Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2705c_(-)_3019824_3020213
DateWed Aug 7 12:50:36 BST 2019
Unique Job ID3d391839b277f499
SequenceVRMTPDPAML ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.539 Y:44.023 Z:37.136
Model (left) based on template d2o0qa1
Top template information
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:CC0527-like
Confidence and coverage
Confidence:100.0% Coverage: 86%
111 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2o0qa1



100.0 31
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:CC0527-like
2d1wfxa_



86.0 15
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:Tpt1/KptA
3c6edeA_



74.8 23
PDB header:transferase
Chain: A: PDB Molecule:probable rna 2'-phosphotransferase;
PDBTitle: trna 2'-phosphotransferase
4c1o1aP_



28.8 15
PDB header:contractile protein
Chain: P: PDB Molecule:skeletal muscle myosin ii;
PDBTitle: molecular models of averaged rigor crossbridges from tomograms of2 insect flight muscle
5d1kl9a2



24.7 40
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
6c5jknA_



21.7 28
PDB header:hydrolase
Chain: A: PDB Molecule:protein fam63a;
PDBTitle: crystal structure of deubiquitinase mindy-1
7d1q46a2



21.4 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
8d1fnoa3



20.6 13
Fold:Ferredoxin-like
Superfamily:Bacterial exopeptidase dimerisation domain
Family:Bacterial exopeptidase dimerisation domain
9d1kjwa2



17.5 9
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
10d1wi9a_



17.4 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
11c2k52A_



17.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1198;
PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b
12c6hbbA_



16.0 21
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein ccmm;
PDBTitle: crystal structure of the small subunit-like domain 1 of ccmm from2 synechococcus elongatus (strain pcc 7942)
13d1ryla_



13.9 18
Fold:Hypothetical protein yfbM
Superfamily:Hypothetical protein yfbM
Family:Hypothetical protein yfbM
14d1sroa_



13.8 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
15c6k6lA_



13.6 17
PDB header:unknown function
Chain: A: PDB Molecule:pseudo deubiquitinase;
PDBTitle: ygl082w-catalytic domain
16c5v77B_



13.0 67
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from neisseria2 gonorrhoeae
17c1q46A_



12.0 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia
18c4wsiB_



11.4 15
PDB header:peptide binding protein
Chain: B: PDB Molecule:maguk p55 subfamily member 5;
PDBTitle: crystal structure of pals1/crb complex
19c1g8xB_



11.4 17
PDB header:structural protein
Chain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3;
PDBTitle: structure of a genetically engineered molecular motor
20d1r26a_



11.1 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
21c1yz6A_



not modelled 11.0 20
PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor 2 alpha
PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi
22d1s5da_



not modelled 10.9 19
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
23d3cx5a2



not modelled 10.6 15
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
24c4pd3B_



not modelled 10.2 23
PDB header:contractile protein
Chain: B: PDB Molecule:nonmuscle myosin heavy chain b, alpha-actinin a chimera
PDBTitle: crystal structure of rigor-like human nonmuscle myosin-2b
25c5mrgA_



not modelled 10.0 24
PDB header:dna binding protein
Chain: A: PDB Molecule:tar dna-binding protein 43;
PDBTitle: solution structure of tdp-43 (residues 1-102)
26d1tr0a_



not modelled 9.5 27
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
27c4nnkA_



not modelled 9.5 26
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: structural basis for targeting the ribosomal protein s1 of2 mycobacterium tuberculosis by pyrazinamide
28d1n0ea_



not modelled 9.3 9
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
29c6mr1A_



not modelled 9.3 21
PDB header:protein binding
Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein;
PDBTitle: rbcs-like subdomain of ccmm
30c5i0hA_



not modelled 9.1 15
PDB header:motor protein
Chain: A: PDB Molecule:unconventional myosin-x;
PDBTitle: crystal structure of myosin x motor domain in pre-powerstroke state
31d2ahob2



not modelled 8.9 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
32d1k44a_



not modelled 8.7 14
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
33c2ahoB_



not modelled 8.7 19
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: structure of the archaeal initiation factor eif2 alpha-gamma2 heterodimer from sulfolobus solfataricus complexed with gdpnp
34d3bzka4



not modelled 8.7 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
35c2k4kA_



not modelled 8.3 26
PDB header:rna binding protein
Chain: A: PDB Molecule:general stress protein 13;
PDBTitle: solution structure of gsp13 from bacillus subtilis
36c1n0fF_



not modelled 8.3 9
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
37c5tbyA_



not modelled 8.3 19
PDB header:contractile protein
Chain: A: PDB Molecule:myosin-7;
PDBTitle: human beta cardiac heavy meromyosin interacting-heads motif obtained2 by homology modeling (using swiss-model) of human sequence from3 aphonopelma homology model (pdb-3jbh), rigidly fitted to human beta-4 cardiac negatively stained thick filament 3d-reconstruction (emd-5 2240)
38c2cqoA_



not modelled 8.2 18
PDB header:ribosome
Chain: A: PDB Molecule:nucleolar protein of 40 kda;
PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067
39c6qh2A_



