Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2699c_(-)_3014673_3014975
DateWed Aug 7 12:50:35 BST 2019
Unique Job ID88cc8fb0bbc3adca
SequenceMPTDYDAPRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.783 Y:45.191 Z:37.524
Model (left) based on template c4kblA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: structure of hhari, a ring-ibr-ring ubiquitin ligase: autoinhibition2 of an ariadne-family e3 and insights into ligation mechanism
Confidence and coverage
Confidence: 51.2% Coverage: 31%
31 residues ( 31% of your sequence) have been modelled with 51.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4kblA_
51.2 23
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase arih1;
PDBTitle: structure of hhari, a ring-ibr-ring ubiquitin ligase: autoinhibition2 of an ariadne-family e3 and insights into ligation mechanism
2c1x68A_
36.3 21
PDB header:protein binding
Chain: A: PDB Molecule:fhl5 protein;
PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein
3c2eciA_
27.1 18
PDB header:metal binding protein
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein
4c2egqA_
27.0 29
PDB header:structural protein
Chain: A: PDB Molecule:fhl1 protein;
PDBTitle: solution structure of the fourth lim domain from human four2 and a half lim domains 1
5c3hcsA_
27.0 18
PDB header:signaling protein
Chain: A: PDB Molecule:tnf receptor-associated factor 6;
PDBTitle: crystal structure of the n-terminal domain of traf6
6c3na4A_
26.1 29
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: d53p beta-2 microglobulin mutant
7c6djxA_
25.0 14
PDB header:transferase
Chain: A: PDB Molecule:rbr-type e3 ubiquitin transferase,rbr-type e3 ubiquitin
PDBTitle: crystal structure of pparkin-pub-ubch7 complex
8d1dl6a_
24.5 23
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
9c2q6wD_
24.0 29
PDB header:immune system
Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr
PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia
10c3j7y4_
23.2 43
PDB header:ribosome
Chain: 4: PDB Molecule:bl36;
PDBTitle: structure of the large ribosomal subunit from human mitochondria
11d2nnab1
23.0 35
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
12d1vgka1
22.9 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
13c3knvA_
22.8 29
PDB header:signaling protein
Chain: A: PDB Molecule:tnf receptor-associated factor 2;
PDBTitle: crystal structure of the ring and first zinc finger domains of traf2
14c2iybG_
22.6 26
PDB header:metal-binding
Chain: G: PDB Molecule:testin;
PDBTitle: structure of complex between the 3rd lim domain of tes and the evh12 domain of mena
15c1x3hA_
22.4 25
PDB header:metal binding protein
Chain: A: PDB Molecule:leupaxin;
PDBTitle: solution structure of the lim domain of human leupaxin
16c3lqzA_
21.5 33
PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dp alpha 1 chain;
PDBTitle: crystal structure of hla-dp2
17c4ce49_
21.5 43
PDB header:ribosome
Chain: 9: PDB Molecule:mrpl36;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
18c2l4zA_
21.4 25
PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:dna endonuclease rbbp8, lim domain transcription factor
PDBTitle: nmr structure of fusion of ctip (641-685) to lmo4-lim1 (18-82)
19c2luyA_
21.3 23
PDB header:dna binding protein
Chain: A: PDB Molecule:meiotic chromosome segregation protein p8b7.28c;
PDBTitle: solution structure of the tandem zinc finger domain of fission yeast2 stc1
20c1x6aA_
21.1 25
PDB header:protein binding
Chain: A: PDB Molecule:lim domain kinase 2;
PDBTitle: solution structures of the second lim domain of human lim-2 kinase 2 (limk2)
21c3usaH_
not modelled 21.0 33
PDB header:immune system
Chain: H: PDB Molecule:hla class ii histocompatibility antigen, do beta chain;
PDBTitle: mhc class ii homolog structure
22c1p1zB_
not modelled 20.9 29
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: x-ray crystal structure of the lectin-like natural killer2 cell receptor ly-49c bound to its mhc class i ligand h-2kb
23c4aenA_
not modelled 20.9 29
PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dr alpha chain;
PDBTitle: hla-dr1 with covalently linked clip106-120 in reversed orientation
24c6a97A_
not modelled 20.7 38
PDB header:immune system
Chain: A: PDB Molecule:mhc i-like leukocyte 2 long form;
PDBTitle: crystal structure of mhc-like mill2
25d1k8ia1
not modelled 20.7 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
26c1x64A_
not modelled 20.5 25
PDB header:contractile protein
Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein;
PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein
27c1n5aB_
not modelled 20.4 29
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2db, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv
28c1s7wB_
not modelled 20.4 29
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 index peptide and3 three of its escape variants
29c3gblA_
not modelled 20.0 48
PDB header:immune system
Chain: A: PDB Molecule:beta2-microglobulin;
PDBTitle: crystal structure of grass carp beta2-microglobulin
30c4k95G_
not modelled 19.9 19
PDB header:ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: crystal structure of parkin
31c2corA_
not modelled 19.5 31
PDB header:structural protein
Chain: A: PDB Molecule:pinch protein;
