Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2708c_(-)_3021558_3021806
DateWed Aug 7 12:50:36 BST 2019
Unique Job ID14344109a0873e94
SequenceMSGMQTQTIE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.135 Y:22.767 Z:19.728
Model (left) based on template c3rmsA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein svir_20580 from2 saccharomonospora viridis
Confidence and coverage
Confidence: 62.2% Coverage: 40%
33 residues ( 40% of your sequence) have been modelled with 62.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rmsA_
62.2 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein svir_20580 from2 saccharomonospora viridis
2d2gmga1
46.8 47
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
3d1s24a_
36.4 43
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
4c1s24A_
36.4 43
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin 2;
PDBTitle: rubredoxin domain ii from pseudomonas oleovorans
5d1dx8a_
33.5 34
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
6c5xvsA_
33.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:gdp/udp-n,n'-diacetylbacillosamine 2-epimerase
PDBTitle: crystal structure of udp-glcnac 2-epimerase neuc complexed with udp
7c2kdxA_
30.9 33
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
8c3vthA_
28.5 38
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase maturation factor;
PDBTitle: crystal structure of full-length hypf in the phosphate- and2 nucleotide-bound form
9c5mg5W_
26.0 47
PDB header:transferase
Chain: W: PDB Molecule:2,4-diacetylphloroglucinol biosynthesis protein;
PDBTitle: a multi-component acyltransferase phlabc from pseudomonas protegens2 soaked with the monoacetylphloroglucinol (mapg)
10d2dsxa1
25.8 43
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
11d2gnra1
25.4 47
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:SSO2064-like
12c4g9iA_
25.2 31
PDB header:transferase
Chain: A: PDB Molecule:hydrogenase maturation protein hypf;
PDBTitle: crystal structure of t.kodakarensis hypf
13c2v3bB_
23.8 52
PDB header:oxidoreductase
Chain: B: PDB Molecule:rubredoxin 2;
PDBTitle: crystal structure of the electron transfer complex rubredoxin -2 rubredoxin reductase from pseudomonas aeruginosa.
14c2p58A_
22.9 26
PDB header:transport protein/chaperone
Chain: A: PDB Molecule:putative type iii secretion protein ysce;
PDBTitle: structure of the yersinia pestis type iii secretion system needle2 protein yscf in complex with its chaperones ysce/yscg
15d1qcva_
22.1 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
16c6ok1B_
21.8 40
PDB header:transport protein
Chain: B: PDB Molecule:chsh2(duf35);
PDBTitle: ltp2-chsh2(duf35) aldolase
17c3gv1A_
21.3 47
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae
18c2r37A_
20.9 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 3;
PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant)
19c5dldA_
19.8 17
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: crystal structure of a udp-n-acetylglucosamine 2-epimerase from2 burkholderia vietnamiensis complexed with udp-glcnac and udp
20c3pe3D_
18.9 20
PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
21d1h7va_
not modelled 18.9 34
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
22c1v57A_
not modelled 18.7 33
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
23c6et9H_
not modelled 18.5 60
PDB header:transferase
Chain: H: PDB Molecule:pfam duf35;
PDBTitle: structure of the acetoacetyl-coa-thiolase/hmg-coa-synthase complex2 from methanothermococcus thermolithotrophicus at 2.75 a
24d4rxna_
not modelled 18.5 48
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
25d1u5sb1
not modelled 18.4 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
26c2ms3A_
not modelled 18.3 38
PDB header:electron transport
Chain: A: PDB Molecule:anaerobic nitric oxide reductase flavorubredoxin;
PDBTitle: the nmr structure of the rubredoxin domain of the no reductase2 flavorubredoxin from escherichia coli
27d1v87a_
not modelled 17.3 38
Fold:RING/U-box
Superfamily:RING/U-box
Family:RING finger domain, C3HC4
28c4nncA_
not modelled 17.1 18
PDB header:lyase
Chain: A: PDB Molecule:obca, oxalate biosynthetic component a;
PDBTitle: ternary complex of obca with c4-coa adduct and oxalate
29c4nesA_
not modelled 16.9 12
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: crystal structure of methanocaldococcus jannaschii udp-glcnac 2-2 epimerase in complex with udp-glcnac and udp
30c5n9mA_
not modelled 16.2 26
PDB header:transferase
Chain: A: PDB Molecule:cobyric acid synthase;
PDBTitle: crystal structure of gatd - a glutamine amidotransferase from2 staphylococcus aureus involved in peptidoglycan amidation
