxdA_
not modelled 62.5 16
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: the structure of the c-terminal domain of nucleophosmin
89c5cy4C_
not modelled 57.6 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:oligoribonuclease;
PDBTitle: crystal structure of an oligoribonuclease from acinetobacter baumannii
90d1uoca_
not modelled 56.9 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
91c2a1sC_
not modelled 52.2 23
PDB header:hydrolase
Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of native parn nuclease domain
92c2llhA_
not modelled 50.3 17
PDB header:dna binding protein, chaperone
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: nmr structure of npm1_c70
93c5okiA_
not modelled 48.5 15
PDB header:replication
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
94c2dtuA_
not modelled 38.8 15
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
95c6n6jB_
not modelled 35.4 13
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:rna exonuclease 2 homolog,small fragment nuclease;
PDBTitle: human rexo2 bound to paa
96c3frrA_
not modelled 33.5 18
PDB header:protein binding
Chain: A: PDB Molecule:uncharacterized protein kiaa0174;
PDBTitle: structure of human ist1(ntd) - (residues 1-189)(p21)
97c3ggzC_
not modelled 28.7 18
PDB header:protein transport, endocytosis
Chain: C: PDB Molecule:increased sodium tolerance protein 1;
PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in complex2 with did2 mim motif
98c2of5K_
not modelled 21.3 16
PDB header:apoptosis
Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing protein;
PDBTitle: oligomeric death domain complex
99c4q5vA_
not modelled 20.0 14
PDB header:transferase/dna/rna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of the catalytic core of human dna polymerase alpha2 in ternary complex with an rna-primed dna template and aphidicolin

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