PDBTitle: solution structure of the third lim domain of particularly2 interesting new cys-his protein
32c1sebB_
not modelled 19.4 35
PDB header:complex (mhc ii/peptide/toxin)
Chain: B: PDB Molecule:hla class ii histocompatibility antigen;
PDBTitle: complex of the human mhc class ii glycoprotein hla-dr1 and2 the bacterial superantigen seb
33d1d5mb1
not modelled 19.2 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
34c2p24A_
not modelled 19.1 25
PDB header:immune system
Chain: A: PDB Molecule:h-2 class ii histocompatibility antigen, a-u alpha chain;
PDBTitle: i-au/mbp125-135
35c4gupD_
not modelled 18.6 33
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of mhc-class i related molecule mr1
36d2po6a1
not modelled 18.6 35
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
37c3lqzB_
not modelled 18.2 38
PDB header:immune system
Chain: B: PDB Molecule:hla-dp2 beta chain linked with dra peptide;
PDBTitle: crystal structure of hla-dp2
38c1f3jD_
not modelled 18.2 25
PDB header:immune system
Chain: D: PDB Molecule:h-2 class ii histocompatibility antigen;
PDBTitle: histocompatibility antigen i-ag7
39c1d9kD_
not modelled 18.1 30
PDB header:immune system
Chain: D: PDB Molecule:mhc i-ak b chain (beta chain);
PDBTitle: crystal structure of complex between d10 tcr and pmhc i-ak/ca
40c2f42A_
not modelled 18.0 11
PDB header:chaperone
Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1;
PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein
41c3rolC_
not modelled 17.7 33
PDB header:immune system
Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain;
PDBTitle: murine class i major histocompatibility complex h-2kb in complex with2 post-translationally modified lcmv-derived gp34-41 peptide,3 comprising a nitrotyrosine at position 3
42c3mrgB_
not modelled 17.2 29
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of mhc class i hla-a2 molecule complexed with hcv2 ns3-1073-1081 nonapeptide
43c3nfjE_
not modelled 17.2 29
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: recognition of peptide-mhc by a v-delta/v-beta tcr
44c3pwnB_
not modelled 17.2 29
PDB header:protein binding
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: human class i mhc hla-a2 in complex with the hud (g2l) peptide variant
45c3pwnE_
not modelled 17.2 29
PDB header:protein binding
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: human class i mhc hla-a2 in complex with the hud (g2l) peptide variant
46c3ox8E_
not modelled 17.2 29
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of hla a*02:03 bound to hbv core 18-27
47d1u58a1
not modelled 17.1 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
48d1j72a2
not modelled 17.0 15
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
49d1hdmb1
not modelled 16.7 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
50c2bc4C_
not modelled 16.6 30
PDB header:immune system
Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm alpha chain;
PDBTitle: crystal structure of hla-dm
51c5cawA_
not modelled 16.5 19
PDB header:signaling protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase parkin;
PDBTitle: structure of pediculus humanus parkin bound to phospho-ubiquitin
52c1s9vA_
not modelled 16.1 24
PDB header:immune system
Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3)
PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide
53d1onqa1
not modelled 16.1 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
54c1x61A_
not modelled 15.9 26
PDB header:cell adhesion
Chain: A: PDB Molecule:thyroid receptor interacting protein 6;
PDBTitle: solution structure of the first lim domain of thyroid2 receptor interacting protein 6 (trip6)
55c5dinB_
not modelled 15.6 21
PDB header:ligase
Chain: B: PDB Molecule:ligand of numb protein x 2;
PDBTitle: structural basis for the indispensable role of a unique zinc finger2 motif in lnx2 ubiquitination
56c1iaoB_
not modelled 15.5 40
PDB header:mhc ii
Chain: B: PDB Molecule:mhc class ii i-ad;
PDBTitle: class ii mhc i-ad in complex with ovalbumin peptide 323-339
57c4ydzA_
not modelled 15.1 18
PDB header:chaperone
Chain: A: PDB Molecule:stress-induced protein 1;
PDBTitle: stress-induced protein 1 from caenorhabditis elegans
58c2dloA_
not modelled 14.8 18
PDB header:cell adhesion
Chain: A: PDB Molecule:thyroid receptor-interacting protein 6;
PDBTitle: solution structure of the second lim domain of human2 thyroid receptor-interacting protein 6
59c5gjxA_
not modelled 14.7 33
PDB header:immune system
Chain: A: PDB Molecule:mhc class i antigen;
PDBTitle: crystal structure of duck mhc i for 2.06 angstrom
60c4epoL_
not modelled 14.6 17
PDB header:protein binding/ligase
Chain: L: PDB Molecule:e3 ubiquitin-protein ligase rnf8;
PDBTitle: crystal structure of rnf8 bound to the ubc13/mms2 heterodimer
61c3dbxA_
not modelled 14.3 33
PDB header:immune system
Chain: A: PDB Molecule:cd1-2 antigen;
PDBTitle: structure of chicken cd1-2 with bound fatty acid
62c4fxlA_
not modelled 14.2 29
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the d76n beta-2 microglobulin mutant
63c1iebD_
not modelled 14.1 38
PDB header:histocompatibility antigen
Chain: D: PDB Molecule:mhc class ii i-ek;
PDBTitle: histocompatibility antigen
64c3tm6C_
not modelled 13.8 29
