Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2696c_(-)_3012839_3013618
DateWed Aug 7 12:50:35 BST 2019
Unique Job ID9f9888456a65c2be
SequenceMAFGRRTGKD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.733 Y:42.980 Z:41.453
Model (left) based on template c3dktD_
Top template information
PDB header:structural protein/virus like particle
Chain: D: PDB Molecule:maritimacin;
PDBTitle: crystal structure of thermotoga maritima encapsulin
Confidence and coverage
Confidence: 55.1% Coverage: 24%
61 residues ( 24% of your sequence) have been modelled with 55.1% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3dktD_



55.1 23
PDB header:structural protein/virus like particle
Chain: D: PDB Molecule:maritimacin;
PDBTitle: crystal structure of thermotoga maritima encapsulin
2d1xa1a_



28.7 11
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
3c2ytxA_



28.6 20
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein)
4d1f0ya2



23.1 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
5c3r1jB_



19.4 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase;
PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form
6d1otja_



18.8 31
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:TauD/TfdA-like
7c5vn6B_



18.0 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:taurine dioxygenase;
PDBTitle: crystal structure of taurine dioxygenase from burkholderia ambifaria
8d1wdka3



16.4 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
9c5i65A_



15.7 47
PDB header:unknown function
Chain: A: PDB Molecule:nonstructural proteins orf1a;
PDBTitle: porcine reproductive and respiratory syndrome virus nonstructural2 protein 7 alpha (nsp7 alpha)
10d1v8ca2



15.6 38
Fold:TBP-like
Superfamily:MoaD-related protein, C-terminal domain
Family:MoaD-related protein, C-terminal domain
11c3nctC_



15.3 31
PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
12c5hsxB_



14.9 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative alpha-ketoglutarate-dependent taurine dioxygenase;
PDBTitle: crystal structure of a putative alpha-ketoglutarate-dependent taurine2 dioxygenase from burkholderia xenovorans
13d2fr1a2



13.8 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
14c5bkeF_



13.0 38
PDB header:oxidoreductase
Chain: F: PDB Molecule:alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate
PDBTitle: crystal structure of aad-2 in complex with mn(ii) and n-oxalylglycine
15c4pt2B_



12.7 18
PDB header:virus like particle
Chain: B: PDB Molecule:encapsulin protein;
PDBTitle: myxococcus xanthus encapsulin protein (enca)
16c5ghaF_



12.5 29
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
17c3pvjB_



11.8 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase;
PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440
18d1e8ga1



11.5 22
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
19c5kpeA_



11.4 17
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
20c6dawA_



9.9 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:non-heme iron hydroxylase;
PDBTitle: x-ray crystal structure of napi l-arginine desaturase bound to fe(ii),2 l-arginine, and acetate
21c2wbqA_



not modelled 9.4 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-arginine beta-hydroxylase;
PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine
22d1gmua2



not modelled 8.8 15
Fold:Ferredoxin-like
Superfamily:Urease metallochaperone UreE, C-terminal domain
Family:Urease metallochaperone UreE, C-terminal domain
23c6nhuD_



not modelled 8.8 16
PDB header:hydrolase
Chain: D: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from2 agrobacterium fabrum
24c5yxaC_



not modelled 8.7 19
PDB header:viral protein
Chain: C: PDB Molecule:non-structural protein 1;
PDBTitle: crystal structure of the c-terminal fragment of ns1 protein from2 yellow fever virus
25c4hpmA_



not modelled 8.3 29
PDB header:transcription
Chain: A: PDB Molecule:bcl-6 corepressor-like protein 1;
PDBTitle: pcgf1 ub fold (rawul)/bcorl1 pufd complex
26c4ne0B_



not modelled 8.2 38
PDB header:hydrolase
Chain: B: PDB Molecule:l-arginine beta-hydroxylase;
PDBTitle: crystal structure of non-heme iron oxygenase orfp d157a mutant in2 complex with (3s)-hydroxy-l-arg
27c4hplA_



not modelled 8.1 43
PDB header:transcription
Chain: A: PDB Molecule:bcl-6 corepressor;
PDBTitle: pcgf1 ub fold (rawul)/bcor pufd complex
28c3s5bB_



