Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2704_(-)_3019468_3019896
DateWed Aug 7 12:50:35 BST 2019
Unique Job IDba8686f32574d490
SequenceMSASRTMVSS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.975 Y:36.294 Z:37.204
Model (left) based on template c3i7tA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 83%
118 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3i7tA_



100.0 100
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of rv2704, a member of highly conserved2 yjgf/yer057c/uk114 family, from mycobacterium tuberculosis
2d2b33a1



100.0 30
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
3d1nq3a_



100.0 29
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
4d1onia_



100.0 29
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
5d1qaha_



100.0 29
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
6c3r0pB_



100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:l-psp putative endoribonuclease;
PDBTitle: crystal structure of l-psp putative endoribonuclease from uncultured2 organism
7c2ig8C_



100.0 29
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein pa3499;
PDBTitle: crystal structure of a protein of unknown function pa3499 from2 pseudomonas aeruginosa
8c3k0tA_



100.0 25
PDB header:sugar binding protein
Chain: A: PDB Molecule:endoribonuclease l-psp, putative;
PDBTitle: crystal structure of pspto -psp protein in complex with d-beta-glucose2 from pseudomonas syringae pv. tomato str. dc3000
9c6izhE_



100.0 33
PDB header:hydrolase
Chain: E: PDB Molecule:2-aminomuconate deaminase;
PDBTitle: crystal structure of deaminase amne from pseudomonas sp. ap-3
10c3quwA_



100.0 24
PDB header:protein binding
Chain: A: PDB Molecule:protein mmf1;
PDBTitle: crystal structure of yeast mmf1
11c1xrgB_



100.0 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative translation initiation inhibitor, yjgf family;
PDBTitle: conserved hypothetical protein from clostridium thermocellum cth-2968
12d2ewca1



100.0 23
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
13c3m4sC_



100.0 30
PDB header:unknown function
Chain: C: PDB Molecule:putative endoribonuclease l-psp;
PDBTitle: crystal structure of a putative endoribonuclease l-psp from entamoeba2 histolytica, orthorhombic form
14d2cvla1



100.0 29
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
15d1pf5a_



100.0 30
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
16d1jd1a_



100.0 29
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
17c3l7qD_



100.0 30
PDB header:translation
Chain: D: PDB Molecule:putative translation initiation inhibitor, aldr regulator-
PDBTitle: crystal structure of aldr from streptococcus mutans
18c5v4dE_



100.0 35
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:putative translational inhibitor protein;
PDBTitle: crystal structure of the protein of unknown function of the conserved2 rid protein family yyfa from yersinia pestis
19c5yu2D_



100.0 28
PDB header:gene regulation
Chain: D: PDB Molecule:translation initiation inhibitor homologue;
PDBTitle: structure of ribonuclease yabj
20d1x25a1



100.0 27
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
21c3gtzA_



not modelled 100.0 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative translation initiation inhibitor;
PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium
22c3lmeE_



not modelled 100.0 28
PDB header:translation
Chain: E: PDB Molecule:possible translation initiation inhibitor;
PDBTitle: structure of probable translation initiation inhibitor from (rpa2473)2 from rhodopseudomonas palustris
23d1qd9a_



not modelled 100.0 30
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
24d1xrga_



not modelled 100.0 33
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
25c2dyyG_



not modelled 100.0 34
PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:upf0076 protein ph0854;
PDBTitle: crystal structure of putative translation initiation2 inhibitor ph0854 from pyrococcus horikoshii
26d1j7ha_



not modelled 100.0 31
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
27c3v4dC_



not modelled 100.0 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:aminoacrylate peracid reductase rutc;
PDBTitle: crystal structure of rutc protein a member of the yjgf family from2 e.coli
28c5v4fA_



not modelled 100.0 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative translational inhibitor protein;
PDBTitle: crystal structure of the protein of unknown function of the conserved2 rid protein family yyfb from yersinia pestis
29c3k12F_



not modelled 100.0 26
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:uncharacterized protein a6v7t0;
PDBTitle: crystal structure of an uncharacterized protein a6v7t0 from2 pseudomonas aeruginosa
30c3kjjL_



not modelled 100.0 27
PDB header:unknown function
Chain: L: PDB Molecule:nmb1025 protein;
PDBTitle: crystal structure of nmb1025, a member of yjgf protein family, from2 neisseria meningitidis (hexagonal crystal form)
31d2cwja1