PDB header:immune system
Chain: C: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
65c3tm6E_
not modelled 13.8 29
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
66c3tm6G_
not modelled 13.8 29
PDB header:immune system
Chain: G: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
67c3tm6F_
not modelled 13.8 29
PDB header:immune system
Chain: F: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
68c3tm6H_
not modelled 13.8 29
PDB header:immune system
Chain: H: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the beta-2 microglobulin dimc50 disulphide-linked2 homodimer mutant
69c1z6uA_
not modelled 13.8 21
PDB header:ligase
Chain: A: PDB Molecule:np95-like ring finger protein isoform b;
PDBTitle: np95-like ring finger protein isoform b [homo sapiens]
70c1x4lA_
not modelled 13.4 29
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 3;
PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2
71d1de4a1
not modelled 13.4 30
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
72c1z5lD_
not modelled 13.3 33
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of a highly potent short-chain galactosyl ceramide agonist2 bound to cd1d
73c4elmB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of the mouse cd1d-lysosulfatide-hy19.3 tcr complex
74c2q7yB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of the endogenous inkt cell ligand igb3 bound to mcd1d
75c4ei5B_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of xv19 tcr in complex with cd1d-sulfatide c24:1
76c3ma7B_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of cardiolipin bound to mouse cd1d
77c3tvmB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of the mouse cd1d-smc124-inkt tcr complex
78c1z5lB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of a highly potent short-chain galactosyl ceramide agonist2 bound to cd1d
79c2q7yD_
not modelled 13.3 33
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of the endogenous inkt cell ligand igb3 bound to mcd1d
80c3arbB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the nkt tcr-cd1d-alpha-galactosylceramide2 analogue-och
81c2gazB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: mycobacterial lipoglycan presentation by cd1d
82c3ma7D_
not modelled 13.3 33
PDB header:immune system
Chain: D: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of cardiolipin bound to mouse cd1d
83c2akrB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: structural basis of sulfatide presentation by mouse cd1d
84c3rzcB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of the self-antigen igb3 bound to mouse cd1d and in complex2 with the inkt tcr
85c3argB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: ternary crystal structure of the mouse nkt tcr-cd1d-alpha-2 glucosylceramide(c20:2)
86c3ubxE_
not modelled 13.3 33
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the mouse cd1d-c20:2-agalcer-l363 mab fab complex
87c3rugB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of valpha10-vbeta8.1 nkt tcr in complex with cd1d-2 alphaglucosylceramide (c20:2)
88c2akrD_
not modelled 13.3 33
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: structural basis of sulfatide presentation by mouse cd1d
89c3to4B_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of mouse valpha14vbeta2-mousecd1d-alpha-galactosylceramide
90c3rugD_
not modelled 13.3 33
PDB header:immune system
Chain: D: PDB Molecule:beta-2 microglobulin;
PDBTitle: crystal structure of valpha10-vbeta8.1 nkt tcr in complex with cd1d-2 alphaglucosylceramide (c20:2)
91c3quyB_
not modelled 13.3 33
PDB header:immune system
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: structure of the mouse cd1d-bnnh-gsl-1'-inkt tcr complex
92c1s7xK_
not modelled 13.1 30
PDB header:immune system
Chain: K: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 index peptide and3 three of its escape variants
93c1n3nF_
not modelled 13.1 30
PDB header:immune system
Chain: F: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of a mycobacterial hsp60 epitope with the2 murine class i mhc molecule h-2db
94c1nanI_
not modelled 13.1 30
PDB header:immune system
Chain: I: PDB Molecule:beta-2-microglobulin;
PDBTitle: mch class i h-2kb molecule complexed with pbm1 peptide
95c3cvhB_
not modelled 13.1 30
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: how tcr-like antibody recognizes mhc-bound peptide
96c1s7vE_
not modelled 13.1 30
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major2 histocompatibility complex h-2db in complex with lcmv-3 derived gp33 index peptide and three of its escape variants
97c1s7xE_
not modelled 13.1 30
PDB header:immune system
Chain: E: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 index peptide and3 three of its escape variants
98c1vacB_
not modelled 13.1 30
PDB header:complex (mhc i/peptide)
Chain: B: PDB Molecule:beta-2 microglobulin;
PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and chicken ovalbumin
99c2fwoB_
not modelled 13.1 30
PDB header:immune system/viral protein
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: mhc class i h-2kd heavy chain in complex with beta-2microglobulin and2 peptide derived from influenza nucleoprotein

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