31c3zeyC_
not modelled 16.0 27
PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein sa, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
32c4ml1D_
not modelled 15.9 27
PDB header:isomerase
Chain: D: PDB Molecule:dsbp;
PDBTitle: disulfide isomerase (dsbp) from multidrug resistance inca/c2 transferable plasmid in oxidized state (p212121 space group)
33d1n5ga_
not modelled 15.5 24
Fold:Zinc finger domain of DNA polymerase-alpha
Superfamily:Zinc finger domain of DNA polymerase-alpha
Family:Zinc finger domain of DNA polymerase-alpha
34d1v58a1
not modelled 15.0 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
35c3brnA_
not modelled 14.5 22
PDB header:ligand binding protein
Chain: A: PDB Molecule:lipocalin;
PDBTitle: crystal structure of am182 serotonin complex
36c3hugJ_
not modelled 13.9 31
PDB header:transcription/membrane protein
Chain: J: PDB Molecule:probable conserved membrane protein;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
37c2f9yB_
not modelled 13.8 35
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
38d2f9yb1
not modelled 13.8 35
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
39c2vlvA_
not modelled 13.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin h isoform 2.;
PDBTitle: crystal structure of barley thioredoxin h isoform 2 in partially2 radiation-reduced state
40c3tsuA_
not modelled 13.0 38
PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
41d1ubdc2
not modelled 13.0 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42c2f9iD_
not modelled 12.8 20
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
43c4ex8A_
not modelled 12.5 44
PDB header:ligase
Chain: A: PDB Molecule:alna;
PDBTitle: crystal structure of the prealnumycin c-glycosynthase alna
44c4gijC_
not modelled 12.4 25
PDB header:hydrolase
Chain: C: PDB Molecule:pseudouridine-5'-phosphate glycosidase;
PDBTitle: crystal structure of pseudouridine monophosphate glycosidase complexed2 with sulfate
45d1a8oa_
not modelled 12.3 54
Fold:Acyl carrier protein-like
Superfamily:Retrovirus capsid dimerization domain-like
Family:Retrovirus capsid protein C-terminal domain
46c3iz6A_
not modelled 12.3 40
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
47c2vsnB_
not modelled 12.2 25
PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
48c1d4uA_
not modelled 12.1 29
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
49c1k98A_
not modelled 12.0 60
PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: adomet complex of meth c-terminal fragment
50c2q6vA_
not modelled 12.0 21
PDB header:transferase
Chain: A: PDB Molecule:glucuronosyltransferase gumk;
PDBTitle: crystal structure of gumk in complex with udp
51c3izbA_
not modelled 11.9 33
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
52c6ro4G_
not modelled 11.8 25
PDB header:translocase
Chain: G: PDB Molecule:dna repair protein complementing xp-a cells;
PDBTitle: structure of the core tfiih-xpa-dna complex
53d2f8aa1
not modelled 11.8 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
54c5xyiA_
not modelled 11.8 33
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: small subunit of trichomonas vaginalis ribosome
55c3bchA_
not modelled 11.7 27
PDB header:cell adhesion, ribosomal protein
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: crystal structure of the human laminin receptor precursor
56c2o2kA_
not modelled 11.7 46
PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n
57c1jzdA_
not modelled 11.5 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex
58c6fqbE_
not modelled 11.3 35
PDB header:ligase
Chain: E: PDB Molecule:cobyric acid synthase;
PDBTitle: murt/gatd peptidoglycan amidotransferase complex from streptococcus2 pneumoniae r6
59d1x3ha1
not modelled 11.2 20
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
60c2xznB_
not modelled 11.2 40
PDB header:ribosome
Chain: B: PDB Molecule:rps0e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
61c1s1hB_
not modelled 11.1 33
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
62d2rdva_
not modelled 11.1 48
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
63c4gxzB_
not modelled 10.7 40
PDB header:isomerase
Chain: B: PDB Molecule:suppression of copper sensitivity protein;
PDBTitle: crystal structure of a periplasmic thioredoxin-like protein from2 salmonella enterica serovar typhimurium
64c3f4tA_
not modelled 10.4 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of wolbachia pipientis alpha-dsba1 c97a/c146a
65d1vi6a_
not modelled 10.2 47
Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
66c6g4wr_
not modelled 10.1 33