not modelled 100.0 32
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
32c5hp8C_



not modelled 100.0 30
PDB header:hydrolase
Chain: C: PDB Molecule:reactive intermediate deaminase a, chloroplastic;
PDBTitle: crystal structures of rida in complex with pyruvate
33d1qu9a_



not modelled 100.0 25
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
34c3lybC_



not modelled 100.0 26
PDB header:hydrolase
Chain: C: PDB Molecule:putative endoribonuclease;
PDBTitle: structure of putative endoribonuclease(kp1_3112) from klebsiella2 pneumoniae
35d2otma1



not modelled 99.9 15
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:YjgF/L-PSP
36c3d01G_



not modelled 99.9 21
PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the protein atu1372 with unknown function from2 agrobacterium tumefaciens
37c3i3fB_



not modelled 99.9 22
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: hypothetical protein from giardia lamblia gl50803_14299
38c4bpsA_



not modelled 99.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:fkbo;
PDBTitle: crystal structure of chorismatase at 1.08 angstrom resolution.
39c5a3kA_



not modelled 99.9 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative pteridine-dependent dioxygenase;
PDBTitle: chorismatase mechanisms reveal fundamentally different types of2 reaction in a single conserved protein fold
40c2p18A_



not modelled 34.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:glyoxalase ii;
PDBTitle: crystal structure of the leishmania infantum glyoxalase ii
41d1qnaa1



not modelled 21.9 19
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
42c2x47A_



not modelled 19.8 13
PDB header:signaling protein
Chain: A: PDB Molecule:macro domain-containing protein 1;
PDBTitle: crystal structure of human macrod1
43c6gjeB_



not modelled 17.6 26
PDB header:protein transport
Chain: B: PDB Molecule:cubilin;
PDBTitle: structure of the amnionless(20-357)-cubilin(36-135) complex
44c2ii1A_



not modelled 16.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:acetamidase;
PDBTitle: crystal structure of acetamidase (10172637) from bacillus halodurans2 at 1.95 a resolution
45c5zr1A_



not modelled 16.1 15
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: saccharomyces cerevisiae origin recognition complex bound to a 72-bp2 origin dna containing acs and b1 element
46c5ubuC_



not modelled 15.0 28
PDB header:hydrolase
Chain: C: PDB Molecule:putative acetamidase/formamidase;
PDBTitle: 2.75 angstrom resolution crystal structure of acetamidase from2 yersinia enterocolitica.
47c3mlcC_



not modelled 14.6 24
PDB header:isomerase
Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase;
PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate
48c2qbbF_



not modelled 14.6 17
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s6;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with gentamicin. this file contains the 30s subunit of the3 second 70s ribosome, with gentamicin bound. the entire crystal4 structure contains two 70s ribosomes and is described in remark 400.
49d2qalf1



not modelled 14.6 17
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
50d1nh2a1



not modelled 14.4 14
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
51d1mp9a1



not modelled 14.3 21
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
52c5fszA_



not modelled 14.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:macrodomain;
PDBTitle: crystal structure of trypanosoma cruzi macrodomain
53c3r2uC_



not modelled 14.0 8
PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col
54c2wknE_



not modelled 13.9 18
PDB header:hydrolase
Chain: E: PDB Molecule:formamidase;
PDBTitle: gamma lactamase from delftia acidovorans
55d1xm8a_



not modelled 13.4 16
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
56d1cdwa1



not modelled 12.8 19
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
57d2f4la1



not modelled 12.5 16
Fold:CUB-like
Superfamily:Acetamidase/Formamidase-like
Family:Acetamidase/Formamidase-like
58c1mp9B_



not modelled 12.3 20
PDB header:dna binding protein
Chain: B: PDB Molecule:tata-binding protein;
PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus acidocaldarius
59d1r5pa_



not modelled 12.1 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:KaiB-like
60c1d3uA_



not modelled 12.1 11
PDB header:gene regulation/dna
Chain: A: PDB Molecule:tata-binding protein;
PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
61c3mjjD_



not modelled 12.0 9
PDB header:hydrolase
Chain: D: PDB Molecule:predicted acetamidase/formamidase;
PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis
62c2z8uQ_



not modelled 11.9 20
PDB header:transcription
Chain: Q: PDB Molecule:tata-box-binding protein;
PDBTitle: methanococcus jannaschii tbp
63d2a6aa1



