Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2698_(-)_3014183_3014668
DateWed Aug 7 12:50:35 BST 2019
Unique Job IDf54f050968901e42
SequenceVSGTRLAPHS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.694 Y:20.675 Z:16.324
Model (left) based on template c5b0hB_
Top template information
PDB header:metal binding protein
Chain: B: PDB Molecule:leukocyte cell-derived chemotaxin-2;
PDBTitle: crystal structure of human leukocyte cell-derived chemotaxin 2
Confidence and coverage
Confidence: 56.9% Coverage: 12%
20 residues ( 12% of your sequence) have been modelled with 56.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5b0hB_



56.9 30
PDB header:metal binding protein
Chain: B: PDB Molecule:leukocyte cell-derived chemotaxin-2;
PDBTitle: crystal structure of human leukocyte cell-derived chemotaxin 2
2c6hwhX_



49.7 19
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
3c1mtpB_



37.4 50
PDB header:structural genomics
Chain: B: PDB Molecule:serine proteinase inhibitor (serpin), chain b;
PDBTitle: the x-ray crystal structure of a serpin from a thermophilic prokaryote
4d1wjra_



29.6 47
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
5d1oi1a2



29.2 9
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
6c3q0xA_



24.5 7
PDB header:structural protein
Chain: A: PDB Molecule:centriole protein;
PDBTitle: n-terminal coiled-coil dimer domain of c. reinhardtii sas-6 homolog2 bld12p
7c1oz3C_



22.2 18
PDB header:transcription
Chain: C: PDB Molecule:lethal(3)malignant brain tumor-like protein;
PDBTitle: crystal structure of 3-mbt repeats of lethal (3) malignant brain tumor2 (native-i) at 1.85 angstrom
8c3ut1A_



21.5 14
PDB header:transcription
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like protein 3;
PDBTitle: crystal structure of the 3-mbt repeat domain of l3mbtl3
9c3ceyA_



19.4 25
PDB header:transcription regulator
Chain: A: PDB Molecule:lethal(3)malignant brain tumor-like 2 protein;
PDBTitle: crystal structure of l3mbtl2
10d1px5a1



18.8 55
Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:2'-5'-oligoadenylate synthetase 1, OAS1, second domain
11c3q0yA_



18.8 8
PDB header:structural protein
Chain: A: PDB Molecule:centriole protein;
PDBTitle: n-terminal domain of c. reinhardtii sas-6 homolog bld12p
12c4ckmA_



15.1 57
PDB header:structural protein
Chain: A: PDB Molecule:sas-6;
PDBTitle: structure of the n-terminal domain of leishmania sas-6
13c4cknA_



15.0 57
PDB header:structural protein
Chain: A: PDB Molecule:sas-6;
PDBTitle: structure of an n-terminal fragment of leishmania sas-6 containing2 parts of its coiled coil domain, f257e mutant
14c3h6zA_



14.3 10
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein sfmbt;
PDBTitle: crystal structure of the four mbt repeats of drosophila melanogaster2 sfmbt in complex with peptide rhr (me)k vlr
15c1px5A_



13.9 55
PDB header:transferase
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthetase 1;
PDBTitle: crystal structure of the 2'-specific and double-stranded2 rna-activated interferon-induced antiviral protein 2'-5'-3 oligoadenylate synthetase
16c2vytA_



13.8 14
PDB header:transcription
Chain: A: PDB Molecule:sex comb on midleg-like protein 2;
PDBTitle: the mbt repeats of human scml2 bind to peptides containing mono2 methylated lysine.
17c4s3nA_



13.7 55
PDB header:transferase/rna
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase 3;
PDBTitle: crystal structure of human oas3 domain i in complex with dsrna
18d1oz2a2



13.1 14
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
19d1ky8a_



13.0 22
Fold:ALDH-like
Superfamily:ALDH-like
Family:ALDH-like
20d1wjsa_



12.4 18
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
21d1oi1a1



not modelled 12.2 14
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
22c6mvtA_



not modelled 12.1 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: structure of a bacterial aldh16 complexed with nadh
23c5tuvB_



not modelled 12.0 10
PDB header:transcription
Chain: B: PDB Molecule:transcription factor e2f5;
PDBTitle: crystal structure of the e2f5-dp1-p107 ternary complex
24c2y3wA_



not modelled 11.9 29
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 6 homolog;
PDBTitle: n-terminal head domain and beginning of coiled coil domain of danio2 rerio sas-6
25d1oz2a1



