Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2707_(-)_3020583_3021557
DateWed Aug 7 12:50:36 BST 2019
Unique Job ID28f818df056636be
SequenceMSDQVPKPHR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.375 Y:42.915 Z:32.606
Model (left) based on template d2r6gf1
Top template information
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
Confidence and coverage
Confidence: 94.1% Coverage: 17%
56 residues ( 17% of your sequence) have been modelled with 94.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r6gf1



94.1 20
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
2c6eznH_



29.7 7
PDB header:membrane protein
Chain: H: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
3c2yn9B_



10.9 10
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: cryo-em structure of gastric h+,k+-atpase with bound rubidium
4c2qksA_



10.1 17
PDB header:metal transport
Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera;
PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera
5c5lnkW_



9.5 17
PDB header:oxidoreductase
Chain: W: PDB Molecule:mitochondrial complex i, sgdh subunit;
PDBTitle: entire ovine respiratory complex i
6c3echC_



9.1 21
PDB header:transcription, transcription regulation
Chain: C: PDB Molecule:25-mer fragment of protein armr;
PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr
7c3b8eB_



8.8 20
PDB header:hydrolase/transport protein
Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit
PDBTitle: crystal structure of the sodium-potassium pump
8c2voyB_



8.2 14
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
9c3ixzB_



7.9 10
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
10c2zxeB_



7.5 19
PDB header:hydrolase/transport protein
Chain: B: PDB Molecule:na+,k+-atpase beta subunit;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
11c3kdpD_



7.1 20
PDB header:hydrolase
Chain: D: PDB Molecule:sodium/potassium-transporting atpase subunit beta-1;
PDBTitle: crystal structure of the sodium-potassium pump
12c2xzbB_



6.6 10
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h,k-atpase with bound bef and sch28080
13d1m9dc_



5.9 17
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
14d2pxrc1



5.5 19
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below