not modelled 10.5 7
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
64d1xhja_



not modelled 10.4 18
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
65c2kjwA_



not modelled 9.3 28
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: solution structure and backbone dynamics of the permutant p54-55
66c5e84B_



not modelled 9.2 12
PDB header:chaperone
Chain: B: PDB Molecule:78 kda glucose-regulated protein;
PDBTitle: atp-bound state of bip
67c2f6aJ_



not modelled 9.1 24
PDB header:cell adhesion/structural protein
Chain: J: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
68c4kunB_



not modelled 9.1 14
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein lpp1115;
PDBTitle: crystal structure of legionella pneumophila lpp1115 / kaib
69d1g0wa1



not modelled 8.8 16
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
70c6fcgB_



not modelled 8.8 10
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside hydrolase, gh17 family;
PDBTitle: crystal structure of an endo-laminarinase from formosa hel1_33_131
71d1qh4a1



not modelled 8.6 22
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
72d1mzja2



not modelled 8.3 17
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
73c4j8fA_



not modelled 7.9 21
PDB header:chaperone
Chain: A: PDB Molecule:heat shock 70 kda protein 1a/1b, hsc70-interacting protein;
PDBTitle: crystal structure of a fusion protein containing the nbd of hsp70 and2 the middle domain of hip
74c2f6aF_



not modelled 7.8 24
PDB header:cell adhesion/structural protein
Chain: F: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
75c2f6aE_



not modelled 7.8 24
PDB header:cell adhesion/structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
76c2f6aI_



not modelled 7.8 24
PDB header:cell adhesion/structural protein
Chain: I: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
77c2f6aG_



not modelled 7.8 24
PDB header:cell adhesion/structural protein
Chain: G: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
78c2f6aH_



not modelled 7.8 24
PDB header:cell adhesion/structural protein
Chain: H: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
79d2qeda1



not modelled 7.7 15
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
80c5mb9B_



not modelled 7.6 19
PDB header:chaperone
Chain: B: PDB Molecule:putative heat shock protein;
PDBTitle: crystal structure of the eukaryotic ribosome associated complex (rac),2 a unique hsp70/hsp40 pair
81c1okjB_



not modelled 7.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsab;
PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma"
82c2d3mA_



not modelled 7.5 8
PDB header:transferase
Chain: A: PDB Molecule:pentaketide chromone synthase;
PDBTitle: pentaketide chromone synthase complexed with coenzyme a
83c4gs5A_



not modelled 7.4 10
PDB header:ligase
Chain: A: PDB Molecule:acyl-coa synthetase (amp-forming)/amp-acid ligase ii-like
PDBTitle: the crystal structure of acyl-coa synthetase (amp-forming)/amp-acid2 ligase ii-like protein from dyadobacter fermentans dsm 18053
84c3j0xI_



not modelled 7.2 17
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s6;
PDBTitle: structural characterization of mrna-trna translocation intermediates2 (30s ribosome of class 4b of the six classes)
85d1qh5a_



not modelled 7.2 25
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
86c6n9aB_



not modelled 7.1 7
PDB header:biosynthetic protein
Chain: B: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsab;
PDBTitle: crystal structure of thermotoga maritima threonylcarbamoyladenosine2 biosynthesis complex tsab2d2e2 bound to atp and carboxy-amp
87c3oqhB_



not modelled 7.1 19
PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein yvmc;
PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic
88d2ix4a2



not modelled 7.1 21
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
89d1mp9a2



not modelled 7.0 18
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
90c5br9C_



not modelled 7.0 21
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein with similarity to2 peptidase yeaz from pseudomonas aeruginosa
91d1veha_



not modelled 7.0 15
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
92d1sxjc1



not modelled 7.0 17
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
93d1cdwa2



not modelled 6.9 22
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
94c1cagA_



not modelled 6.8 29
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
95c1cagC_



not modelled 6.8 29
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
96d1sfla_



not modelled 6.8 5
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
97d1qm4a1



not modelled 6.4 20
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
98c3r6mD_



not modelled 6.3 29
PDB header:hydrolase
Chain: D: PDB Molecule:yeaz, resuscitation promoting factor;
PDBTitle: crystal structure of vibrio parahaemolyticus yeaz
99c5obuA_



not modelled 6.2 12
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: mycoplasma genitalium dnak deletion mutant lacking sbdalpha in complex2 with amppnp.

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