not modelled 7.9 23
PDB header:signaling protein
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: solution nmr ensemble for a chimeric kh-s1 domain construct of2 exosomal polynucleotide phosphrylase at 298k compiled using the3 comand method
40c2khiA_



not modelled 7.8 23
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1
41c2n4pA_



not modelled 7.7 24
PDB header:dna binding protein
Chain: A: PDB Molecule:tar dna-binding protein 43;
PDBTitle: solution structure of the n-terminal domain of tdp-43
42c3r9lA_



not modelled 7.6 19
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of nucleoside diphosphate kinase from giardia2 lamblia featuring a disordered dinucleotide binding site
43d1zs6a1



not modelled 7.3 23
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
44d1wi5a_



not modelled 7.3 11
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
45d3d85d2



not modelled 7.2 0
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
46c3jbhA_



not modelled 7.1 20
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain striated muscle;
PDBTitle: two heavy meromyosin interacting-heads motifs flexible docked into2 tarantula thick filament 3d-map allows in depth study of intra- and3 intermolecular interactions
47d2nn6i2



not modelled 6.9 31
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
48d1xiqa_



not modelled 6.7 18
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
49c3fhkF_



not modelled 6.7 22
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide isomerase
50d2proc1



not modelled 6.7 36
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
51d1syra_



not modelled 6.6 7
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
52c5xq5A_



not modelled 6.6 23
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 5 of the e. coli ribosomal protein s1
53c1q8kA_



not modelled 6.5 23
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 2
PDBTitle: solution structure of alpha subunit of human eif2
54c2khjA_



not modelled 6.5 20
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1
55c1i84V_



not modelled 6.4 21
PDB header:contractile protein
Chain: V: PDB Molecule:smooth muscle myosin heavy chain;
PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment.
56c2ycuA_



not modelled 6.3 28
PDB header:motor protein
Chain: A: PDB Molecule:non muscle myosin 2c, alpha-actinin;
PDBTitle: crystal structure of human non muscle myosin 2c in pre-power stroke2 state
57d1qled_



not modelled 6.3 20
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
58c1kjwA_



not modelled 6.0 9
PDB header:neuropeptide
Chain: A: PDB Molecule:postsynaptic density protein 95;
PDBTitle: sh3-guanylate kinase module from psd-95
59d1xqia1



not modelled 6.0 14
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
60c2mflA_



not modelled 5.9 9
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: domain 2 of e. coli ribosomal protein s1
61c5i0iB_



not modelled 5.8 16
PDB header:motor protein
Chain: B: PDB Molecule:unconventional myosin-x;
PDBTitle: crystal structure of myosin x motor domain with 2iq motifs in pre-2 powerstroke state
62c1br4E_



not modelled 5.7 21
PDB header:muscle protein
Chain: E: PDB Molecule:myosin;
PDBTitle: smooth muscle myosin motor domain-essential light chain2 complex with mgadp.bef3 bound at the active site
63c1z6gA_



not modelled 5.7 3
PDB header:transferase
Chain: A: PDB Molecule:guanylate kinase;
PDBTitle: crystal structure of guanylate kinase from plasmodium falciparum
64c6n1cB_



not modelled 5.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from legionella2 pneumophila philadelphia 1
65c6igzJ_



not modelled 5.5 30
PDB header:plant protein
Chain: J: PDB Molecule:psaj;
PDBTitle: structure of psi-lhci
66d1wkja1



not modelled 5.5 32
Fold:Ferredoxin-like
Superfamily:Nucleoside diphosphate kinase, NDK
Family:Nucleoside diphosphate kinase, NDK
67c3m0zD_



not modelled 5.5 43
PDB header:lyase
Chain: D: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of putative aldolase from klebsiella pneumoniae.
68c3dtpA_



not modelled 5.2 22
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and cardiac muscle;
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to tarantula2 muscle thick filament cryo-em 3d-map
69c4anjA_



not modelled 5.2 15
PDB header:motor protein/metal-bindng protein
Chain: A: PDB Molecule:unconventional myosin-vi, green fluorescent protein;
PDBTitle: myosin vi (mdinsert2-gfp fusion) pre-powerstroke state (mg.adp.alf4)
70c3j04A_



not modelled 5.2 21
PDB header:structural protein
Chain: A: PDB Molecule:myosin-11;
PDBTitle: em structure of the heavy meromyosin subfragment of chick smooth2 muscle myosin with regulatory light chain in phosphorylated state
71c2ijoA_



not modelled 5.2 27
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:polyprotein;
PDBTitle: crystal structure of the west nile virus ns2b-ns3 protease2 complexed with bovine pancreatic trypsin inhibitor
72d2mysa2



not modelled 5.1 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
73c4p7hB_



not modelled 5.1 17
PDB header:motor/fluorescent protein
Chain: B: PDB Molecule:myosin-7,green fluorescent protein;
PDBTitle: structure of human beta-cardiac myosin motor domain::gfp chimera
74c3e90C_



not modelled 5.0 27
PDB header:hydrolase
Chain: C: PDB Molecule:ns2b cofactor;
PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h

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