not modelled 11.2 24
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
26c4xq7A_



not modelled 11.1 45
PDB header:transferase
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase-like protein;
PDBTitle: the crystal structure of the oas-like domain (old) of human oasl
27c2r58A_



not modelled 10.9 14
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein scm;
PDBTitle: crystal structure of the two mbt repeats from sex-comb on midleg (scm)2 in complex with di-methyl lysine
28d1oz2a3



not modelled 10.6 18
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
29c5al7A_



not modelled 10.5 14
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 6 homolog;
PDBTitle: n-terminal fragment of drosophila melanogaster sas-6 (f143d),2 dimerised via the coiled-coil domain.
30d1wjqa_



not modelled 10.3 12
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
31c2djgC_



not modelled 10.3 33
PDB header:hydrolase
Chain: C: PDB Molecule:dipeptidyl-peptidase 1;
PDBTitle: re-determination of the native structure of human dipeptidyl peptidase2 i (cathepsin c)
32c3sk7B_



not modelled 9.4 50
PDB header:replication inhibitor
Chain: B: PDB Molecule:protein seqa;
PDBTitle: crystal structure of v. cholerae seqa
33c1xdyC_



not modelled 9.4 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:bacterial sulfite oxidase;
PDBTitle: structural and biochemical identification of a novel2 bacterial oxidoreductase, w-containing cofactor
34c4gfcA_



not modelled 9.1 7
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 6;
PDBTitle: n-terminal coiled-coil dimer of c.elegans sas-6, crystal form b
35c2k2uB_



not modelled 9.0 57
PDB header:transcription
Chain: B: PDB Molecule:alpha trans-inducing protein;
PDBTitle: nmr structure of the complex between tfb1 subunit of tfiih2 and the activation domain of vp16
36d2ozga1



not modelled 8.5 13
Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
37d1imhc2



not modelled 8.1 6
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:Rel/Dorsal transcription factors, DNA-binding domain
38c5tugA_



not modelled 8.0 50
PDB header:motor protein
Chain: A: PDB Molecule:flagellar biosynthesis protein flag;
PDBTitle: archaellum periplasmic stator protein complex flaf and flag from2 sulfolobus acidocaldarius
39d1j2jb_



not modelled 8.0 33
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
40d2uyoa1



not modelled 7.8 33
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:ML2640-like
41c6d97B_



not modelled 7.3 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldehyde dehydrogenase 12;
PDBTitle: structure of aldehyde dehydrogenase 12 (aldh12) from zea mays
42c2n5lA_



not modelled 7.2 11
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: regnase-1 c-terminal domain
43c3fmtF_



not modelled 7.1 67
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
44c1sz1A_



not modelled 7.0 30
PDB header:transferase/rna
Chain: A: PDB Molecule:trna nucleotidyltransferase;
PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
45c2azpA_



not modelled 6.8 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa1268;
PDBTitle: crystal structure of pa1268 solved by sulfur sad
46c1nrnR_



not modelled 6.6 36
PDB header:serine proteinase/receptor
Chain: R: PDB Molecule:receptor based peptide nrs;
PDBTitle: crystallographic structures of thrombin complexed with2 thrombin receptor peptides: existence of expected and3 novel binding modes
47d1r89a1



not modelled 6.6 30
Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain
48c1jr3E_



not modelled 6.5 37
PDB header:transferase
Chain: E: PDB Molecule:dna polymerase iii, delta' subunit;
PDBTitle: crystal structure of the processivity clamp loader gamma complex of e.2 coli dna polymerase iii
49c2jg7G_



not modelled 5.7 14
PDB header:oxidoreductase
Chain: G: PDB Molecule:antiquitin;
PDBTitle: crystal structure of seabream antiquitin and elucidation of2 its substrate specificity
50c3pyiA_



not modelled 5.6 7
PDB header:structural protein
Chain: A: PDB Molecule:spindle assembly abnormal protein 6;
PDBTitle: structure of the n-terminal domain of c. elegans sas-6
51c6b9tH_



not modelled 5.6 30
PDB header:oxidoreductase
Chain: H: PDB Molecule:methylphosphonate synthase;
PDBTitle: crystal structure of mpns with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
52d2j2za2



not modelled 5.3 67
Fold:C2 domain-like
Superfamily:Periplasmic chaperone C-domain
Family:Periplasmic chaperone C-domain
53c1ciiA_



not modelled 5.2 15
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
54c2x0dA_



not modelled 5.1 19
PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf

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