Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2690c_(-)_3007246_3009219
DateWed Aug 7 12:50:34 BST 2019
Unique Job IDdf7d54aa3a037f96
SequenceVSKLSTAARR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:72.082 Y:57.507 Z:124.899
Model (left) based on template c6nplA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
Confidence and coverage
Confidence:100.0% Coverage: 87%
573 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6nplA_
100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
2c4djiA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
3c6f2wA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
4c3giaA_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
5c5oqtA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
6c6irtB_
100.0 12
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
7c3lrcC_
100.0 13
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
8c6jmqA_
100.0 12
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
9c6csfC_
99.9 13
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
10c2jlnA_
99.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
11c5m87A_
99.2 10
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
12c4wgvC_
99.1 8
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
13c4wgwA_
99.1 8
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
14c6c08F_
99.0 9
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
15c5nvaA_
98.8 11
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
16c2xq2A_
98.3 11
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
17c3dh4A_
97.9 10
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
18c6c08C_
97.8 11
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
19c4m48A_
96.0 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
20c5i6xA_
93.1 9
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
21c2w8aC_
not modelled 92.9 12
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
22c3n0vD_
not modelled 91.2 12
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
23c3o1lB_
not modelled 89.7 11
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
24c3obiC_
not modelled 89.5 7
PDB header:hydrolase
Chain: C: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution
25c3w7bB_
not modelled 85.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase from thermus2 thermophilus hb8
26c3louB_
not modelled 84.9 11
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
27c4ainB_
not modelled 82.3 13
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
28c5kteA_
not modelled 81.2 14
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
29c3nrbD_
not modelled 78.7 13
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
30c5z1fA_
not modelled 71.0 13
PDB header:metal transport
Chain: A: PDB Molecule:csc1-like protein erd4;
PDBTitle: structure of atosca3.1 channel
31c3hfxA_
not modelled 66.8 10
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
32c5yd1B_
not modelled 65.5 13
PDB header:metal transport
Chain: B: PDB Molecule:protein osca1;
PDBTitle: structure of atosca1.1 channel
33c2l69A_
not modelled 64.0 13
PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x3 fold protein;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28
34d1tq8a_
not modelled 56.0 10
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
35c3dloC_
not modelled 45.7 14
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:universal stress protein;
PDBTitle: structure of universal stress protein from archaeoglobus fulgidus
36c3loqA_
not modelled 43.7 18
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:universal stress protein;
PDBTitle: the crystal structure of a universal stress protein from archaeoglobus2 fulgidus dsm 4304
37c5b6aA_
not modelled 42.7 13
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase pdxy;
PDBTitle: structure of pyridoxal kinasefrom pseudomonas aeruginosa
38c6nt5B_
not modelled 41.2 14
PDB header:immune system
Chain: B: PDB Molecule:stimulator of interferon protein;
PDBTitle: cryo-em structure of full-length human sting in the apo state
39c4j29A_
not modelled 40.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:engineered protein or258;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or258.
40c1o94D_
not modelled 40.4 16
PDB header:electron transport
Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit;
PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein
41c3foqA_
not modelled 38.5 13
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of n-acetylglucosamine-1-phosphate2 uridyltransferase (glmu) from mycobacterium tuberculosis in3 a cubic space group.
42d2iela1
not modelled 36.4 16
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
43d2cl5a1
not modelled 34.6 8
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
44c4hkrB_
not modelled 34.0 10
PDB header:transport protein
Chain: B: PDB Molecule:calcium release-activated calcium channel protein 1;
PDBTitle: calcium release-activated calcium (crac) channel orai
45c3kl7A_
not modelled 33.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative metal-dependent hydrolase;
PDBTitle: crystal structure of putative metal-dependent hydrolase2 (yp_001302908.1) from parabacteroides distasonis atcc 8503 at 2.30 a3 resolution
46c5c2gD_
not modelled 31.5 16
PDB header:lyase
Chain: D: PDB Molecule:form ii rubisco;
PDBTitle: gws1b rubisco: form ii rubisco derived from uncultivated2 gallionellacea species (cabp-bound).