not modelled 8.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:endonuclease g;
PDBTitle: crystal structure of ced-3 protease suppressor-6 (cps-6) from2 caenorhabditis elegans
29c4j5iH_



not modelled 8.0 38
PDB header:oxidoreductase
Chain: H: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase;
PDBTitle: crystal structure of an alpha-ketoglutarate-dependent taurine2 dioxygenase from mycobacterium smegmatis
30c6dx5B_



not modelled 8.0 22
PDB header:hydrolase, protein binding
Chain: B: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from farallon virus
31c4gn2A_



not modelled 7.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:oxacillinase;
PDBTitle: crystal structure of oxa-45, a class d beta-lactamase with extended2 spectrum activity
32d1wvfa1



not modelled 7.7 19
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
33c2h8bB_



not modelled 7.7 75
PDB header:hormone/growth factor
Chain: B: PDB Molecule:insulin-like 3;
PDBTitle: solution structure of insl3
34c5w5pA_



not modelled 7.6 56
PDB header:viral protein
Chain: A: PDB Molecule:tail fiber protein;
PDBTitle: crystal structure of acinetobacter baumannii phage am24 tailspike2 protein
35d1xhca1



not modelled 7.6 16
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
36c6nhsA_



not modelled 7.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from nostoc
37c5iy3A_



not modelled 7.6 23
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: zika virus non-structural protein ns1
38c4y0eB_



not modelled 7.2 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative dioxygenase;
PDBTitle: x-ray crystal structure of a putative dioxygenase from mycobacterium2 abscessus
39c5k6kB_



not modelled 6.4 23
PDB header:viral protein
Chain: B: PDB Molecule:zika virus protein;
PDBTitle: zika virus non-structural protein 1 (ns1)
40c5j92B_



not modelled 6.2 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative alpha kg dependent 2,4-d dioxygenase;
PDBTitle: crystal structure of a putative alpha-ketoglutarate dependent 2,4-d2 dioxygenase from burkholderia xenovorans
41c2iv1J_



not modelled 6.1 16
PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the catalytic2 mechanism of cyanase
42c6k50A_



not modelled 6.0 50
PDB header:antibiotic
Chain: A: PDB Molecule:plectasin derivative nz2114;
PDBTitle: solution structure of plectasin derivative nz2114
43d1oiha_



not modelled 5.9 23
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:TauD/TfdA-like
44d2fmra_



not modelled 5.9 40
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
45c3gf5A_



not modelled 5.8 56
PDB header:structural protein
Chain: A: PDB Molecule:major vault protein;
PDBTitle: crystal structure of the p21 r1-r7 n-terminal domain of murine mvp
46c2rrlA_



not modelled 5.8 8
PDB header:protein transport
Chain: A: PDB Molecule:flagellar hook-length control protein;
PDBTitle: solution structure of the c-terminal domain of the flik
47d1dxsa_



not modelled 5.8 63
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
48d1k38a_



not modelled 5.6 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
49c6ni0A_



not modelled 5.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from burkholderia2 thailandensis
50c4o6cB_



not modelled 5.5 26
PDB header:viral protein
Chain: B: PDB Molecule:ns1;
PDBTitle: west nile virus non-structural protein 1 (ns1) form 2 crystal
51d1oyia_



not modelled 5.4 50
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
52c1oyiA_



not modelled 5.4 50
PDB header:viral protein
Chain: A: PDB Molecule:double-stranded rna-binding protein;
PDBTitle: solution structure of the z-dna binding domain of the2 vaccinia virus gene e3l
53c4ol4A_



not modelled 5.3 11
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
54c3qoqC_



not modelled 5.3 41
PDB header:transcription/dna
Chain: C: PDB Molecule:alginate and motility regulator z;
PDBTitle: crystal structure of the transcription factor amrz in complex with the2 18 base pair amrz1 binding site
55c6d1oD_



not modelled 5.2 31
PDB header:oxidoreductase
Chain: D: PDB Molecule:(r)-phenoxypropionate/alpha-ketoglutarate-dioxygenase;
PDBTitle: ft_5 dioxygenase apoenzyme
56d1ofcx2



not modelled 5.2 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:SLIDE domain
57d1s7ia_



not modelled 5.1 33
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:DGPF domain (Pfam 04946)
58d1gv4a2



not modelled 5.1 11
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains

Binding site prediction 

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