Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2700_(-)_3015213_3015863
DateWed Aug 7 12:50:35 BST 2019
Unique Job ID98c288503356a58f
SequenceVVAQITEGTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.855 Y:87.047 Z:107.239
Model (left) based on template c2m5yA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:putative tuberculin related peptide;
PDBTitle: solution structure of the c-terminal domain of rv0431
Confidence and coverage
Confidence: 99.6% Coverage: 53%
115 residues ( 53% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2m5yA_
99.6 17
PDB header:unknown function
Chain: A: PDB Molecule:putative tuberculin related peptide;
PDBTitle: solution structure of the c-terminal domain of rv0431
2c2kogA_
65.8 13
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
3c2n28A_
41.1 19
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
4c4b2oB_
28.3 29
PDB header:hydrolase
Chain: B: PDB Molecule:ymdb phosphodiesterase;
PDBTitle: crystal structure of bacillus subtilis ymdb, a global2 regulator of late adaptive responses.
5c3hd7A_
27.6 13
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
6c6mctF_
26.3 10
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
7c6mctJ_
26.3 10
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
8c6mctD_
26.3 10
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
9c6mctN_
26.3 10
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
10c6mctC_
26.3 10
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
11c6mctB_
26.3 10
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
12c6mctA_
26.3 10
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
13c6mctK_
26.3 10
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
14c6mctI_
26.3 10
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
15c6mctH_
26.3 10
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
16c6mctL_
26.3 10
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
17c6mq2D_
26.3 10
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
18c6mctM_
26.3 10
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
19c6mctE_
26.3 10
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
20c6mctO_
26.3 10
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
21c6mpwA_
not modelled 26.3 10
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
22c6mctG_
not modelled 26.1 10
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
23c6mq2A_
not modelled 25.2 10
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
24c6mq2C_
not modelled 25.2 10
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
25c6mpwE_
not modelled 25.2 10
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
26c6mq2B_
not modelled 25.2 10
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
27c6mpwD_
not modelled 25.2 10
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
28c6mpwB_
not modelled 25.2 10
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
29c6mpwC_
not modelled 25.2 10
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
30c6mq2E_
not modelled 25.2 10
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
31d1t71a_
not modelled 25.1 18
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:DR1281-like
32d2z06a1
not modelled 23.8 17
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:TTHA0625-like
33d1t70a_
not modelled 21.2 22
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:DR1281-like
34c2m59A_
not modelled 16.7 21
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
35c2m59B_
not modelled 16.7 21
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
36c3hfxA_
not modelled 16.1 14
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
37c1pi8A_
not modelled 15.5 26
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1
38c2gohA_
not modelled 15.5 26
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles
39c1pjeA_
not modelled 15.5 26
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u"(vpu) from hiv-1
40c1pi7A_
not modelled 15.5 26
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1
41c2gofA_
not modelled 15.5 26
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles
42c5yq7C_
not modelled 12.8 21
PDB header:photosynthesis
Chain: C: PDB Molecule:cytochrome subunit of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
43c6f0kA_
not modelled 12.8 17
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
44c2xagA_
not modelled 11.8 16
PDB header:transcription
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine
45c2v1dA_
not modelled 11.8 16
PDB header:oxidoreductase/repressor
Chain: A: PDB Molecule:lysine-specific histone demethylase 1;
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
46c2voyE_
not modelled 10.1 12
PDB header:hydrolase
Chain: E: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
47c3dinD_
not modelled 8.9 26
PDB header:membrane protein, protein transport
Chain: D: PDB Molecule:preprotein translocase subunit sece;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
48d1qf6a1
not modelled 8.7 17
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
49c1yaxB_
not modelled 8.6 18
PDB header:transferase, signaling protein
Chain: B: PDB Molecule:virulence sensor protein phoq, sensor domain;
PDBTitle: cystal structure analysis of s.typhimurium phoq sensor domain with2 calcium
50c5gnnA_
not modelled 8.3 38
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipid binding protein;
PDBTitle: crystal structure of lipid binding protein nakanori at 1.6a
51c4alzA_
not modelled 7.8 19
PDB header:membrane protein
Chain: A: PDB Molecule:yop proteins translocation protein d;
PDBTitle: the yersinia t3ss basal body component yscd reveals a different2 structural periplasmatic domain organization to known homologue prgh
52c4ainB_
not modelled 7.2 21
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
53c2w8aC_
not modelled 6.7 21
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
54c5eulE_
not modelled 6.3 22
PDB header:protein transport
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: structure of the seca-secy complex with a translocating polypeptide2 substrate
55c2jwaA_
not modelled 6.2 39
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
56c2ks1A_
not modelled 6.2 39
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
57c6btmA_
not modelled 5.8 5
PDB header:membrane protein
Chain: A: PDB Molecule:alternative complex iii subunit a;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
58c4alnE_
not modelled 5.5 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:enoyl-[acyl-carrier-protein] reductase [nadph];
PDBTitle: crystal structure of s. aureus fabi (p32)
59c4tqvJ_
not modelled 5.4 27
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
60c6cztA_
not modelled 5.1 27
PDB header:cell adhesion
Chain: A: PDB Molecule:alginate biosynthesis protein algf;
PDBTitle: cs-rosetta determined structures of the n-terminal domain of algf from2 p. aeruginosa
61c2ptgA_
not modelled 5.1 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:enoyl-acyl carrier reductase;
PDBTitle: crystal structure of eimeria tenella enoyl reductase
62d1bcga_
not modelled 5.1 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
63d1yt8a4
not modelled 5.0 16
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)

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Transmembrane helix prediction 

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