47c2hu7A_
not modelled 30.5 8
PDB header:hydrolase
Chain: A: PDB Molecule:acylamino-acid-releasing enzyme;
PDBTitle: binding of inhibitors by acylaminoacyl peptidase
48c4us3A_
not modelled 29.3 9
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
49d1vi9a_
not modelled 28.1 15
Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
50d2ajta2
not modelled 27.8 16
Fold:FucI/AraA N-terminal and middle domains
Superfamily:FucI/AraA N-terminal and middle domains
Family:AraA N-terminal and middle domain-like
51c5lhmA_
not modelled 27.4 17
PDB header:transferase
Chain: A: PDB Molecule:putative o-methyltransferase;
PDBTitle: crystal structure of safc from myxococcus xanthus apo-form
52c3mt0A_
not modelled 27.1 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pa1789;
PDBTitle: the crystal structure of a functionally unknown protein pa1789 from2 pseudomonas aeruginosa pao1
53c2qkxA_
not modelled 26.8 12
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate
54d5ruba1
not modelled 26.8 23
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
55c2hnkC_
not modelled 26.7 15
PDB header:transferase
Chain: C: PDB Molecule:sam-dependent o-methyltransferase;
PDBTitle: crystal structure of sam-dependent o-methyltransferase from pathogenic2 bacterium leptospira interrogans
56c3r3hA_
not modelled 26.7 16
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase, sam-dependent;
PDBTitle: crystal structure of o-methyltransferase from legionella pneumophila
57c2j89A_
not modelled 26.3 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine sulfoxide reductase a;
PDBTitle: functional and structural aspects of poplar cytosolic and2 plastidial type a methionine sulfoxide reductases
58c3av3A_
not modelled 25.7 6
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of glycinamide ribonucleotide transformylase 1 from2 geobacillus kaustophilus
59c3d8vA_
not modelled 25.1 9
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis2 in complex with uridine-diphosphate-n-acetylglucosamine
60d1susa1
not modelled 24.4 18
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
61c5ghaC_
not modelled 24.3 10
PDB header:transferase/transport protein
Chain: C: PDB Molecule:sulfur transferase ttua;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
62c9rubB_
not modelled 23.9 23
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase;
PDBTitle: crystal structure of activated ribulose-1,5-bisphosphate carboxylase2 complexed with its substrate, ribulose-1,5-bisphosphate
63c4r2lB_
not modelled 23.8 15
PDB header:unknown function
Chain: B: PDB Molecule:universal stress protein f;
PDBTitle: crystal structure of ynaf (universal stress protein f) from salmonella2 typhimurium
64c5h7pB_
not modelled 23.5 28
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 46;
PDBTitle: nmr structure of the vta1ntd-did2(176-204) complex
65c3tr6A_
not modelled 22.8 14
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: structure of a o-methyltransferase from coxiella burnetii
66d3clsd1
not modelled 21.3 16
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
67c6rtfA_
not modelled 20.6 13
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 26 member 9,solute carrier family 26
PDBTitle: structure of murine solute carrier 26 family member a9 (slc26a9) anion2 transporter in an intermediate state
68d2z3va1
not modelled 20.3 10
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
69d1amua_
not modelled 20.2 12
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
70c5wb4H_
not modelled 19.6 7
PDB header:transferase
Chain: H: PDB Molecule:n-acetylglucosaminyldiphosphoundecaprenol n-acetyl-beta-d-
PDBTitle: crystal structure of the tara wall teichoic acid glycosyltransferase
71d2gm3a1
not modelled 19.4 10
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
72c5f9yB_
not modelled 19.1 16
PDB header:ligase
Chain: B: PDB Molecule:aminoacyl-trna synthetase;
PDBTitle: crystal structure of prolyl-trna synthetase from cryptosporidium2 parvum complexed with l-proline and amp
73d1jkxa_
not modelled 18.7 13
Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
74c3g74B_
not modelled 18.5 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein of unknown function;
PDBTitle: crystal structure of a functionally unknown protein from eubacterium2 ventriosum atcc 27560
75d1hyua4
not modelled 18.2 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
76c3p3dA_
not modelled 18.0 20
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleoporin 53;
PDBTitle: crystal structure of the nup53 rrm domain from pichia guilliermondii
77c4zrsA_
not modelled 17.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:esterase;
PDBTitle: crystal structure of a cloned feruloyl esterase from a soil2 metagenomic library
78c2xvzA_
not modelled 17.2 12
PDB header:metal binding protein
Chain: A: PDB Molecule:chelatase, putative;
PDBTitle: cobalt chelatase cbik (periplasmatic) from desulvobrio2 vulgaris hildenborough (co-crystallized with cobalt)
79c1keeH_
not modelled 16.0 35
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
80d1u11a_
not modelled 15.7 13
Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
81c6ajjA_
not modelled 15.7 14
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
82c3b4uB_
not modelled 15.7 13
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
83c5n5dA_
not modelled 15.4 18
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of the o-methyltransferase tomg from streptomyces2 achromogenes involved in tomaymycin synthesis in complex with sam
84c4ds3A_
not modelled 15.3 17
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 brucella melitensis
85d2v0ea1
not modelled 15.1 26
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
86c2fw9A_
not modelled 15.0 13
PDB header:lyase
Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
87c4n7wA_
not modelled 14.9 8
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
88c3pilA_
not modelled 14.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
89d1w7pd2
not modelled 14.7 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
90c5fa9B_
not modelled 14.7 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase msra;
PDBTitle: bifunctional methionine sulfoxide reductase ab (msrab) from treponema2 denticola
91c3tqkA_
not modelled 14.3 19
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: structure of phospho-2-dehydro-3-deoxyheptonate aldolase from2 francisella tularensis schu s4
92c2pfsA_
not modelled 14.3 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:universal stress protein;
PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea
93c1qcrD_
not modelled 14.1 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:ubiquinol cytochrome c oxidoreductase;
PDBTitle: crystal structure of bovine mitochondrial cytochrome bc12 complex, alpha carbon atoms only
94c3d98A_
not modelled 14.1 12
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form
95d1k47a2
not modelled 14.1 22
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Phosphomevalonate kinase (PMK)
96c3ecsD_
not modelled 14.1 20
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of human eif2b alpha
97c5jjpC_
not modelled 14.0 21
PDB header:ligase
Chain: C: PDB Molecule:nonribosomal peptide synthase;
PDBTitle: crystal structure of cmis6
98c5ahkB_
not modelled 13.9 16
PDB header:transferase
Chain: B: PDB Molecule:acetolactate synthase ii, large subunit;
PDBTitle: crystal structure of acetohydroxy acid synthase pf5 from2 pseudomonas protegens
99c3bchA_
not modelled 13.8 17
PDB header:cell adhesion, ribosomal protein
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: crystal structure of the human laminin receptor precursor

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Transmembrane helix prediction 

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