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s17;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
67c4uj3B_
not modelled 10.1 21
PDB header:transport protein
Chain: B: PDB Molecule:rab-3a-interacting protein;
PDBTitle: crystal structure of human rab11-rabin8-fip3
68d1iroa_
not modelled 10.0 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
69c2fqhA_
not modelled 10.0 57
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0938;
PDBTitle: nmr structure of hypothetical protein ta0938 from2 termoplasma acidophilum
70c5yt6B_
not modelled 9.9 57
PDB header:protein binding
Chain: B: PDB Molecule:tax1-binding protein 1;
PDBTitle: crystal structure of tax1bp1 ubz2 in complex with mono-ubiquitin
71c3emxB_
not modelled 9.9 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from aeropyrum pernix
72c1t3bA_
not modelled 9.8 27
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
73c2kn9A_
not modelled 9.8 33
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
74c3bbnB_
not modelled 9.7 20
PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein s2;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
75c5c00B_
not modelled 9.4 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:mdba protein;
PDBTitle: mdba protein, a thiol-disulfide oxidoreductase from corynebacterium2 diphtheriae
76d1t3ba1
not modelled 9.3 27
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
77d1brfa_
not modelled 9.2 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
78d1mska_
not modelled 9.2 46
Fold:Methionine synthase activation domain-like
Superfamily:Methionine synthase activation domain-like
Family:Methionine synthase SAM-binding domain
79c5djsA_
not modelled 9.2 30
PDB header:transferase
Chain: A: PDB Molecule:tetratricopeptide tpr_2 repeat protein;
PDBTitle: thermobaculum terrenum o-glcnac transferase mutant - k341m
80c3gn3B_
not modelled 9.1 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative protein-disulfide isomerase;
PDBTitle: crystal structure of a putative protein-disulfide isomerase from2 pseudomonas syringae to 2.5a resolution.
81c3hd5A_
not modelled 8.9 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of a thiol:disulfide interchange protein2 dsba from bordetella parapertussis
82c3ghaA_
not modelled 8.8 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein d;
PDBTitle: crystal structure of etda-treated bdbd (reduced)
83c3ot5D_
not modelled 8.8 14
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
84d2eppa1
not modelled 8.8 83
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
85c4n30A_
not modelled 8.7 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein disulfide isomerase;
PDBTitle: crystal structure of pseudomonas aeruginosa dsba2
86c5zvlB_
not modelled 8.7 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of wheat glutarredoxin
87d1hyua4
not modelled 8.6 23
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
88d1vd4a_
not modelled 8.6 33
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
89c5wuqD_
not modelled 8.5 23
PDB header:metal binding protein
Chain: D: PDB Molecule:anti-sigma-w factor rsiw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, a zinc2 binding form
90d1iu5a_
not modelled 8.5 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
91d1mwpa_
not modelled 8.5 34
Fold:SRCR-like
Superfamily:A heparin-binding domain
Family:A heparin-binding domain
92c2k8vA_
not modelled 8.5 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin domain-containing protein 12;
PDBTitle: solution structure of oxidised erp18
93c4bmjC_
not modelled 8.4 30
PDB header:apoptosis
Chain: C: PDB Molecule:tax1-binding protein 1;
PDBTitle: structure of the ubz1and2 tandem of the ubiquitin-binding adaptor2 protein tax1bp1
94c3j6vB_
not modelled 8.4 20
PDB header:ribosome
Chain: B: PDB Molecule:28s ribosomal protein s2, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
95c5cm2M_
not modelled 8.3 33
PDB header:transferase
Chain: M: PDB Molecule:trna methyltransferase activator subunit;
PDBTitle: insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
96d1lv3a_
not modelled 8.2 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Hypothetical zinc finger protein YacG
97d1to6a_
not modelled 8.2 39
Fold:Glycerate kinase I
Superfamily:Glycerate kinase I
Family:Glycerate kinase I
98c4npbA_
not modelled 8.2 20
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide isomerase ii;
PDBTitle: the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
99c3bu1A_
not modelled 8.2 15
PDB header:ligand binding protein
Chain: A: PDB Molecule:lipocalin;
PDBTitle: crystal structure of monomine-histamine complex

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