Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2709_(-)_3021849_3022295
DateWed Aug 7 12:50:36 BST 2019
Unique Job ID08a629c803044837
SequenceMWDSRVMKHG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.420 Y:58.740 Z:40.444
Model (left) based on template c4qslC_
Top template information
PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of listeria monocytogenes pyruvate carboxylase
Confidence and coverage
Confidence: 42.1% Coverage: 40%
59 residues ( 40% of your sequence) have been modelled with 42.1% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4qslC_



42.1 17
PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of listeria monocytogenes pyruvate carboxylase
2c4qslE_



40.9 17
PDB header:ligase
Chain: E: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of listeria monocytogenes pyruvate carboxylase
3d1jb0f_



22.0 30
Fold:Single transmembrane helix
Superfamily:Subunit III of photosystem I reaction centre, PsaF
Family:Subunit III of photosystem I reaction centre, PsaF
4c6fosF_



22.0 35
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit ii;
PDBTitle: cyanidioschyzon merolae photosystem i
5c3bg3A_



21.7 18
PDB header:ligase
Chain: A: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing the biotin2 carboxylase domain at the n-terminus)
6c3bg3B_



17.7 18
PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing the biotin2 carboxylase domain at the n-terminus)
7c3bg5C_



17.4 17
PDB header:ligase
Chain: C: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of staphylococcus aureus pyruvate carboxylase
8c4kt0F_



17.2 30
PDB header:electron transport
Chain: F: PDB Molecule:photosystem i subunit iii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
9c6ijjF_



16.3 25
PDB header:membrane protein
Chain: F: PDB Molecule:psaf;
PDBTitle: photosystem i of chlamydomonas reinhardtii
10c5ir6A_



15.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
11c3jcue_



14.5 16
PDB header:membrane protein
Chain: E: PDB Molecule:cytochrome b559 subunit alpha;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
12c2lowA_



14.1 25
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
13d2axte1



14.1 20
Fold:Single transmembrane helix
Superfamily:Cytochrome b559 subunits
Family:Cytochrome b559 subunits
14d2r6gf1



13.9 15
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
15c3kziE_



13.7 20
PDB header:electron transport
Chain: E: PDB Molecule:cytochrome b559 subunit alpha;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
16c5f5oF_



13.6 42
PDB header:nuclear protein/peptide
Chain: F: PDB Molecule:peptide from polymerase cofactor vp35;
PDBTitle: crystal structure of marburg virus nucleoprotein core domain bound to2 vp35 regulation peptide
17c6hu9p_



13.4 17
PDB header:oxidoreductase/electron transport
Chain: P: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
18c3rfuC_



13.1 17
PDB header:hydrolase, membrane protein
Chain: C: PDB Molecule:copper efflux atpase;
PDBTitle: crystal structure of a copper-transporting pib-type atpase
19d1v54f_



13.1 18
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Cytochrome c oxidase Subunit F
20c6igzF_



11.9 25
PDB header:plant protein
Chain: F: PDB Molecule:psaf;
PDBTitle: structure of psi-lhci
21c4l8nA_



not modelled 11.5 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pdz domain protein;
PDBTitle: crystal structure of a pdz domain protein (bdi_1242) from2 parabacteroides distasonis atcc 8503 at 2.50 a resolution
22c5mkkB_



not modelled 11.3 15
PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
23c2y69S_



not modelled 11.1 18
PDB header:electron transport
Chain: S: PDB Molecule:cytochrome c oxidase subunit 5b;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
24c4p6vD_



not modelled 10.5 8
PDB header:oxidoreductase
Chain: D: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit d;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
25c4cmxB_



not modelled 10.4 32
PDB header:nuclear protein
Chain: B: PDB Molecule:rv3378c;
PDBTitle: crystal structure of rv3378c
26c5mu5A_



not modelled 9.7 26
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of maf glycosyltransferase from magnetospirillum magneticum2 amb-1
27d1ehkb2



not modelled 9.6 20
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
28c2kjqA_



not modelled 8.3 27
PDB header:replication
Chain: A: PDB Molecule:dnaa-related protein;
PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b.
29c5vz0D_



not modelled 7.6 20
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of lactococcus lactis pyruvate carboxylase g746a2 mutant in complex with cyclic-di-amp
30c4qvrA_



not modelled 7.5 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein ftt_1539c;
PDBTitle: 2.3 angstrom crystal structure of hypothetical protein ftt1539c from2 francisella tularensis.
31c3dinE_



not modelled 7.3 18
PDB header:membrane protein, protein transport
Chain: E: PDB Molecule:preprotein translocase subunit secg;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
32c4aa3A_



not modelled 7.2 13
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter,2 abcb10 (plate form)
33c3b5wE_



not modelled 7.0 9
PDB header:membrane protein
Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba;
PDBTitle: crystal structure of eschericia coli msba
34c2k9pA_



not modelled 7.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
35c1z65A_



not modelled 6.9 13
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: mouse doppel 1-30 peptide
36c2m20B_



not modelled 6.4 30
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
37c2j5dA_



not modelled 6.4 50
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting protein 3;
PDBTitle: nmr structure of bnip3 transmembrane domain in lipid bicelles
38d1f46a_



not modelled 6.4 16
Fold:TBP-like
Superfamily:Cell-division protein ZipA, C-terminal domain
Family:Cell-division protein ZipA, C-terminal domain
39c1du1A_



not modelled 6.3 27
PDB header:signaling protein
Chain: A: PDB Molecule:skeletal dihydropyridine receptor;
PDBTitle: peptide fragment thr671-leu690 of the rabbit skeletal2 dihydropyridine receptor
40c1jzpA_



not modelled 6.3 27
PDB header:signaling protein
Chain: A: PDB Molecule:skeletal dihydropydrine receptor;
PDBTitle: modified peptide a (d18-a1) of the rabbit skeletal2 dihydropyridine receptor
41c6go1A_



not modelled 6.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase-like protein;
PDBTitle: crystal structure of a bacillus anthracis peptidoglycan deacetylase
42c2ypdB_



not modelled 6.1 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable jmjc domain-containing histone demethylation prot
PDBTitle: crystal structure of the jumonji domain of human jumonji domain2 containing 1c protein
43c5fw5C_



not modelled 6.1 67
PDB header:hydrolase
Chain: C: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of human g3bp1 in complex with semliki forest virus2 nsp3-25 comprising two fgdf motives
44c3g5uB_



not modelled 6.0 19
PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
45d2dk3a1



not modelled 6.0 39
Fold:SH3-like barrel
Superfamily:Mib/herc2 domain-like
Family:Mib/herc2 domain
46c5b2gG_



not modelled 5.8 42
PDB header:membrane protein
Chain: G: PDB Molecule:endolysin,claudin-4;
PDBTitle: crystal structure of human claudin-4 in complex with c-terminal2 fragment of clostridium perfringens enterotoxin
47c3dkmA_



not modelled 5.8 39
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hectd1;
PDBTitle: crystal structure of the hectd1 cph domain
48c3qdrB_



not modelled 5.5 38
PDB header:protein transport/toxin
Chain: B: PDB Molecule:colicin-a;
PDBTitle: structural characterization of the interaction of colicin a, colicin2 n, and tolb with the tolaiii translocon
49c3j08A_



not modelled 5.5 13
PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
50c2kkuA_



not modelled 5.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of protein af2351 from archaeoglobus fulgidus.2 northeast structural genomics consortium target att9/ontario center3 for structural proteomics target af2351
51c5aynA_



not modelled 5.2 8
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below